LOC110535331 (LOC106579535)


Basic Information

Item Value
gene id LOC110535331
gene name LOC106579535
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14905428 ~ 14918163 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620268.2
AACGACAGGAtttggtctatcttgggttagttattaACATCTTTGgccctgctgcctgacagaaaaaAACGCTCTGATTGGCTCTTCGTCTTGACAGTCACAACGGAACTGTCCAATCAACTGTCTTCACACAGAGGCCGTGATGAATCGTAAAATGTATgcgatagctagctaacgttagctatttgaCGAAATTGTATGACCGAAACGTCTTTCTTTTTTTTAGCATAATCGCTGTCATTGTAAAGTCAAAATAACGGGAGATCACTTGGAGAAAAGAGGTTATGCGTGGACAACAATCAATGCTACAGCAAGTGTAAAGAGGCTGATTTGATGTGCACGGCACTGGGAGAGGAGGCACCATGAGTAGGGAGTTGGATGCGCTGACTGTGGTGAACCAGCTACGAGATCTCGCAGCTGACCCTCTCAACAGACGAGCCATAGTACAGGACAACGGCTGCTTACCGGGGCTCATCCTCTTTCTGGACCACCCCAACCCTCAGGTCGTCTACTCAGCATTATTGGCAGTGCGCTACCTGGCAGAATGTCGGACCAACAGAGAGAAGATGAAGGGAGAGCTGGGCATGATGCTGAGTCTGCAGAATGTCATGCAGAAGGGCAGCTCCCCAGGGGAGACCAAGCTGCTGGCGTCTGAAATCTATGAGATTCTGCAGGCAGCTGGTAATGAGGCAGAGCAGGCTGAGGCTGCCTCCTGCAGACGCAAGGCTCACTTCTTCCTGGGCTCCACCAACAAGAAGGCCAAGACTGTGGTGCTGCACATCGACGGCCTGGATGACTCGACTCGTAGAAGTCTGTGTGAGGAGGCCCTGTTGAAGATCCGGGGGGTGATCAGCTTCACCTTCCAGATGGCTGTGAAGAGATGTGTGGTCAGGATCCGCTCTGACATCAAGGCTGAGGCACTGGGCACGGCGATCAACTCCACCAAGGTGATGAAGGCTGCACAGGTGGtgaagggagaggatggaggagagCTGATGCTTCCATTCCAGGAGGGTGCAGAGGAAGCAGTGGTGGAGCACAACGAGGACATCCCAGACTACCTCCCTGAGGAGGAAAGCCCGTCTCAGGAGCAGGACAAGGCCGTGACGCGCGTTGGCTCCATCACAGATGGCGTGGGCTGGCTCAGCACAGCCGCCAACTTCCTGTCCCGCTCCTTCTACTGGTGACCACTTCCTGTGTCAGTCACAATCCCAAGCCCACTAACCACCACCCGACGGTCACCTTAGCCCCGCCTATTTCATCCAGCCCTTCTACACTGCTCTCTAGTCCCTCTCAGCAGCCACACAGAGTACCACTCTGCTCAGTGTACTAGGAGCACTGGACTGCCAAGTGCAACCTGCAATAACCTTTACTTGTTTATAAAACAAAATTAGCTAAGAAAATGCTAGCTACTGTACCGCAGGCTGAACTCGCTGCACACTAAATACACTCAAGTCAATCTCTACTCGTTATGCGTCTCATAAGCCATAGACCGAGGACTTCAGAATCAGCTTACATCTCTTTTCCTTTAGGGAAGTAGTTTTCTCTGGCGCCCGATGGGTCCATCATCTCTTTGAAACCAAATTGCATTGTGGGAATGGATTGTGCTGCATCGTCTTCTGAGTTTGAGCGATTGCATTGAATGATGCTGCGCTTGTGGAAATTGGAGTGTTTTTGTGCTTATCTGTTGCTTCTTTTCCTCATCTTTGTTTTGATAAGGTTTTTTCACCCTTTTTCTGTTTGCCAATTTGATAATCCCTAATTCACTTTTCGTTCCCCTGCGGTGGGGGGCTTTTGTTTGTGCCAATCTTGCTCGCTGCCTTGTTTTCATCATGTTTATGTCTCTATCCTtcgttaggtgccttttggactCTTCACTGCCATGTATTGCTATTTATTTGTCCAGTTTAACTTCACTCGAAACCTCTGAAGCCTTGTGAATAATGCAAACTGTCTTCTCTGCGTTGGGAGCTATTTCCCCTAACAGCTCATGTCCCTCACAGAGAGATGTCATATTATTAGCGAGACAAAGAGACCCCGGTGAAGGACGGCTGATGACAGGACATTAGCTGCTCCATAGAGGACGGATGCAGAAAGGAAAGGGAAATGATGcttactgttatactgtagaaAGTTGACTTTAGTACACATTACTTCTCGTTAAATCCTCCTAGGACTTGGGAGTCTCTTGGTTGTACAGTGGAGGTGAGTGTTCAGACGGATCGTTGCTTATGTTGAAGTTGTGATGCGTTGACTCGCATCAAATTGACTTCTTTAGCCTTTTCCCCATCATCAGTGTTTTCATGTCGGATTATCATATGGTCATCTGTAGTCTGAAAGGTCTGATTTAGAGTAGACAACCGGTCCTAAATCGGTGTGATGGAGACCTCGGGGCTTGATAGCCACCTGCTAAATGTGTGTCCCTCACCCTGAAGCCCATCAACATGTTCACTATAGTGGCCCAGCCACTACATATGTTTGTTTTTTACCCCCTTTAGCCAGCAGTGTCCTTAAAATGACATACACATACGGACACACCATTGCTGCTGTCAGAAGGACACTAGAGGTGTAAGCAGCATCACTGGTCTGGATATGTACATTTAAAATtttggtcacattaacacatgtttagcagatgttatcgctggtgtagcgaaatgcttgtgttcctagctccaacagtgcagtagtatctaacaattcacaacaatacacacatctaaaagaatGGAAGTAAGAAATATGTCAATATTCGGAcaagcaatgttggagtggcattgactaaaacacagtaagagtagaatacagtatatacatctgaAATGAGTTAAACAGTATTtaaacatttattaaagtgactagtgttccattgttaaagtgaccagttagtctatgtatatagggcagcagcctctaaggtgcagggttgagtaactgggtggtacccggctagtgatggctgtttaacagtctaatggccttgagatagaagctgtttttcagtctctcggtccctgctttgatgcacctgtactgaccttaccttctggatgatagcagggtgaacaggcagtggctcgggtggttgttgtccttgatgatctttttggccttcctgtgacatcgggtggtgtaggtgtcctggagggcaggcagtgttccCCCATTcatgcgttgggcagactgcaccaccctctggtaaatggtgcctggtttcctagCAATATTAATCATAATGTTAATCTCAGTCCTTATTTCAGGaagaaatcatgtttttttttttttcaacagttaTTCTTTGTCTCCATTTTACTTTGTGGTTGAAAGATACAacacatttaaaatgtaaatattgCCCTTTTTGAAGAGGTTTTGACTGACATTGAAGTTCGATATTAGGTTTGTGCATAGATTCCTCTTTGGATTGACTTTTTATTCCTTTTGAGGAACCCTTTCACACCTGTAATCCTTTTCCAGGTGAATTATGGTCTCGTTGTGTAAAGGAAGTGCTGACCAGACAATAGTTATGCTTCTGGAGGCCAAACTCACAGCTCACACAGCTAGTAGGATGGATGgatttactgcagtgggctaaatcagggtcacagtgtttcttggtagtctgaAACAGATCTACTTTGAAAAGTCTACACCTCACACACAAGGTTATGGGCTTAAAACAAGAAGACACCTGAACCATGTCAGATctagttgaaatgtattacattttgagtttgcatcctaatattacacttttatatacatcacagaagactgaaatataatgaaataatgtttattaattatgaaaaatattaataacattccacccataagGCCACTGGTGGGGCGATTTGGTTGTTTTACTACAAGAAAGGCCTACAATAACCTCAGAATTGATCTAATAACGTATATCCACTACAGTGAGTTTATTCTCTATCTGCATCCCTCAGAAGCAGTGCTTACGAACAACAAGTTGTAGGATGAAGTCATCACTTCTATTTAATCCTTTGTCTTCCTTTTTTTGTTTAACATGAACAGCATCAGTCATGACTTAAGTTGCAACATGTAAAGTACATTTTATTATAAGTTGCACTAGTACTGTATGTCAAATACTTGGAAAAGTTTTTTTTGTCTCGGTTTAAATCTcttatgtcaaatcaaatgttaatttgtgccgaataaaacaggtgtagactttaccgtgaaatgcttaccccttaaccaacaatgcagagttaaataaGGAAATACCCTATTGTTTAATAGTCACTCCATCAAGATGGCTGACAGAATCATGTAGCAAGTCCTTAGAATAGCAGACACTTCTCATGTACAGTGTGTATCTGCTGTCTAATGTATTTCAGATCTGAAAACGGTTGATTCCCAATTTACGATTAAGGCAAAGAATATTAAAAATAACTTTAAAATGTAAA
>XM_021620267.2
GGAtttggtctatcttgggttagttattaACATCTTTGgccctgctgcctgacagaaaaaAACGCTCTGATTGGCTCTTCGTCTTGACAGTCACAACGGAACTGTCCAATCAACTGTCTTCACACAGAGGCCGTGATGAATCGTAAAATGTATgcgatagctagctaacgttagctatttgaCGAAATTGTATGACCGAAACGTCTTTCTTTTTTTTAGCATAATCGCTGTCATTGTAAAGTCAAAATAACGGGAGATCACTTGGAGAAAAGTGTAAAGAGGCTGATTTGATGTGCACGGCACTGGGAGAGGAGGCACCATGAGTAGGGAGTTGGATGCGCTGACTGTGGTGAACCAGCTACGAGATCTCGCAGCTGACCCTCTCAACAGACGAGCCATAGTACAGGACAACGGCTGCTTACCGGGGCTCATCCTCTTTCTGGACCACCCCAACCCTCAGGTCGTCTACTCAGCATTATTGGCAGTGCGCTACCTGGCAGAATGTCGGACCAACAGAGAGAAGATGAAGGGAGAGCTGGGCATGATGCTGAGTCTGCAGAATGTCATGCAGAAGGGCAGCTCCCCAGGGGAGACCAAGCTGCTGGCGTCTGAAATCTATGAGATTCTGCAGGCAGCTGGTAATGAGGCAGAGCAGGCTGAGGCTGCCTCCTGCAGACGCAAGGCTCACTTCTTCCTGGGCTCCACCAACAAGAAGGCCAAGACTGTGGTGCTGCACATCGACGGCCTGGATGACTCGACTCGTAGAAGTCTGTGTGAGGAGGCCCTGTTGAAGATCCGGGGGGTGATCAGCTTCACCTTCCAGATGGCTGTGAAGAGATGTGTGGTCAGGATCCGCTCTGACATCAAGGCTGAGGCACTGGGCACGGCGATCAACTCCACCAAGGTGATGAAGGCTGCACAGGTGGtgaagggagaggatggaggagagCTGATGCTTCCATTCCAGGAGGGTGCAGAGGAAGCAGTGGTGGAGCACAACGAGGACATCCCAGACTACCTCCCTGAGGAGGAAAGCCCGTCTCAGGAGCAGGACAAGGCCGTGACGCGCGTTGGCTCCATCACAGATGGCGTGGGCTGGCTCAGCACAGCCGCCAACTTCCTGTCCCGCTCCTTCTACTGGTGACCACTTCCTGTGTCAGTCACAATCCCAAGCCCACTAACCACCACCCGACGGTCACCTTAGCCCCGCCTATTTCATCCAGCCCTTCTACACTGCTCTCTAGTCCCTCTCAGCAGCCACACAGAGTACCACTCTGCTCAGTGTACTAGGAGCACTGGACTGCCAAGTGCAACCTGCAATAACCTTTACTTGTTTATAAAACAAAATTAGCTAAGAAAATGCTAGCTACTGTACCGCAGGCTGAACTCGCTGCACACTAAATACACTCAAGTCAATCTCTACTCGTTATGCGTCTCATAAGCCATAGACCGAGGACTTCAGAATCAGCTTACATCTCTTTTCCTTTAGGGAAGTAGTTTTCTCTGGCGCCCGATGGGTCCATCATCTCTTTGAAACCAAATTGCATTGTGGGAATGGATTGTGCTGCATCGTCTTCTGAGTTTGAGCGATTGCATTGAATGATGCTGCGCTTGTGGAAATTGGAGTGTTTTTGTGCTTATCTGTTGCTTCTTTTCCTCATCTTTGTTTTGATAAGGTTTTTTCACCCTTTTTCTGTTTGCCAATTTGATAATCCCTAATTCACTTTTCGTTCCCCTGCGGTGGGGGGCTTTTGTTTGTGCCAATCTTGCTCGCTGCCTTGTTTTCATCATGTTTATGTCTCTATCCTtcgttaggtgccttttggactCTTCACTGCCATGTATTGCTATTTATTTGTCCAGTTTAACTTCACTCGAAACCTCTGAAGCCTTGTGAATAATGCAAACTGTCTTCTCTGCGTTGGGAGCTATTTCCCCTAACAGCTCATGTCCCTCACAGAGAGATGTCATATTATTAGCGAGACAAAGAGACCCCGGTGAAGGACGGCTGATGACAGGACATTAGCTGCTCCATAGAGGACGGATGCAGAAAGGAAAGGGAAATGATGcttactgttatactgtagaaAGTTGACTTTAGTACACATTACTTCTCGTTAAATCCTCCTAGGACTTGGGAGTCTCTTGGTTGTACAGTGGAGGTGAGTGTTCAGACGGATCGTTGCTTATGTTGAAGTTGTGATGCGTTGACTCGCATCAAATTGACTTCTTTAGCCTTTTCCCCATCATCAGTGTTTTCATGTCGGATTATCATATGGTCATCTGTAGTCTGAAAGGTCTGATTTAGAGTAGACAACCGGTCCTAAATCGGTGTGATGGAGACCTCGGGGCTTGATAGCCACCTGCTAAATGTGTGTCCCTCACCCTGAAGCCCATCAACATGTTCACTATAGTGGCCCAGCCACTACATATGTTTGTTTTTTACCCCCTTTAGCCAGCAGTGTCCTTAAAATGACATACACATACGGACACACCATTGCTGCTGTCAGAAGGACACTAGAGGTGTAAGCAGCATCACTGGTCTGGATATGTACATTTAAAATtttggtcacattaacacatgtttagcagatgttatcgctggtgtagcgaaatgcttgtgttcctagctccaacagtgcagtagtatctaacaattcacaacaatacacacatctaaaagaatGGAAGTAAGAAATATGTCAATATTCGGAcaagcaatgttggagtggcattgactaaaacacagtaagagtagaatacagtatatacatctgaAATGAGTTAAACAGTATTtaaacatttattaaagtgactagtgttccattgttaaagtgaccagttagtctatgtatatagggcagcagcctctaaggtgcagggttgagtaactgggtggtacccggctagtgatggctgtttaacagtctaatggccttgagatagaagctgtttttcagtctctcggtccctgctttgatgcacctgtactgaccttaccttctggatgatagcagggtgaacaggcagtggctcgggtggttgttgtccttgatgatctttttggccttcctgtgacatcgggtggtgtaggtgtcctggagggcaggcagtgttccCCCATTcatgcgttgggcagactgcaccaccctctggtaaatggtgcctggtttcctagCAATATTAATCATAATGTTAATCTCAGTCCTTATTTCAGGaagaaatcatgtttttttttttttcaacagttaTTCTTTGTCTCCATTTTACTTTGTGGTTGAAAGATACAacacatttaaaatgtaaatattgCCCTTTTTGAAGAGGTTTTGACTGACATTGAAGTTCGATATTAGGTTTGTGCATAGATTCCTCTTTGGATTGACTTTTTATTCCTTTTGAGGAACCCTTTCACACCTGTAATCCTTTTCCAGGTGAATTATGGTCTCGTTGTGTAAAGGAAGTGCTGACCAGACAATAGTTATGCTTCTGGAGGCCAAACTCACAGCTCACACAGCTAGTAGGATGGATGgatttactgcagtgggctaaatcagggtcacagtgtttcttggtagtctgaAACAGATCTACTTTGAAAAGTCTACACCTCACACACAAGGTTATGGGCTTAAAACAAGAAGACACCTGAACCATGTCAGATctagttgaaatgtattacattttgagtttgcatcctaatattacacttttatatacatcacagaagactgaaatataatgaaataatgtttattaattatgaaaaatattaataacattccacccataagGCCACTGGTGGGGCGATTTGGTTGTTTTACTACAAGAAAGGCCTACAATAACCTCAGAATTGATCTAATAACGTATATCCACTACAGTGAGTTTATTCTCTATCTGCATCCCTCAGAAGCAGTGCTTACGAACAACAAGTTGTAGGATGAAGTCATCACTTCTATTTAATCCTTTGTCTTCCTTTTTTTGTTTAACATGAACAGCATCAGTCATGACTTAAGTTGCAACATGTAAAGTACATTTTATTATAAGTTGCACTAGTACTGTATGTCAAATACTTGGAAAAGTTTTTTTTGTCTCGGTTTAAATCTcttatgtcaaatcaaatgttaatttgtgccgaataaaacaggtgtagactttaccgtgaaatgcttaccccttaaccaacaatgcagagttaaataaGGAAATACCCTATTGTTTAATAGTCACTCCATCAAGATGGCTGACAGAATCATGTAGCAAGTCCTTAGAATAGCAGACACTTCTCATGTACAGTGTGTATCTGCTGTCTAATGTATTTCAGATCTGAAAACGGTTGATTCCCAATTTACGATTAAGGCAAAGAATATTAAAAATAACTTTAAAATGTAAA

Function

NR:

description
armadillo repeat-containing protein 1-like

GO:

id name namespace
GO:0030001 metal ion transport biological_process
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K17306 ARMC1; armadillo repeat-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620268.2 False 4436 mRNA 0.44 8 14905428 14918163
XM_021620267.2 True 4393 mRNA 0.44 7 14905435 14918163

Neighbor

gene id symbol gene type direction distance location
LOC110535327 LOC106579529 coding upstream 23236 14840653 ~ 14882192 (+)
trnay-gua-3 NA coding upstream 74567 14830776 ~ 14830861 (+)
crf crf coding upstream 110734 14793195 ~ 14794694 (+)
LOC110535322 LOC106579526 coding upstream 190005 14665667 ~ 14715423 (+)
LOC110535321 LOC106579524 coding upstream 241868 14660285 ~ 14663560 (+)
LOC118937318 NA coding downstream 79716 14997879 ~ 15016727 (+)
abhd10b abhd10 coding downstream 351449 15269612 ~ 15277101 (+)
tagln3b tagln3 coding downstream 360311 15278474 ~ 15282213 (+)
LOC110536556 LOC106590436 coding downstream 365132 15283295 ~ 15284424 (+)
spata13 LOC106579541 coding downstream 366879 15285042 ~ 15320246 (+)
G947338 NA non-coding upstream 4559 14900653 ~ 14900869 (+)
G947302 NA non-coding upstream 14963 14889628 ~ 14890465 (+)
G947286 NA non-coding upstream 92885 14812331 ~ 14812543 (+)
G947283 NA non-coding upstream 96767 14808462 ~ 14808661 (+)
G947278 NA non-coding upstream 108697 14796443 ~ 14796731 (+)
G947277 NA non-coding downstream 991 14919154 ~ 14919395 (+)
G947426 NA non-coding downstream 9340 14927503 ~ 14927739 (+)
G947438 NA non-coding downstream 17494 14935657 ~ 14935868 (+)
G947440 NA non-coding downstream 18515 14936678 ~ 14936904 (+)
G947443 NA non-coding downstream 22255 14940418 ~ 14940622 (+)
G947301 LOC106590396 other upstream 18146 14886614 ~ 14887282 (+)
G946999 NA other upstream 321379 14582543 ~ 14584049 (+)
G946692 NA other upstream 503784 14401254 ~ 14401644 (+)
G946690 NA other upstream 505155 14399862 ~ 14400273 (+)
LOC110535338 LOC106579503 other downstream 519518 15375660 ~ 15478222 (+)
rnf6 LOC106579512 other downstream 669667 15587284 ~ 15593900 (+)
atp8a2 LOC106579514 other downstream 733811 15594416 ~ 15660363 (+)
boc LOC106579445 other downstream 829210 15747150 ~ 15800515 (+)

Expression


Co-expression Network