usp12a (usp12)


Basic Information

Item Value
gene id usp12a
gene name usp12
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15530175 ~ 15534688 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934991.1
TGACCAGTACATGTCAGTGAACTGCTGAACGACTCATCTGATTAACTTTTGTTaacaaaatgtattaaaataatgcAGATTTTGTTGTGCTTGTACATTATCGAAATAATTGATTGATGAACTGCTGACCGTGACAGATGGATCGCTCCCAGACATGACCCTCTAAGACCTAGCGGAGCTCCCATCGCCCGTCCAGTGTGCCCTGTCACAAGGGAGTCCTCCTCGCGGTGATTGGGTGGAAGATGGCGTTGGGCGAATGGAAATCCTAATGACAGTTTCCAAATTTGCCTCTTTTTGTACCATGGGCGCCAATGCCTCCGCTCTGGAGAAAGAGATTGGCTCAGAGCAGTTCCCTGTCAACGAGCACTACTTCGGATTGGTCAATTTTGGGAACACGTGCTACTGTAACTCGGTGCTGCAGGCGCTGTACTTCTGCCGTCCGTTCCGGGAGAAGATCTTGGCGTACCGCAGCCAGCCCCGACGCAAGGAGAACCTGCTGACCTGCCTGGCCGACCTGTTCCACAGTATCGCCAACCAGAAGAGAAAGGTGGGAGTCATACCACCCAAGAAGTTCATCACGCGCCTACGCAAGGAGAATGAGCTGTTTGACAACTACATGCAACAGGATGCCCATGAGTTCCTGAACTACCTGCTCAACACCATCGCTGACCTGctgcaggaggagaggaaacaggacAAGACCAACGGCCGCCTGGCCAATGGTTCGCTCGactcccagaacaacaacagcaACGCCCCGCCTCCCTCCACCTGGGTCCATGAGATCTTCCAGGGAACCCTCACCAACGAGACCCGCTGCCTCACCTGTGAAACGATCAGCAGCAAAGATGAAGACTTCCTGGACCTGTCAGTGGACGTGGAACAGAACACCTCTATCACACACTGTCTCAGGGGGTTTAGTAACACAGAGACTCTCTGCAGTGAGTATAAGTACTACTGTGAAGAATGTAGAAGTAAACAGGAGGCACACAAAAGGATGCGTGTGAAGAAGCTGCCTATGATCCTGGCTCTACACCTGAAGAGGTTCAAGTACATGGAGCAGCTGCAGCGTTACACCAAGCTGTCCTATCGTGTTGTCTTCCCCCTGGAGCTCCGCCTCTTCAACACCTCAGGAGACGCAACCAATCCCGAGAGGCTCTATGACCTGGTTGCCGTCGTGGTGCATTGTGGGAGTGGTCCAAACCGAGGACACTACATCGCCATTGTGAAGAGTCACGACTTTTGGCTGCTGTTTGATGATGACATTGTAGAGAAGATAGACGCCCAGGCCATAGAGGAGTTCTACGGCCTCACCTCTGAGATCTCAAAGAACTCTGAGTCAGGCTACATCCTATTCTATCAGTCAAGAGACTGACTGTCCCTGAAGAGGACAGTACCTCTCAGTGGATTTGAGGATCATACTAGTGGACCATACTAGTGTAAATCGCACTGTGGTGTCACACACCTACTGAAGCTCAGCCTCAGTCCCCCCctatcctccctccttcctccctccctcccccatcccactcctacctccctcccccttcctcctacctacctccctccttcccccaccCTGTCACTTAGGCTGGAGATGCTGCTACAGGGAGTTGTGTCAAAGGTTCGGTGGACGTTGTATCAAAGTTTTGTGAGTTGGAAAGCTGTTTAATGACGGTTGTACAGAGGTTGTGTGACTGAGGCGATGGTTATAGCATGGGGGTTTGTGTGGGGTGAGTGGGTATTTAATGATTCATGTGTTGTAATAGCGGCCAGGTGTCTGCATACTCCCTCAGACTGCAACTCTGCTTTGGTGCCTGGCTGGGGCCTAGTCAGAGCAGACCAGTTGACTGCATGAAGGGAGAGTGGGGAGGTGAGTGTTCCAAGTGTGGGACACTTGGGTCGTGTATTTCTACCATGTACAGAGTGGTATTTGTATCAATATGAGGAGAATAAGATTATATTATCATAGGAAAAAAATATAAGTCCTTGAGAAGATAATGTATTGTCACTATGGTGCACTTTTGATACCGTTTTGTAGGTGTTGGCAAGGTTTATGTGAGCGTTTGCTCAAGACGACCTGTTGTGAAATGGTCATTTTCTGTTTTAAAGAAAAATGTAATAAAAGATAATAGATACA
>XM_021620285.2
AATTACAGTCGTCATTCTCTACACAGCTGTGTGTCCAGAATTGCTCATGAGGGCACATTTGTGAATGTTATATTATCTACGCCACAGAACATGAACGTAGAACTTGCACGGAGCTAAAACGGTCACGGCTAGAAGGGATcgagcttttgtcaaattaacgtaaaagtagattttttttgtttttgttgcattTTAGCTAACTACATATTTTCCAAACCTTTACTGTATTCTCCTTAATCTGTTAATTTAACAAAAGATGGATCGCTCCCAGACATGACCCTCTAAGACCTAGCGGAGCTCCCATCGCCCGTCCAGTGTGCCCTGTCACAAGGGAGTCCTCCTCGCGGTGATTGGGTGGAAGATGGCGTTGGGCGAATGGAAATCCTAATGACAGTTTCCAAATTTGCCTCTTTTTGTACCATGGGCGCCAATGCCTCCGCTCTGGAGAAAGAGATTGGCTCAGAGCAGTTCCCTGTCAACGAGCACTACTTCGGATTGGTCAATTTTGGGAACACGTGCTACTGTAACTCGGTGCTGCAGGCGCTGTACTTCTGCCGTCCGTTCCGGGAGAAGATCTTGGCGTACCGCAGCCAGCCCCGACGCAAGGAGAACCTGCTGACCTGCCTGGCCGACCTGTTCCACAGTATCGCCAACCAGAAGAGAAAGGTGGGAGTCATACCACCCAAGAAGTTCATCACGCGCCTACGCAAGGAGAATGAGCTGTTTGACAACTACATGCAACAGGATGCCCATGAGTTCCTGAACTACCTGCTCAACACCATCGCTGACCTGctgcaggaggagaggaaacaggacAAGACCAACGGCCGCCTGGCCAATGGTTCGCTCGactcccagaacaacaacagcaACGCCCCGCCTCCCTCCACCTGGGTCCATGAGATCTTCCAGGGAACCCTCACCAACGAGACCCGCTGCCTCACCTGTGAAACGATCAGCAGCAAAGATGAAGACTTCCTGGACCTGTCAGTGGACGTGGAACAGAACACCTCTATCACACACTGTCTCAGGGGGTTTAGTAACACAGAGACTCTCTGCAGTGAGTATAAGTACTACTGTGAAGAATGTAGAAGTAAACAGGAGGCACACAAAAGGATGCGTGTGAAGAAGCTGCCTATGATCCTGGCTCTACACCTGAAGAGGTTCAAGTACATGGAGCAGCTGCAGCGTTACACCAAGCTGTCCTATCGTGTTGTCTTCCCCCTGGAGCTCCGCCTCTTCAACACCTCAGGAGACGCAACCAATCCCGAGAGGCTCTATGACCTGGTTGCCGTCGTGGTGCATTGTGGGAGTGGTCCAAACCGAGGACACTACATCGCCATTGTGAAGAGTCACGACTTTTGGCTGCTGTTTGATGATGACATTGTAGAGAAGATAGACGCCCAGGCCATAGAGGAGTTCTACGGCCTCACCTCTGAGATCTCAAAGAACTCTGAGTCAGGCTACATCCTATTCTATCAGTCAAGAGACTGACTGTCCCTGAAGAGGACAGTACCTCTCAGTGGATTTGAGGATCATACTAGTGGACCATACTAGTGTAAATCGCACTGTGGTGTCACACACCTACTGAAGCTCAGCCTCAGTCCCCCCctatcctccctccttcctccctccctcccccatcccactcctacctccctcccccttcctcctacctacctccctccttcccccaccCTGTCACTTAGGCTGGAGATGCTGCTACAGGGAGTTGTGTCAAAGGTTCGGTGGACGTTGTATCAAAGTTTTGTGAGTTGGAAAGCTGTTTAATGACGGTTGTACAGAGGTTGTGTGACTGAGGCGATGGTTATAGCATGGGGGTTTGTGTGGGGTGAGTGGGTATTTAATGATTCATGTGTTGTAATAGCGGCCAGGTGTCTGCATACTCCCTCAGACTGCAACTCTGCTTTGGTGCCTGGCTGGGGCCTAGTCAGAGCAGACCAGTTGACTGCATGAAGGGAGAGTGGGGAGGTGAGTGTTCCAAGTGTGGGACACTTGGGTCGTGTATTTCTACCATGTACAGAGTGGTATTTGTATCAATATGAGGAGAATAAGATTATATTATCATAGGAAAAAAATATAAGTCCTTGAGAAGATAATGTATTGTCACTATGGTGCACTTTTGATACCGTTTTGTAGGTGTTGGCAAGGTTTATGTGAGCGTTTGCTCAAGACGACCTGTTGTGAAATGGTCATTTTCTGTTTTAAAGAAAAATGTAATAAAAGATAATAGATACA

Function

symbol description
usp12 Enables cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Involved in protein deubiquitination. Predicted to be located in nucleoplasm. Predicted to be active in cytosol and nucleus.

NR:

description
ubiquitin carboxyl-terminal hydrolase 12

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG:

id description
K11842 USP12_46; ubiquitin carboxyl-terminal hydrolase 12/46

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934991.1 False 2140 mRNA 0.50 10 15530175 15534688
XM_021620285.2 True 2259 mRNA 0.49 9 15530394 15534688

Neighbor

gene id symbol gene type direction distance location
lnx2a lnx2 coding upstream 12014 15497461 ~ 15518161 (+)
urad urad coding upstream 50307 15478585 ~ 15479868 (+)
LOC110535338 LOC106579503 coding upstream 51953 15375660 ~ 15478222 (+)
LOC110536557 LOC106579543 coding upstream 162632 15342361 ~ 15367543 (+)
tmprss7 tmprss7 coding upstream 192985 15320582 ~ 15337190 (+)
LOC110535348 LOC106579510 coding downstream 4990 15539678 ~ 15547074 (+)
rnf6 LOC106579512 coding downstream 52596 15587284 ~ 15593900 (+)
atp8a2 LOC106579514 coding downstream 59728 15594416 ~ 15660363 (+)
spice1 spice1 coding downstream 153572 15688260 ~ 15695114 (+)
boc LOC106579445 coding downstream 212462 15747150 ~ 15800515 (+)
G948005 rpl21 non-coding upstream 233 15526437 ~ 15529942 (+)
G948000 NA non-coding upstream 9497 15520464 ~ 15520678 (+)
G947999 NA non-coding upstream 11461 15518492 ~ 15518714 (+)
G947980 NA non-coding upstream 38545 15491107 ~ 15491630 (+)
G947984 NA non-coding upstream 39664 15490288 ~ 15490511 (+)
G948011 NA non-coding downstream 3477 15538165 ~ 15538443 (+)
G948049 LOC106579518 non-coding downstream 160502 15695190 ~ 15699638 (+)
G948092 NA non-coding downstream 194002 15728690 ~ 15728894 (+)
G948115 NA non-coding downstream 244297 15778985 ~ 15781343 (+)
spata13 LOC106579541 other upstream 230802 15285042 ~ 15320246 (+)
G947301 LOC106590396 other upstream 642893 14886614 ~ 14887282 (+)
LOC110535322 LOC106579526 other upstream 860419 14665667 ~ 14715423 (+)
G946999 NA other upstream 946126 14582543 ~ 14584049 (+)
G948524 NA other downstream 519377 16054065 ~ 16054638 (+)
sh3kbp1 LOC106579452 other downstream 538728 16073315 ~ 16098499 (+)

Expression


Co-expression Network