LOC110536556 (LOC106590436)


Basic Information

Item Value
gene id LOC110536556
gene name LOC106590436
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15283295 ~ 15284424 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110536556
ATGATGGGTGTTAGACTCAGAGTCACTCTCTTGCTCCTCCTGCTGGCTGTGAGGTGCATAGCACATGAAGAATTCAAGAAGAACTTATGTGTTTGTGGATACCCAGGAATACCAGGAGACCCAGGCCACAACGGAATGCCAGGCCGAGATGGACGAGACGGGTTCAGAGGTGACAAGGGAGACCGAGGGGAAATCAGCATCACCGGACAAACAGGACAGAGTGGCCCCAAAGAAGACAAGGGATCTGCAGGTACGGCTGGCCTGGCAGGAATCAAGGGAAAATGGGGTGAGAATGGAGAGAAGAGGCCACCGGGGAAGATGGGGCCCCAAGGAGTCTCAGGGCACATGGGCCTCAAGGAGATCAGGTTACCTGAGCGAGGCATCCAAGGGCCCTTGGGACCCCCAGGACGACCAGGTCCGAAGGGAGATCTCGGCCCCCCAGGGTTCAAAGGCAACATTGGTTACGACGGAGAGCAAGGGAATCAGGCGGCGAGACAGGGGACaagggggagaagggggacaCATCGGTTTAACCGAATACACCAAACTCCCACCGGAGAACATGCCGATCAGGTTCGACACGGTGATCTACAACAGGCAGAACCATTACGACTCACAGACCGGACGGTTCACCTGCGCTCTGGCTGGGGCCTACTACTTCACCTACCACATCACTGTGTTCTCCCGTGATGTAAAAGTAGCATTAGTGAGAAACGGGTTGAAGGATAACTACACGAGCAGTTATCCACACCATGGATAACTACACGAGCAGTGAGGACCAGGTAGCAGGCGGGGCTGTCCTGCACCTGAAGAAGGGGGACAAAGTGTGGCTGCAGATGGCTCTTTAACGGGCTGTTtgctgatgaagatgatgatacaaccttctctgggttcctgctcttcgGTGCAGATTAG

Function

NR:

description
PREDICTED: complement C1q and tumor necrosis factor-related protein 9A-like

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110536556 True 915 mRNA 0.55 3 15283295 15284424

Neighbor

gene id symbol gene type direction distance location
tagln3b tagln3 coding upstream 1082 15278474 ~ 15282213 (+)
abhd10b abhd10 coding upstream 6194 15269612 ~ 15277101 (+)
LOC118937318 NA coding upstream 266568 14997879 ~ 15016727 (+)
LOC110535331 LOC106579535 coding upstream 365132 14905428 ~ 14918163 (+)
LOC110535327 LOC106579529 coding upstream 401103 14840653 ~ 14882192 (+)
spata13 LOC106579541 coding downstream 618 15285042 ~ 15320246 (+)
tmprss7 tmprss7 coding downstream 36158 15320582 ~ 15337190 (+)
LOC110536557 LOC106579543 coding downstream 57937 15342361 ~ 15367543 (+)
LOC110535338 LOC106579503 coding downstream 91236 15375660 ~ 15478222 (+)
urad urad coding downstream 194161 15478585 ~ 15479868 (+)
G947772 NA non-coding upstream 36420 15246427 ~ 15246875 (+)
G947765 NA non-coding upstream 41853 15241222 ~ 15241442 (+)
G947762 NA non-coding upstream 48535 15234283 ~ 15234760 (+)
G947761 NA non-coding upstream 50357 15232736 ~ 15232938 (+)
G947760 NA non-coding upstream 50970 15232010 ~ 15232325 (+)
G947810 NA non-coding downstream 53080 15337504 ~ 15337795 (+)
G947811 NA non-coding downstream 53500 15337924 ~ 15338191 (+)
G947813 NA non-coding downstream 55243 15339667 ~ 15339910 (+)
G947893 NA non-coding downstream 80863 15365287 ~ 15365605 (+)
G947301 LOC106590396 other upstream 396013 14886614 ~ 14887282 (+)
LOC110535322 LOC106579526 other upstream 613539 14665667 ~ 14715423 (+)
G946999 NA other upstream 699246 14582543 ~ 14584049 (+)
G946692 NA other upstream 881651 14401254 ~ 14401644 (+)
G946690 NA other upstream 883022 14399862 ~ 14400273 (+)
rnf6 LOC106579512 other downstream 303406 15587284 ~ 15593900 (+)
atp8a2 LOC106579514 other downstream 367550 15594416 ~ 15660363 (+)
boc LOC106579445 other downstream 462949 15747150 ~ 15800515 (+)

Expression


Co-expression Network