pdx1 (pdx1)


Basic Information

Item Value
gene id pdx1
gene name pdx1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15480498 ~ 15485495 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622321.2
GTCAGCCGATGCGAGTAGGCTATTAGGCCTATACATCTGGTTATCGATTTCCCCCTCTATCAGTCGCCTATTGATAAGAGAACTAGGTTCATATAAATGTTCAATGGCTGACATTGTTCTACGGCAGTGAAATCTGCATTCAGGCTTCACGAGCGCACTGCATTCCCATCGTTTCTTCTTCTTTTCCATCAAGAGAGCCAAAGCCGTGATGATACTGACATTGTGGAGGCACTTTCTGTTTGCGTTTCTCTTCGTGCTTTTTCTATGCGGGCCGCAATCTCTCTGATTAGTTCGATGGCATTAGCCCCTGTCCGCTCGCAGCGATAGGACCCGCAGATTCCGCTGCTCACCTGTATATCGCTGCATTAGGACCAACTTGCGGCAGGTGGGTCTCAGATATCCGCCGTCAAACAGTGGAGTGTTTGCCGAGGGCATTGATTTGTGCACGGTCAATTCTGTTCAATTATTGTCGCTCCGCGGGGCAGAGAATACAGACACGAATAGAAACTAAGGTGACGACTTCTCAGTTTTGTGTAATCAGTGAAACCAATGGCTTAGGTGCAGCAGGGTCACGTGGTGGCGGTGACACACCTGCGCAGGGCCTATAGCGGAGACAGATGCACGAGCAGCACAGGTAGAGCAGAGCACAAGGTTCCACGCAGCAAAGGCAATAGGGCGCAtgtacatgtgcacacacacccGTTGGATAGCCTTGGCCCTCGGCAGTCATGAATCGAGAAGAGCACTACTATTCCCCCGCGCAGCTGTTCAAAGACCCCTGCCCCTACCAGAGACCCCACAGCGAGGACTTCAGCCACAGCCCTCCGCCCTGCCTCTACATGGGCCGGCAGGCTCAGTCCGTCTATTCCTCGCCTTCCATCGGAGGGCTAGACCAGGCAAGTCTCCCTGATATTGCTCCGTACAGTATGCCAATGCGAGAGGACCCAGGTGTGCCGCAGCTCCACCACCCCCAGGCGCCCCAGCAGACTATCCAACCGGGGGGTTACGGAGACCCGGGGGAGCTGGCTCTGTGTGCCGATAGGAACAGATACCACCTGCCTTTCCCCTGGATGAAAAGCACCAAGTCTCACGTGCAAACCTGGAAGGGACAGTGGGCAGGCCACTACATGGAGGCAGAGGAGAACAAGCGGACAAGGACTGCCTACACGCGAGCCCAGCTcctggagctggagaaggagTTCCTGTTCAACAAGTACATTAGCAGGCCGCGGCGTGTAGAGCTGGCCCTCACCCTCAGCCTCACAGAGAGACACATCAAGATCTGGTTCCAGAACCGACGGATGAAGTGGAAGAAGGAGGAGGACAAGAAAAGAGTGAGGGGGGTCGACCCCGAGCAGGACTCGTCCATTACGTCAGGGGACCTGAAGgatgaggctgggctgggggtcgGAGGGGCTGGGTTGGGGGTCGGGGGGGCAGGGGTGGGGGTCACGTTGGCAGGGGCTCCCACACCGGCACctctcaccactaccaccacacccCCCTCACCCCtacactcccactcccactcccactccctgtCAGGTTCGAGAGACTCGGCTTAG
>TU1081160
GCTTTTTCTATGCGGGCCGCAATCTCTCTGATTAGTTCGATGGCATTAGCCCCTGTCCGCTCGCAGCGATAGGACCCGCAGATTCCGCTGCTCACCTGTATATCGCTGCATTAGGACCAACTTGCGGCAGGTGGGTCTCAGATATCCGCCGTCAAACAGTGGAGTGTTTGCCGAGGGCATTGATTTGTGCACGGTCAATTCTGTTCAATTATTGTCGCTCCGCGGGGCAGAGAATACAGACACGAATAGAAACTAAGGTGACGACTTCTCAGTTTTGTGTAATCAGTGAAACCAATGGCTTAGGTGCAGCAGGGTCACGTGGTGGCGGTGACACACCTGCGCAGGGCCTATAGCGGAGACAGATGCACGAGCAGCACAGGTAGAGCAGAGCACAAGGTTCCACGCAGCAAAGGCAATAGGGCGCAtgtacatgtgcacacacacccGTTGGATAGCCTTGGCCCTCGGCAGTCATGAATCGAGAAGAGCACTACTATTCCCCCGCGCAGCTGTTCAAAGACCCCTGCCCCTACCAGAGACCCCACAGCGAGGACTTCAGCCACAGCCCTCCGCCCTGCCTCTACATGGGCCGGCAGGCTCAGTCCGTCTATTCCTCGCCTTCCATCGGAGGGCTAGACCAGGCAAGTCTCCCTGATATTGCTCCGTACAGTATGCCAATGCGAGAGGACCCAGGTGTGCCGCAGCTCCACCACCCCCAGGCGCCCCAGCAGACTATCCAACCGGGGGGTTACGGAGACCCGGGGGAGCTGGCTCTGTGTGCCGATAGGAACAGATACCACCTGCCTTTCCCCTGGATGAAAAGCACCAAGTCTCACGTGCAAACCTGGAAGGGACAGTGGGCAGGCCACTACATGGAGGCAGAGGAGAACAAGCGGACAAGGACTGCCTACACGCGAGCCCAGCTcctggagctggagaaggagTTCCTGTTCAACAAGTACATTAGCAGGCCGCGGCGTGTAGAGCTGGCCCTCACCCTCAGCCTCACAGAGAGACACATCAAGATCTGGTTCCAGAACCGACGGATGAAGTGGAAGAAGGAGGAGGACAAGAAAAGAGTGAGGGGGGTCGACCCCGAGCAGGACTCGTCCATTACGTCAGGGGACCTGAAGgatgagg
>TU1081161
GTTGGATAGCCTTGGCCCTCGGCAGTCATGAATCGAGAAGAGCACTACTATTCCCCCGCGCAGCTGTTCAAAGACCCCTGCCCCTACCAGAGACCCCACAGCGAGGACTTCAGCCACAGCCCTCCGCCCTGCCTCTACATGGGCCGGCAGGCTCAGTCCGTCTATTCCTCGCCTTCCATCGGAGGGCTAGACCAGGCAAGTCTCCCTGATATTGCTCCGTACAGTATGCCAATGCGAGAGGACCCAGGTGTGCCGCAGCTCCACCACCCCCAGGCGCCCCAGCAGACTATCCAACCGGGGGGTTACGGAGACCCGGGGGAGCTGGCTCTGTGTGCCGATAGGAACAGATACCACCTGCCTTTCCCCTGGATGAAAAGCACCAAGTCTCACGTGCAAACCTGGAAGGGACAGTGGGCAGGCCACTACATGGAGGCAGAGGAGAACAAGCGGACAAGGACTGCCTACACGCGAGCCCAGCTcctggagctggagaaggagTTCCTGTTCAACAAGTACATTAGCAGGCCGCGGCGTGTAGAGCTGGCCCTCACCCTCAGCCTCACAGAGAGACACATCAAGATCTGGTTCCAGAACCGACGGATGAAGTGGAAGAAGGAGGAGGACAAGAAAAGAGTGAGGGGGGTCGACCCCGAGCAGGACTCGTCCATTACGTCAGGGGACCTGAAGgatgagg

Function

symbol description
pdx1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within determination of left/right symmetry; endocrine pancreas development; and glucose homeostasis. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; endoderm; intestinal rod; liver primordium; and somite. Used to study diabetes mellitus and diabetic retinopathy. Human ortholog(s) of this gene implicated in cerebral infarction; hyperglycemia; maturity-onset diabetes of the young type 4; pancreatic agenesis; and type 2 diabetes mellitus. Orthologous to human PDX1 (pancreatic and duodenal homeobox 1).

NR:

description
pancreas/duodenum homeobox protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622321.2 False 1565 mRNA 0.57 2 15480498 15485495
TU1081160 False 1140 TUCP 0.57 2 15480668 15485240
TU1081161 True 694 TUCP 0.60 2 15480668 15484794

Neighbor

gene id symbol gene type direction distance location
pan3 pan3 coding downstream 24587 15439415 ~ 15455911 (-)
LOC110535333 LOC106590438 coding downstream 211841 15251271 ~ 15268657 (-)
LOC118937468 NA coding downstream 259468 15219006 ~ 15221030 (-)
LOC110535332 LOC106579536 coding downstream 397731 15080524 ~ 15082767 (-)
mtfr1 LOC106579534 coding downstream 582919 14884317 ~ 14897579 (-)
si:ch211-140b10.6 polr1d coding upstream 6342 15491837 ~ 15497193 (-)
rpl21 rpl21 coding upstream 40942 15526437 ~ 15530037 (-)
wasf3b LOC106579509 coding upstream 62183 15547678 ~ 15570639 (-)
cdk8 cdk8 coding upstream 85778 15571273 ~ 15589053 (-)
LOC110535353 LOC106579515 coding upstream 186332 15671827 ~ 15687069 (-)
G948150 LOC106579503 non-coding downstream 2401 15477361 ~ 15478097 (-)
G948149 NA non-coding downstream 23035 15456844 ~ 15457463 (-)
G948145 NA non-coding downstream 51875 15428382 ~ 15428623 (-)
G947941 NA non-coding downstream 71372 15408804 ~ 15409126 (-)
G947936 NA non-coding downstream 73299 15406985 ~ 15407199 (-)
G948163 NA non-coding upstream 1146 15486641 ~ 15486879 (-)
G948167 NA non-coding upstream 8849 15494344 ~ 15494625 (-)
G948168 NA non-coding upstream 11208 15496703 ~ 15496903 (-)
G948225 LOC106579514 non-coding upstream 133157 15618652 ~ 15625408 (-)
G948215 NA non-coding upstream 159573 15645068 ~ 15660357 (-)
G947894 LOC106579543 other downstream 114197 15365950 ~ 15366301 (-)
G947750 NA other downstream 270901 15206431 ~ 15209597 (-)
ly86 NA other downstream 1164812 14308595 ~ 14315733 (-)
LOC110535357 LOC106579444 other upstream 315280 15800721 ~ 15810494 (-)
LOC110536560 LOC106579448 other upstream 388834 15873634 ~ 15899014 (-)
drd3 LOC106579486 other upstream 504139 15988295 ~ 16040205 (-)
G949329 NA other upstream 564488 16049983 ~ 16050305 (-)
G949426 NA other upstream 808019 16293514 ~ 16294051 (-)

Expression

pdx1(pdx1) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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pdx1(pdx1) Expression in each Bioproject

Bar chart with 11 bars.
pdx1(pdx1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
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Co-expression Network