tagln3b (tagln3)


Basic Information

Item Value
gene id tagln3b
gene name tagln3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15278474 ~ 15282213 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620273.2
TGTCTCATTCTGAATGAGACATCTCGAGGGAGCCTCCTCGTGGCGCCCGCACATATAAAACCAGTGGTTTGCAACTCCCCGACACTGAGTCCAGCCTCGCCCCACGCACGCGTCACCGCTTAATGCATGCTTCAGCAGTTCAGCATCCTCTGCCCCGACCAGCTCAGCGGAATTAACCGCACAACAGCTACCGGACAAAATAACTCTCCTCTTCTTTATACAGGTGCAGGCTGCCAGTGCTGAAACTGCTCCAGGGTGTTGGTCAGCAGAGCTGCAGACTACTTGTCCGTCTGTCTGGGTGAGCAGGACAGAAGGAGCAATGGCTAACAGGGGACCCAGTTACGGGCTGAGCAAGGAGGTGCAGGAGAAGATAGAGCTGAAGTATAATCTAGACTTGGAGGCCCGGCTGGTGGACTGGATCGTAGCTCAGTGTGGGGGGAACCTGGAGAGACCACAGCCAGGCAGACAGAACTTCCAGACATGGCTGATGGATGGAACAATTCTCTGTAGGCTCATCAATAGCCTGTACCCGCGTGGTAAGGAGCCAATCAAGAAGATTCTGGAGACACAGATGGCCTTTAAGCAGATGGAGAAGATCTCCCAGTTCCTGCAGGCAGCAGAGGTCTACGGAGTCATCACCACAGACATCTTCCAGACCGTGGACCTGTGGGAAGGGAAGGATATGGCCGCAGTGCAGAGAACCCTGATGGCCCTAGGTAGTGTCGCCCTCACCAAGGACGATGGACATTACCGTGGCGACCGCGACTGGTTCCACAGGAAAGCCCAGGGTTACCGGCGAGAGTTCTCTGAGGACCAGCTTCGTCAAGGCCAGAGTCTGATTGGTCTGCAGATGGGAAGCAACCGCGGGGCCTCTCAGTCTGGCATGACAGGCTACGGATCGCACCGCCAGATCATGTAGAGACACCAGCCAGCCGCTCAGCCAGCTGCCAGCCTCTCCCTCTGCATGGCTGTGTACTCCAGAAGAAAGCTCCATCACGCCCCTGGAACCTCATGATATGACCCAACCACTTTTCCCCCTTCCCCAGAAGCACTAGCAAATCACacgagcacacacatacacacacacacacacacacacacacacacacacatgcttttaCTGTTCATCCTCAACCCAAACAGAGTGCTCCTTATACCCCAACCACAATTCTATAGACCTCAGTGCTTTCTGCTTCCCCCACCCCCGCTCTCCATCCAAATGGTCCCACTCTCTCCATTCATATGGTcccactctctccatccatatggtcccactctctccatccatatggtcccactctctccatccatatggtcccactctctccatccatatggtcccactctctccatccatatggtcccactctctccatccatatggtcccactctctccatccatatggtcccactctctccatccatataGTCCTGCTAGCCATTCCCTTCAGTGGATGAAGTCTTCGTAATTCAGTCGGTACAGAGAACCCAAGATTGAAGTCATCCCTCTACAAAACAAGCAAATAGCATTTTACACTTCTAACAAATATTACAGCACGAAACGTTATAGCATGTTACATCTTTTAATTAACTGTTTGTTTgtatgtacagtaggtgtgtctGAGTCATTGTATAGTCCTTTGGGAGGGTTTGCTATACCTCATGAAAAGTTTAATGTGTAACCGAATGGAACTCGGTGAACGATGAGGCCCCTGTGAAGACTTTGCGGTAACTTCTGTAACCAAATGACCATCACATTGTGCCTGGTTAATATAGTAAAGGGACCATAAACTATGCCTTGTATAAGAGACGCCACCCACCCTAATGCAGAGGAATTCATTGACCTAAATTCAGTTCTGTTTTTGTACTAACATTCTGTGCTGTGCATTTATTACTTATGTATAATTGATGTAATGTACTTGTATGTGCCCACTGTCCATGTGTGTTTCAGCCAATCCCATGATTGTTAAAGACCCACAGTATGAAAGTGACAGTAGGATCATTTTCAGGCCTGATATTGCttgaatgtatttttttccccttcaATGTAATTTGTCATGTTTACATAAACAAATATGTTTATATCTGAATCATTGTGTGTAGAAAACATAATAAATTAGGTGAAAACTGA
>XM_036934980.1
TGTCCCTGTGCAGGACGGGTGCCAAGGACCACACCCATTCCGGCAAGTGCTCTGGTTCTCTGGGGATGTGCCTGTCCTGTAAGGGACACAGTTGCCATTAGGGAGAAAGCAGAGGATGGAGTGTGAGGAAAGGACGTGAAATTAGGAAAACAACAGGTGATGCAGTTTATGATAGAAAAACGACGACAGGTAGACTAATGGTtaaaagcgttgggccagtaagcgAAAAGTTCGAATCCCGAGCCGATTAGGTGAAAAACCTTATATTGAGCAAGGCACTAACCCTAATTTATCATCAGGTGCAGGCTGCCAGTGCTGAAACTGCTCCAGGGTGTTGGTCAGCAGAGCTGCAGACTACTTGTCCGTCTGTCTGGGTGAGCAGGACAGAAGGAGCAATGGCTAACAGGGGACCCAGTTACGGGCTGAGCAAGGAGGTGCAGGAGAAGATAGAGCTGAAGTATAATCTAGACTTGGAGGCCCGGCTGGTGGACTGGATCGTAGCTCAGTGTGGGGGGAACCTGGAGAGACCACAGCCAGGCAGACAGAACTTCCAGACATGGCTGATGGATGGAACAATTCTCTGTAGGCTCATCAATAGCCTGTACCCGCGTGGTAAGGAGCCAATCAAGAAGATTCTGGAGACACAGATGGCCTTTAAGCAGATGGAGAAGATCTCCCAGTTCCTGCAGGCAGCAGAGGTCTACGGAGTCATCACCACAGACATCTTCCAGACCGTGGACCTGTGGGAAGGGAAGGATATGGCCGCAGTGCAGAGAACCCTGATGGCCCTAGGTAGTGTCGCCCTCACCAAGGACGATGGACATTACCGTGGCGACCGCGACTGGTTCCACAGGAAAGCCCAGGGTTACCGGCGAGAGTTCTCTGAGGACCAGCTTCGTCAAGGCCAGAGTCTGATTGGTCTGCAGATGGGAAGCAACCGCGGGGCCTCTCAGTCTGGCATGACAGGCTACGGATCGCACCGCCAGATCATGTAGAGACACCAGCCAGCCGCTCAGCCAGCTGCCAGCCTCTCCCTCTGCATGGCTGTGTACTCCAGAAGAAAGCTCCATCACGCCCCTGGAACCTCATGATATGACCCAACCACTTTTCCCCCTTCCCCAGAAGCACTAGCAAATCACacgagcacacacatacacacacacacacacacacacacacacacacacatgcttttaCTGTTCATCCTCAACCCAAACAGAGTGCTCCTTATACCCCAACCACAATTCTATAGACCTCAGTGCTTTCTGCTTCCCCCACCCCCGCTCTCCATCCAAATGGTCCCACTCTCTCCATTCATATGGTcccactctctccatccatatggtcccactctctccatccatatggtcccactctctccatccatatggtcccactctctccatccatatggtcccactctctccatccatatggtcccactctctccatccatatggtcccactctctccatccatatggtcccactctctccatccatataGTCCTGCTAGCCATTCCCTTCAGTGGATGAAGTCTTCGTAATTCAGTCGGTACAGAGAACCCAAGATTGAAGTCATCCCTCTACAAAACAAGCAAATAGCATTTTACACTTCTAACAAATATTACAGCACGAAACGTTATAGCATGTTACATCTTTTAATTAACTGTTTGTTTgtatgtacagtaggtgtgtctGAGTCATTGTATAGTCCTTTGGGAGGGTTTGCTATACCTCATGAAAAGTTTAATGTGTAACCGAATGGAACTCGGTGAACGATGAGGCCCCTGTGAAGACTTTGCGGTAACTTCTGTAACCAAATGACCATCACATTGTGCCTGGTTAATATAGTAAAGGGACCATAAACTATGCCTTGTATAAGAGACGCCACCCACCCTAATGCAGAGGAATTCATTGACCTAAATTCAGTTCTGTTTTTGTACTAACATTCTGTGCTGTGCATTTATTACTTATGTATAATTGATGTAATGTACTTGTATGTGCCCACTGTCCATGTGTGTTTCAGCCAATCCCATGATTGTTAAAGACCCACAGTATGAAAGTGACAGTAGGATCATTTTCAGGCCTGATATTGCttgaatgtatttttttccccttcaATGTAATTTGTCATGTTTACATAAACAAATATGTTTATATCTGAATCATTGTGTGTAGAAAACATAATAAATTAGGTGAAAACTGA

Function

symbol description
tagln3 Predicted to be involved in central nervous system development. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be active in cytoskeleton.

NR:

description
transgelin-3-like isoform X2

GO: NA

KEGG:

id description
K20526 TAGLN; transgelin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620273.2 False 2132 mRNA 0.49 5 15278474 15282213
XM_036934980.1 True 2208 mRNA 0.48 5 15279008 15282213

Neighbor

gene id symbol gene type direction distance location
abhd10b abhd10 coding upstream 1373 15269612 ~ 15277101 (+)
LOC118937318 NA coding upstream 261747 14997879 ~ 15016727 (+)
LOC110535331 LOC106579535 coding upstream 360311 14905428 ~ 14918163 (+)
LOC110535327 LOC106579529 coding upstream 396282 14840653 ~ 14882192 (+)
trnay-gua-3 NA coding upstream 447613 14830776 ~ 14830861 (+)
LOC110536556 LOC106590436 coding downstream 1082 15283295 ~ 15284424 (+)
spata13 LOC106579541 coding downstream 2829 15285042 ~ 15320246 (+)
tmprss7 tmprss7 coding downstream 38369 15320582 ~ 15337190 (+)
LOC110536557 LOC106579543 coding downstream 60148 15342361 ~ 15367543 (+)
LOC110535338 LOC106579503 coding downstream 93447 15375660 ~ 15478222 (+)
G947772 NA non-coding upstream 31599 15246427 ~ 15246875 (+)
G947765 NA non-coding upstream 37032 15241222 ~ 15241442 (+)
G947762 NA non-coding upstream 43714 15234283 ~ 15234760 (+)
G947761 NA non-coding upstream 45536 15232736 ~ 15232938 (+)
G947760 NA non-coding upstream 46149 15232010 ~ 15232325 (+)
G947810 NA non-coding downstream 55291 15337504 ~ 15337795 (+)
G947811 NA non-coding downstream 55711 15337924 ~ 15338191 (+)
G947813 NA non-coding downstream 57454 15339667 ~ 15339910 (+)
G947893 NA non-coding downstream 83074 15365287 ~ 15365605 (+)
G947301 LOC106590396 other upstream 391192 14886614 ~ 14887282 (+)
LOC110535322 LOC106579526 other upstream 608718 14665667 ~ 14715423 (+)
G946999 NA other upstream 694425 14582543 ~ 14584049 (+)
G946692 NA other upstream 876830 14401254 ~ 14401644 (+)
G946690 NA other upstream 878201 14399862 ~ 14400273 (+)
rnf6 LOC106579512 other downstream 305617 15587284 ~ 15593900 (+)
atp8a2 LOC106579514 other downstream 369761 15594416 ~ 15660363 (+)
boc LOC106579445 other downstream 465160 15747150 ~ 15800515 (+)

Expression


Co-expression Network