LOC110535348 (LOC106579510)


Basic Information

Item Value
gene id LOC110535348
gene name LOC106579510
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15539678 ~ 15547074 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620287.2
CTGGCCCGTTAGAGAGCAGCGCTCCCCCTTTTCCACACCCCCGCTCGCTGCACAGCCGCAGTCCACAGCAATGCTCCTGTAAAGCCTCTGCTCCGCTTTCCCTGCTCTCCCTCTGTGCTTCAGTAAAGACCCATCCACCCCCTGGTGCAACAGTGCTGCATCTTCATCTGATCCGGGCTCCGCACCTGCCGCCATCGttatcaatagcctataatggaAATACAGCAAGGACGCACTTTTATCTAGCCTTACGCCGCACCACGGAGTCAAGCATCTACGGGTTGTGGCGAAGAAGAGGCTATCTGGACCATTTCCTCTTGTGGTGGGACGGGGGGCACAATGAGTGACGCATACAAGGCGTTGGTCACCCCCAGctggctgacccctgaccccacaGCCTGGTCCAGCAGCGGAGACGGATTCACGGACAACGCCACCTACTCCCCTCTGGACTCCTTTCCCCCAGTGCCCCCTCTCCTGGTCAACCCCTGGGACATCTTGCTGTGCTCCTCAGGGACTCTCATCGCCTGTGAGAACGCCCTGGTGGTACTGGTGATCTGGCAGAACCCGTCTCTCCGAGCCCCCATGTTCCTGCTGATCGGCAGCCTGGCCCTGGCTGACCTCCTGGCTGGTCTGGGCCTGGTGCTCCACTTCACCTTGGCCTACCTGCTGAGGTCTGACTCGGCCCAGTTGCTGACTGTTGGTCTGGTGGTGGCCTCCTTCTCAGCCTCCGTCTTCAGCCTGCTGGCCATCACCATAGACCGTTACCTGTCACTCTACTACGCCCTGACCTACAACTCAGAGCGCACTGCCGCCTTCACCTACACCATGCTGGTTCTCCTCTggggcctgtctctctgtctgggcctACTTCCCGTCACGGGGGTGAACTGCCTGGCGGAGGAGTCGACATGCAGCGTGGTGCGGCCGCTGACTAAGAACAACGTGGTGGTGCTATCCGTATCCTTCCTCCTGCTGTTCGGCCTCATGCTGCAGCTGTACGTACAGATCTGTAAGATCGTCATGCACCACGCCCACCAGATCGCCTTGCAGCATCACTTCCTGTCCACCTCGCCCCACTACGTCACCACCAGGAAGGGCGTCTCCACACTGGCCATCATCCTGGGGACGTTTGCCGCCTGCTGGATGCCCTTCACCGTCTACTCCCTCGTCGCCGACTACACGTACCCACCTCTCTACACCTACGCCACCCTGGTGCCCGCCACCTACAACTCAGTCATCAACCCAGTGATCTATGCCTTCAGGAACCAGGAGATCCAGCAGGCTCTGTGGCTGGTGTGTTGTGGCTGTATACCGGCCAGGGTGACCCACAGGGCACGGACCCCCAGCCACGTCTGACACAGACCCAGGccctgggagggaaggagagaggtgccctgggcagaggaaggcaggcaggcagggctcATGCTGGGTCTACTGCATGGCTCTGTGTCTCCATGGCTGGGCTGTATCCAGTGAAGGATggaggcagcagcaggagaaggggaggtggagggataaGTAGAGgcagatacatacagtatatatcttTGAGTATAGGGTGGAGGATTTGGTACAAAAGTGTACTGTATGCCTACTGTACTACTGTCCGACCTTCTCTATCTTCCGTCTTCCCCGTTTAAATATAAAACAACATCACATGATCTGACCGTTGCCACCATAGGTGTACCATCCCCCCTCCACACCACCGTTGGGTTTACGTGCCACGAGGTGTTCTGCAGATGACTGGGAAAGGATGGCCGCATGGCGCTGCAGCAAATGTAGATTACATAGTTTTAGCCGCTTTTAATGATGCGCGCTTTTTTCCCTCCATAAAAGGATTGAGAGATTATTCTAGACTGTTTAAACTTGTCCCACAAGTTAAAAAGATCGTGTGTGTGCAAAAAGGCAATGCATGTGTCCcatggacagagagggagagcgagaggagtaGTGGAGGGAGTGATGAGCAAAAGGGGGCGATGATCAAGATGCAGACGGTTCCCTACAACGAAGCCGGGCTGCGGCTAGAGCATCTCATCTCGCTGCTGCACTCTGAACGTGCTTTGAAAGCTAAACAACCGCGAGAGGCTAAAAATAGCCCCGGCGCTCTGTGATCCGCGCGCCCTGCGTCCTCCGCAGACACCGAGTAAAGAAACCAAgccgaggaggaggagagcgggCGCTTATCTTCCCTCCCATCCATCTTTcaatctccatctctccccatttCACGTGTGAGAATGTATTATGATGTTCTGTTTGCTCTACATCCCGAGGTGACAACAGCCTCCAGAAGATAAGTACCCTTATTGCCCTACCCCTTGCGCGTGCCAAATGCCCTTAGATTATGATAAGACCTATGGGTTTGATCTTTTTATCTCCGTTTTATCCAGTCGCTTCTTCATACATAAACAGCTCAATTCTCATAACTAACTCATTCTGTATTTTACGCACGTTAAGTAGGCTGACTTCTCTTGAAAGTAGAGGAGAGTGAAATGTTCCCTCTGCAGACCAAGCAGACAGTTAGACCGGCTGGGAGCTGTTGAAACTGAACGTATTGTGGGATCCTCGCTATATGAGCCAAGTTACAATTACCACCAAGCATGTTAACCATATTGGCACTATGTGTGGGGTGTTTGCGTTTTATGCCAGATACCCGGGTTTGCTTCCAGTTCCTCTTTTTGCTACATTGttgtcagaagtgggatggcgGCCTTGAGGCCAGCGGACTACACAGCCCGAGGTGTATGAAGCATAGGACTTTAAATGAATACCATTTCCCCTGATATTGCAACCAGGTCTAAGACCATTGTGTATTATTCTATATGTAAATCCAAGATACTCCAttttgtgtgatatgttatgtttggttacataagacagcCTTAACTCAAAGACTGCAAGTTTGATATCATCACTGACACCTTCAGCATTTtatctaattagcaacttttcaactacttactactttttagctaatttccaactacttagcatgttagctaacccatcacctaatcctaaccatagcccttttagttaaccctaaccttaaccctttaacctaactccttaACTTGACCTTAACCACTAGCCTAGCTAGAATTAGgaacatatcatacatttagcaaatttgtgacatattgtacatttgcaacttcgtaacatataatacgaaatggggatggacatccacaaagtAATAGAGTGTTGATTATCAATCATCTATGTGACAGACCATGGTACAATAAgtgtatttattttaaatgttttaatcttTGGATAACAAGAAAGGAGTAGAGCAGTGACACGTCTTGTTCTTCCAGCTATGGATGTCTCCTGCCTCCTGGATCCACTTCCTTACCGTGGCTGACAGAAGCCAGTCAACACCACCCCCTGATTTAGAGCGGTTGGGTTAAATACAGAAGACACCTTTCGGTTTAAGGAATTCAGACTAGGTATCACCTTTCCTTGATCATAGCCAGCGGTGTGGACGTCATGCTTGCTGCTTGCCTAGCGAGTACCAACAACTTCCTTCTGATTCAGCTCATAATGAggcttgaacccaggacctctgccttgctagcacacgtgACCACCCTCCTTGATAACCGTTTGAGCTATCGGAAAATATCTAAGCCGATAGCTGCGGAGTGAGCTGACGGGTACATCCTTAATACATTCACCCCTTCTAAACTCGCTTCATAGCTAACAACCCGGCCTTGGAGCTGAGCCCAACTGCGGATCACGGCACCACTGTTATGGACGTTGCGCTGCTTGCCTAGCAAGTACCACTTCCTCCTGATTCGGCTCACACCGAGGCGCAAACCCAAGACTTCTGCTTTGCTAGCACACATGACCGCCGCCGTCTTTGACAACATGCCAGCCATTTGAGCTATCGGAATATATCTAATTCGATAGCACCATCAGCGACATGTCAAGCTAGCTGTGGAGTGATCTTATGGTTGTTCTTAATGCTGTTACAGCATCGCCCTTCACACATTGCTTGTTGATGAGGGTCAATCGGCCCTAGGTCCTCATTCTGCCCTGTCATATCAGCCAGCAGCAACAACTAAGTGTTAGTTACTTCATGGACCGATAGCAATACTCTGTCAGCAATAAGCAATGATGTGTATAAGCCCTGGATGACTAACAGGAGGCGTTGTATTGAAGCCACCGCGCAGTCATCTTGGTACTCCCCCTCCAGTGTAAAAAATATTTAGGAAGacatagaaatgcatttattaatgtctacattagtGTCTGATAagtttattatattacagacaccttcGTGCATAATTTAAaatatgtgagctaaacataaaatatttaaaaatacagTCCCCTCTACGACAAAACAAATACTTAAATGattgtaattttgtccttgaaacatgtAATTGAAAGAATTCTGTAGAATTCCAGTCATTTCTATGGAGGACTGCTGCTACTGGGGAgggccaatatggccgaccggtggcttcaaagcctctcaatggccaatacatagcatctgcaatccagggtttataaaCATCATTGGCAATAACAGCCTCTTCCCAGCAGCATGACCCCCTCCAGCATGATGATATACAAGGACAACAGCCCTTATCTACGATGCCAAGCAGAGTCCTTATACGACCAGGCCGAAAAGGACTCTGAACTTCCCCAATACTTGTGCCGTGTGTGATTTCTCCAAATGGGAAATTAGATCTTGActtgtgtgttttgtttttgaaaatgtgaatGGGACAGGATACTGACTGCCACCGTCCAGTATTCTGTCATTACTCATTACAATGTCACTGCCTCCTTTGATCTGAATCTACTGCTGTATTCTCTGGCTACGGTCGTCTTCAATATCTTACATTGAATGAAACCCGGACTCTGTGAGAAAATATCTCACCGGTTTTCAGTTGCATCTGCCTTTGTGAACATATTAAGCGTCTGTGATTAAGGAAAATCTTTCTGTGCATATGAGTTGCATGGCCTCTGAGTGTGTGCATTTGAGtatgatgtatgtgtgtgtgtgtgtgtgtgtgtgtttgtgatcagaagcacagacctactgtatagcTGTCTCCATGGGGACAGTAGATCTGAGGATTTACTTTCTGCGTGACCCTTTCACCTCAGGGGAAATGGCTGCCAGTCTTCCCATCATTCTGAGAGAAGTGGCCTCATCACACAAATTCCACCAGAGGAATGACGAAGAGAAGGATAGTTCCTGATGTGTTGAACTGAATAGTGGAGGTATGCAGCGGCTGACCCTGAGCAGTAGTGTGGGGGCTAAGGCAATGACGTCACGTGACTGATGGAATAAGAGCTCCTGTCATAGAGCCAGGTATCACAAGTTCTTGTGGCTCTTCACAGACCAACAAAGCCAAGAAGACATGTCCTTTACCTTTGATGAATAATCTATTTTGTTATATTTGGTGAAAGTTTCTATATTTTTTTCTAGCGTTGACACGCCCGAATTCTGATTTATCTAAAGTATCTTGTATTTTAATGCGCTGTAGAGCCTCTTCTGAATGTATTGGTAAATATACATTGTTTATTTAATGTGGCAGCCTGTTGACCAATTAGATTCTGTAGATATAGCATGCGTATCTTTTTATAGGGGTGTTATGACATCACGTATGGTGCTACCTACACCAGGGTCCAAGGGGGGCTCAGGTGCACCAATTTTGAGTGACATCACATTTCACTCCCAATTACGGTTTTCTAAAGCCTGTTTACATTTCAATCCCTAGCCCCTTCCCCCAATCCCTCACCCTTCTTTAGGCAGATCTGCAAAGTCTGGAGAGGTGAAAGCAGTATGGCTTACACTTTACTTAGCCTGTTGGAGGGCTAGGTGGAGCTGTCACAGTACTTTCACCTATCAAAAATCTTGAGGATGTGCCGGACCAATGAGCTAAGGGCTAGGGACAGAAATGAAACCGTGCTTcccttattttttttaatgttctcTCATGTACAGTAATGTCAATCGTTCAAGGCTCTAAGTGAGCTTTCGTAGTTGGGATAGGTGCAAACAAGGGCTTCACATTCTTGAGTAGACAAAGGAAGCACTGGTGTGTGGATATGGTACTTTACTGTTTGGATAGCATATTTACTTAATGTTCAAGTATTGTGCAGTGTAATCGCACAGAAAAGTGTCATTTTGATTGTACAGAGGAATTAACTTTCATGTGGTTGGAGGAGTTTCTAGTGTTACCGGTGGGGTTTCAAGAGTTGTAGGTGAATTATGTGGTTTGGTACCCCGATCCAGAGCTAAATTACAAGTCTTTTAACTCCTCAATGGCTGAGAATGGGGAGGGATGCTACAGTAACAGCATCTTGTGTAGACTCATGCGTTGTTTTAAATGTGAAATGCACTTTATGTTGTTGGACAAAAAAATGGCACAACAAATTAAGTATCTGCAAAATGAAAACTATAAATGATAATCAACATGCACTAACTGAGATATTGTAAGACGTGTGAACGTGGTGTGTATTTTTTCAAGGTGTTAGATGTAATTTTTTGTTGCTTTGGTTAGTTTACCGAATTGAGAGATGTTGTTAATTTTGTATTAAAAGAATGTGCTGTGCATTAAAAACA

Function

NR:

description
G-protein coupled receptor 12-like

GO: NA

KEGG:

id description
K04315 GPR12; G protein-coupled receptor 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620287.2 True 6610 mRNA 0.47 3 15539678 15547074

Neighbor

gene id symbol gene type direction distance location
usp12a usp12 coding upstream 4990 15530175 ~ 15534688 (+)
lnx2a lnx2 coding upstream 21517 15497461 ~ 15518161 (+)
urad urad coding upstream 59810 15478585 ~ 15479868 (+)
LOC110535338 LOC106579503 coding upstream 61456 15375660 ~ 15478222 (+)
LOC110536557 LOC106579543 coding upstream 172135 15342361 ~ 15367543 (+)
rnf6 LOC106579512 coding downstream 40210 15587284 ~ 15593900 (+)
atp8a2 LOC106579514 coding downstream 47342 15594416 ~ 15660363 (+)
spice1 spice1 coding downstream 141186 15688260 ~ 15695114 (+)
boc LOC106579445 coding downstream 200076 15747150 ~ 15800515 (+)
atp6v1ab LOC106579446 coding downstream 270301 15817375 ~ 15839784 (+)
G948011 NA non-coding upstream 1235 15538165 ~ 15538443 (+)
G948005 rpl21 non-coding upstream 9736 15526437 ~ 15529942 (+)
G948000 NA non-coding upstream 19000 15520464 ~ 15520678 (+)
G947999 NA non-coding upstream 20964 15518492 ~ 15518714 (+)
G947980 NA non-coding upstream 48048 15491107 ~ 15491630 (+)
G948049 LOC106579518 non-coding downstream 148116 15695190 ~ 15699638 (+)
G948092 NA non-coding downstream 181616 15728690 ~ 15728894 (+)
G948115 NA non-coding downstream 231911 15778985 ~ 15781343 (+)
G948116 NA non-coding downstream 232559 15779633 ~ 15780297 (+)
spata13 LOC106579541 other upstream 240305 15285042 ~ 15320246 (+)
G947301 LOC106590396 other upstream 652396 14886614 ~ 14887282 (+)
LOC110535322 LOC106579526 other upstream 869922 14665667 ~ 14715423 (+)
G946999 NA other upstream 955629 14582543 ~ 14584049 (+)
G948524 NA other downstream 506991 16054065 ~ 16054638 (+)
sh3kbp1 LOC106579452 other downstream 526342 16073315 ~ 16098499 (+)

Expression


Co-expression Network