LOC110536557 (LOC106579543)


Basic Information

Item Value
gene id LOC110536557
gene name LOC106579543
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15342361 ~ 15367543 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934987.1
ATCCGACCCGCTCAGGTCCGGTTTCTGCGCTTTTTCAAAGGAACTTTAGGGTCGCAAAAAGGATCTCCTCCCTCTGTAATTTCTATGCCTGGGGTATCATTGCATATCGCCGCCACGGAGCCAAACGGGACAGTGCCATGAGGACTTTCCCTAAAAGCAGAACTTGTGAGGTTTACAGTGTCTCGGGATATGGACATTGTTCTGCTGTTGGTTCACCTGCACAGGGGGTCATTACAGAGCCCACCCAGTCACTTAGCCCCCCCACGGagtccaaggctcagagcgactGGAAGGACCAGGGGGACAAGGGAGGCCAGGGGGACCAGGGAGGCAGAGGACCTGTCTGTGTGGGAAGGAGGAGGTGGGCTCTGGGGGTCCTACCCCTCCTGCCCTTCACTGTCGCCATTGCACTGAGTCTCCATTTCTTTACATCTCCACCCCCTTCAGTGTTCTACCTTGGTGGCAGCGTGGAGTTTCCCAACATTAGCTTCTCATTGGACCTGACTGACCCCGCCTCTCCACAGTTCCGCCTTCAGGCTCAGGCTCTAAGCCTTTATTTCTCAGAGCTGTATGAGTCCTCTCCCTGGAGCGCCTACTACCTACACTCAGGAATTACTGCCTTCAGtgaAGGAGCAGATGGACTGAACGTGTTCTACTGGAGTAAGTTCTCGGGCCCTGGGGGCGTTGCCATGGAGATCCAGCGGTGGAGTACAAAGCGTGTACAGCGCCGTCTCCCTGGCACCAATAAGCTGCTGTACAGCCAGAACGAGGAGCGCTATTACATGGAGAGAGACGACGAATCACTCAACCTGCTGGGTTTAGACTATGACTATGATTCAGATGACAAGGCAGATAAAATCAAGAACCCCAACTCCCTGCAGAACTCTCTACAGAGCGGCAAGTGGCAGCTGGGATTCCAAGCAATGTCCTTTGACCTCTATGCGAAGTACGGTAACAACCGTACCCTGAGCTTGGTGAGTCCCAAGAAGCCATACTACCAGTGGCGCCTTCGTGTCCCGTCAGGTCATGTGGTGCGTCTGGTCGTCCTCACCCTGCACGGAGCCACACCCGGAAGCTGCTCCTCCCACAAACTGTCTGCCTACGACTTCCTGTTGCCACTACAGAACAAGATCATCGCCAGGTGGTGtggtctcccagtgtctggcTCATCTCCTGTAATGAAGCTGACGTCGTCTGGTAACGTGATGCTGGTCACCTTCTCCTtcagcagacagagagatggagccaTCTTCAAGGCCTACTTCCAGGCCATCCCCAAAGCAGGTTGTGGAggctctctgtcctcctggaaTGGCTCTCTGTCCTCTCCGTACTACCCTGCCCACTATCCCCCAAACATCGACTGCAGCTGGACCATACGGGCGCCGTTGCCTGGATACCTGATCTCCATGACAATTGTGACGTTGAATATCCAGGACTCTTCGTCTTCGGACGGCTGTGAGAAAGACTGGCTGGACGTTGGAGGGGTCAAGCTGTGTAACCCCATGACTGACAGCAGCAGAAAGAAAACCTactcctctcccgtctctctacACTTCCACTCTGATGAGTCTGTCACTCACAAGGGCTTCTACCTTCTCTACAGAGCCTTCTCCCCTGAGAGCAcatgTCCTCGCCAGTTCCGCTGTGGGGATGGGAGGTGTGTTCCTCTCAGGAAGGTGTGTGACGGAGTCAGAGACTGTTCAGACGGACGGGACGAGGCTAAATGCTCGACCTGTCGTCCAGGTGAGGTGTATTGTGGGAACGGTCAGTGCCGGCCTCACAGCAGCCAATGTAACAGCCAGAGTAAATGTGGAGATAGCAGCGAGGAGGCCGACTGTGCAGGTCAATGCTACCACATGTGCCACAACAAGGTGTGTGTCTCCAAGTCCTCCGTTTGTGATGGTGTCATAGACTGCAAGGACCGCAGTGATGAGATCAACTGCACTAAAGCATTCCATAAGGGCTGCTCTCCATCCTCCTATAAGTGTGCCAATGGGAAGTGTGTGAATAAGATCAACCCAGAGTGTGACGGCGTCAAAGACTGTTCTGATGGATCAGACGAGACGCGCTGCGGTTGTGGCACCCGGCCCAGGAAGCGTGCTAAGATAGTGGGCGGGTCTGATGCAGGGACGGGGGCATGGCCATGGCAGGTCAGTCTACAGATGGAGCGCTATGGGCATGTGTGTGGAGCGACCCTGGTCACCAGCCGCTGGCTCATCTCTGCTGCACACTGCTTCCAGGACTCTGACACCATCAAGTACTCTGATGCGCGGTCTTGGCGTGCCTACATGGGCGTGCGTGTGATGAACACGGCCAGCAACGCTGCAGCCACCAGACAGATCCGTCGTATCATCCTCCACTCCCAGTACGACCAGTTCACCTCTGACTACGACATCGCCCTGCTGGAGCTCAGCACCCCTGTCTACTTCAATGACTTGGTACAGCCCGTCTGTGTCCCCGCCTCTTCCCACGCCTTCACCACCGGGACCAGCTGCCACGTCACGGGCTGGGGGGTCCTGATGGAGGATGGTGAGCTTGCATCTCTGCTGCAGGAGGCCACAGTGAAGATCATCAACAGGAACAACTGTAACAAGCTATATGAGGACGCTGTCACTCCCAGGATGCTGTGTGCTGGCAACCTGCAGGGAGGAGTGGATGCCTGTCAGggtgaCTCAGGGGGTCCTCTGGTGTGTCTAGAGAGGGGTCGGCGGTGGTTCCTGGCAGGGATCGTGAGCTGGGGGGAGGGGTGCGCTCGGCAGAACCGCCCTGGAGTCTACACACAGGTCACCAAGTTCACGGACTGGATCCACCTGCAGACTAAAGGACAGgtctgacagactgacagacagacgtcTGGATGACATCAGCATGTGAACAGACTCAGTGGCTGGCACCATGTGACTGTAACGGGGGTAAAGAGACATCACCACGCAGCCCCTGCTTTATGATTTATACCAGGCCCCATGTCACTGACATCATTATCAACTGTtaccccccaccccatcataccCACCCCCTCTTCATGTATGGCCAAGCACCTCTCTTTGTCTCCTCATGGTTTCCATTGTCCTCCTGACTGTTCCTCTCTCCCCACTTGTCCCTTATCATCCCAGTGGTCTGTCTGTCCTgactgttcccctctctccacctcccctgtCCCGACTCCTGATCTTCCCAGTGGTGTATTTGTTCTCTGTGAAGTGACCACTTGATGTGCCTGGTCTATCTCATGTCCGCACTGCACACAGCAATTGAAGTGGAATGAGTTCTCTATGTCGTAGTACAATGTGCTGTAGCGAGTGTGTTATTATGTCTATTTACATTGTGTGTGCATGACTGTATTTGTGAACATATGTACTGTATCATTGTatgagtatatacagtaccattcaaaagtttggacacacctactcattcaagggttttgctttatttttactattttctacattg
>TU1080820
ctctctctctctctctttctctgtctctctctttatctctttatctctctctctctctttctctccctctctgcctctctctctctctctctctcactcacgctctgtctctctgtgactacAGCTCCCAGAATCCTTTCTTTAGTGTGTATTCTTGCTTCTCATGCCATTTAAAACTCAATTTTGTACCTACCATATTGTATGTATTTGTGTACAGGTTTAGACTATGACTATGATTC
>TU1080821
CGTCAGGTCATGTGGTGCGTCTGGTCGTCCTCACCCTGCACGGAGCCACACCCGGAAGCTGCTCCTCCCACAAACTGTCTGCCTACGACTTCCTGTTGCCACTACAGAACAAGATCATCGCCAGGTGGTGtggtctcccagtgtctggcTCATCTCCTGTAATGAAGCTGACGTCGTCTGGTAACGTGATGCTGGTCACCTTCTCCTtcagcagacag

Function

NR:

description
suppressor of tumorigenicity 14 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934987.1 False 3456 mRNA 0.54 19 15342361 15367543
TU1080820 False 239 lncRNA 0.41 1 15353693 15353931
TU1080821 True 218 lncRNA 0.57 2 15354252 15355812

Neighbor

gene id symbol gene type direction distance location
tmprss7 tmprss7 coding upstream 5171 15320582 ~ 15337190 (+)
spata13 LOC106579541 coding upstream 22115 15285042 ~ 15320246 (+)
LOC110536556 LOC106590436 coding upstream 57937 15283295 ~ 15284424 (+)
tagln3b tagln3 coding upstream 60148 15278474 ~ 15282213 (+)
abhd10b abhd10 coding upstream 65260 15269612 ~ 15277101 (+)
LOC110535338 LOC106579503 coding downstream 8117 15375660 ~ 15478222 (+)
urad urad coding downstream 111042 15478585 ~ 15479868 (+)
lnx2a lnx2 coding downstream 129918 15497461 ~ 15518161 (+)
usp12a usp12 coding downstream 162632 15530175 ~ 15534688 (+)
LOC110535348 LOC106579510 coding downstream 172135 15539678 ~ 15547074 (+)
G947813 NA non-coding upstream 2451 15339667 ~ 15339910 (+)
G947811 NA non-coding upstream 4170 15337924 ~ 15338191 (+)
G947810 NA non-coding upstream 4566 15337504 ~ 15337795 (+)
G947772 NA non-coding upstream 95486 15246427 ~ 15246875 (+)
G947765 NA non-coding upstream 100919 15241222 ~ 15241442 (+)
G947896 NA non-coding downstream 736 15368279 ~ 15368648 (+)
G947898 NA non-coding downstream 1377 15368920 ~ 15369398 (+)
G947951 NA non-coding downstream 60387 15427930 ~ 15428384 (+)
G947952 NA non-coding downstream 63044 15430587 ~ 15430880 (+)
G947956 NA non-coding downstream 68783 15436326 ~ 15437618 (+)
G947301 LOC106590396 other upstream 455079 14886614 ~ 14887282 (+)
LOC110535322 LOC106579526 other upstream 672605 14665667 ~ 14715423 (+)
G946999 NA other upstream 758312 14582543 ~ 14584049 (+)
G946692 NA other upstream 940717 14401254 ~ 14401644 (+)
rnf6 LOC106579512 other downstream 220287 15587284 ~ 15593900 (+)
atp8a2 LOC106579514 other downstream 284431 15594416 ~ 15660363 (+)
boc LOC106579445 other downstream 379830 15747150 ~ 15800515 (+)
G948524 NA other downstream 686522 16054065 ~ 16054638 (+)
G947893 NA non-coding downstream 9475 15365287 ~ 15365605 (+)

Expression


Co-expression Network