LOC110535332 (LOC106579536)


Basic Information

Item Value
gene id LOC110535332
gene name LOC106579536
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15080524 ~ 15082767 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620269.2
ACACCCAGactgagaaggacagagagatacagagggaggaggtggagagcaCTCGGGACTGTTTGTTAAAATCCCATTAATTACATCGTTAACCTGattgggtagacagagggggcagagagagtgcgagagagcgGTATCCCAATAGGCAAATCCTCTTCATATTAACCCGCCTCGAGATAATGATGTAAAAGACTCCCCCGTTTTTGCGCGTGATGCTGATCGCCGTGGAGATCTGCTGAAAGTGAATCAGAGCGAATAAGCAGCGTGagcgcagagagggagagagagagagccgatgCGTCTCCACATCTCAGTTGACAAGTCGAGCAATAATAAGGCATCAAGACCAACTCACTCTCTCTGACAGCGCACAAAGCAAGAAACTTATACAAGAACCGTCGCCGGGAGAAAGTCTCCAGAAACTGCCACCCACTAAAGCAGAGTCTGGAGGAGAGGACAAGTGCTATGGACAGGAGAATGAACTTGAACGGACCGGGAGATATTTTCCACAAAACACTCAGTGCTGTCTCCAACAGAAAGATGGACTCCTTCAGGTCAGCGGCTGGTGTTGACCTGCCGGGGTCCAGGGACCGCCAGTCACCGATCAGCTGTTTCGACCAGACCGACTCAGACCCGATTCAACCCGGTGGACTGGCTGGCGGTCGAGGGGGACCGTTGGGTCTGCCGACCGGATCTTTGTGCGTCAAGTTTGGCGAGAGCAGCAACAGGACCTCGGCGGCCGAGAGCAGTGGCGGGGAGCAGAGCCAGGACGATGACAGCGACGGCAGATGTGAGATGGTCCTCCTGGCCGATGGGAGAACGGTGGCCGCCGGTAAACCGGAGGGAGGTAAGAAAAATAAAGAGCAGAAAACACTCAGACTAAACATCAATGCGCGGGAGAGACGAAGGATGCACGACCTGAACGACGCGCTGGACGAGCTGCGCTCTGTCATCCCGTACGCGCACAGTCCCTCAGTGCGGAAACTCTCCAAAATCGCCACTTTGCTACTCGCCAAAAACTACATCCTCATGCAGGCGCAGGCTCTGGAAGAGATGAGGAGGCTGGTGGCCTATCTGAACCAGGGTCAGGCCATCTCAGCGGCGTCCATACCCGCCACAACGGCCCTTGCTGCTCCGGGTCTACCGGGTCTGAGCGCGGGGATAAGTGCGTACGACCAGCCGCCTGTGTACCCCTTCACCACCGGATTGGCCGGGTCTTCCTGCCCCGACAAATGTGTCCTTTTCAACAACGTCACCTCGAGCCTGTTTAAACAATGCACTGACAAGCCTTAACAGCATCACAACAACAAGCCGGTACCAGACTCAGAGAAGCACATGCAAGAGAAAAACAACACCACTTTTTAAAACACATGGCGACTTTGGAAAGGTTGCAAGTCAGTGTAGACCATGAAGTAAAGCTGATGATCAGTAGGCCTACTTTTATAACATTTACAAATGCATTCAAAGAAGCGCTTTTTTGTTCAGACAATACTTGATTGTGTATATAAAGCATCATTTAAGTGCTGGTATGAATGAAAGTGAAAAACCAAACAGAAGTTTAGGAGCGCAAGTGGTGCTGGATTGACAATTGTTAATTACTTGCTCAAATATGGACGCTGTATGGAGTGTTGACCTGACAACATGCGACCATTTCACTTGAATAGACGGAACATTAGTTAATATAAGAAACCACAAACTTGCTGCTTTATGAACTTGATTTATATGAAGGCGTTTGCTTATTGGTCGTTATTTGGTGAACTTTTGAGAATTCACTGAGCATGCCATAGGCATGTCCTGAGGGAAAGCAAAGTGAACTGAGTTGAAGACGAAATATTTGTTTTCATCTCTCACCCCAAAGTATATTGTcatttaaatactttttttttatgaAACACTTGCGCTACATTGACAGTTTCTTTGGCACTGTAATATAATGGCATTTGAGTCTCTAATGGCCTGTATCTTCAGTTTACGTCCTTTTCGATTTTTTTCCTTTTATTTATTGATTTGAAACATTTTATTTGCATGGTGGTACACTGTATACTGCATAGCGACGTGTCTGATTTGCGTAATTTCTTATACACTCTTGCAATAAGGCCGAGGTCTTGAGGGATCAGGCACGCTGTCAGGTCAAGCAGTGCATTATTGTAGATTCattagttactgtactatatgaaTAAAGAGGGCCAtttgtatgtgtttatgtgttggaaagctttattaaaatattTTGAACATAAC

Function

NR:

description
PREDICTED: class E basic helix-loop-helix protein 22-like

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09086 BHLHB4_5, BETA; class B basic helix-loop-helix protein 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620269.2 True 2244 mRNA 0.47 1 15080524 15082767

Neighbor

gene id symbol gene type direction distance location
mtfr1 LOC106579534 coding downstream 182945 14884317 ~ 14897579 (-)
LOC110535328 dnjc5 coding downstream 239865 14830974 ~ 14840659 (-)
LOC110535326 NA coding downstream 254925 14815506 ~ 14825629 (-)
LOC110536555 NA coding downstream 269549 14797797 ~ 14810975 (-)
LOC110535325 LOC106579528 coding downstream 347494 14731383 ~ 14733030 (-)
LOC118937468 NA coding upstream 136239 15219006 ~ 15221030 (-)
LOC110535333 LOC106590438 coding upstream 168504 15251271 ~ 15268657 (-)
pan3 pan3 coding upstream 356648 15439415 ~ 15455911 (-)
pdx1 pdx1 coding upstream 397731 15480498 ~ 15485495 (-)
si:ch211-140b10.6 polr1d coding upstream 409070 15491837 ~ 15497193 (-)
G947672 NA non-coding downstream 4863 15075387 ~ 15075661 (-)
G947549 NA non-coding downstream 58026 15022073 ~ 15022498 (-)
G947547 NA non-coding downstream 58723 15021537 ~ 15021801 (-)
G947511 NA non-coding downstream 91475 14988816 ~ 14989049 (-)
G947439 NA non-coding downstream 144448 14935872 ~ 14936076 (-)
G947683 NA non-coding upstream 6343 15089110 ~ 15089330 (-)
G947666 NA non-coding upstream 11726 15094493 ~ 15095231 (-)
G947664 NA non-coding upstream 13410 15096177 ~ 15158908 (-)
G947726 NA non-coding upstream 93996 15176763 ~ 15177067 (-)
G947727 NA non-coding upstream 95223 15177990 ~ 15178240 (-)
ly86 NA other downstream 764838 14308595 ~ 14315733 (-)
G945345 LOC105027308 other downstream 2686386 12393397 ~ 12394138 (-)
LOC110536549 LOC106579607 other downstream 2721645 12348249 ~ 12366127 (-)
LOC110536548 LOC106579654 other downstream 4000007 11061866 ~ 11143146 (-)
G947750 NA other upstream 123664 15206431 ~ 15209597 (-)
G947894 LOC106579543 other upstream 283183 15365950 ~ 15366301 (-)
LOC110535357 LOC106579444 other upstream 718008 15800721 ~ 15810494 (-)

Expression

LOC110535332(LOC106579536) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 6.
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LOC110535332(LOC106579536) Expression in each Bioproject

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LOC110535332(LOC106579536) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 500.
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Co-expression Network