LOC118937318


Basic Information

Item Value
gene id LOC118937318
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14997879 ~ 15016727 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034577.1
GAAGAGTGAGACACTCTGTCACCAAACAAAACATTCAACTGTGGCGTCATTGGGCCGCACCCCAGATGTTTTTGATCCAGCCCCAAACATTTTGAGAGGTGGACCGCTCACGTCCCTTGAGCCGTCCCTCACCCCTACAGCACCGGTTAGATGTCAATGTCATCACTCAGCAAAACGCCTGTCACTCAGTCAGAGTCTGCAGCATAGCACAGAGCAAATACGGACcggatgagagaggagagcagtCAAGAGACAGCAACAGACGACACAGAGAAAAcgatggagagaggcagaggagggGTCAGAAAGCTGTTTGAAAGGCGATCCCGTAATGACGACATCTGTTTTCATATGGTCGTTGACACGTAGCACCCGAAATCAGACGTCATCCTGTCCAAACCCACGGCTGCCAGACAGCATTCCAACCTCTGATTGGTTCTGACAAGCCCCTGACAGCTCTGGAGGTGAGGAGGGCAAGTGACAAAGGGCAAGCAGGGGATGAGCCAACCAAATCAGGGtatacgcccccccccccccccccccccccccatacatgAGACAAATCAGAGACGCTTCAACGTGAGTGTGTGACAGAAAAAGATAGGTTAAAGAGTTGAAAAATAATTGTTATTTAGTATTTATCAGAACAAAGGGAACTCTCACTGCCTCATATTTAAAGTATACAACCTCCTTGTTGTTGTAGCACGGGTGGCTAAATGTAGCATGTAGGTTCTGTGTCTGGTGGATGATGTTGTGAATTTAAAGGGGCACCACCTGCCGTGATAGATATCAGGGTCTTGTATCGCCGCGCAGACAGCTGAGCACTTCAGGTGCCAAAGAGCCTTCCATGACATTGAGCGTTAAGCAGATTTTTGCCAGCAGTTCCATTTgatcacttctccctctctcagaccCATACGGAATCATCCACTCGATATAAGCACGATTTATTCAACTTCTTGATGAAGAAAGACATGCTCAAATGTGCCATGATTGAAGAGACTTGTGATTTAGAACAATGACACCTAACTTAAAAGACCATTCGATCACATCTGTAACATTCCTGTTGTAAAGAACGTGGATAGTGTGTGTCAGTCTTGGGTTCTCAGGGCAAAGCGGATGGAGGTTGTGTTGTTCTCATGTGGACCAGTCGGCAGTGTGACCTTGCATTAGTGCATATGCTCACAGCAGGGTTACTGGTTGGGGGCATGATCTGTCAGCCTTTGTTTATGAAGCTCACACAGCACAGGACTGTAAGATAACATATTTGATGTAATTAGTGGTCAGTAATAACACACTATAAGCGTCAGGAGAAAGAGTgtttggttttggagcagttgttTAGATTTTTTGTAGTATGTTATTTTTGTGATAATATTTGTTTTAATATGTCTGCTGATGTCTATATTtccaaaacataaaacacatGAAATTATAAAACTTGTGAACAGTCATCTAGTTCTGGATTAGATATGGGTTAGATAGGACAGATATGGGTTAGATATGATAGATATGGGTTAGATAGGACTGATATGGGTTAGATATGATAGATATGGGTTATATAGGATAGATATGGGATAGATATGATATATATGGTTTCAATATGATAGATATGGGTTAAATAGGATAGATTTTGGTTAGATATGATATATGTGGGTTAGATGCGATATATATGGGttcccactcaggagactgaaaagatttggtatgggtcctcagatcctcaaaaggttctacagctgcaccactgagagtatcctgactggttgcatcactgcctggtatggcaattgctcggcctcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034577.1 True 1803 mRNA 0.44 3 14997879 15016727

Neighbor

gene id symbol gene type direction distance location
LOC110535331 LOC106579535 coding upstream 79716 14905428 ~ 14918163 (+)
LOC110535327 LOC106579529 coding upstream 115687 14840653 ~ 14882192 (+)
trnay-gua-3 NA coding upstream 167018 14830776 ~ 14830861 (+)
crf crf coding upstream 203185 14793195 ~ 14794694 (+)
LOC110535322 LOC106579526 coding upstream 282456 14665667 ~ 14715423 (+)
abhd10b abhd10 coding downstream 252885 15269612 ~ 15277101 (+)
tagln3b tagln3 coding downstream 261747 15278474 ~ 15282213 (+)
LOC110536556 LOC106590436 coding downstream 266568 15283295 ~ 15284424 (+)
spata13 LOC106579541 coding downstream 268315 15285042 ~ 15320246 (+)
tmprss7 tmprss7 coding downstream 303855 15320582 ~ 15337190 (+)
G947516 NA non-coding upstream 6682 14990946 ~ 14991197 (+)
G947499 NA non-coding upstream 15502 14982138 ~ 14982377 (+)
G947475 NA non-coding upstream 31864 14965632 ~ 14966015 (+)
G947474 NA non-coding upstream 32391 14965275 ~ 14965488 (+)
G947460 NA non-coding upstream 40507 14957143 ~ 14957372 (+)
G947594 NA non-coding downstream 66124 15082851 ~ 15083053 (+)
G947599 NA non-coding downstream 72365 15089092 ~ 15089404 (+)
G947648 NA non-coding downstream 145007 15161734 ~ 15172265 (+)
G947654 NA non-coding downstream 159736 15176463 ~ 15176755 (+)
G947661 NA non-coding downstream 171677 15188404 ~ 15188626 (+)
G947301 LOC106590396 other upstream 110597 14886614 ~ 14887282 (+)
G946999 NA other upstream 413830 14582543 ~ 14584049 (+)
G946692 NA other upstream 596235 14401254 ~ 14401644 (+)
G946690 NA other upstream 597606 14399862 ~ 14400273 (+)
LOC110535338 LOC106579503 other downstream 420954 15375660 ~ 15478222 (+)
rnf6 LOC106579512 other downstream 571103 15587284 ~ 15593900 (+)
atp8a2 LOC106579514 other downstream 635247 15594416 ~ 15660363 (+)
boc LOC106579445 other downstream 730646 15747150 ~ 15800515 (+)

Expression


Co-expression Network