Item | Value |
---|---|
gene id | rnf6 |
gene name | LOC106579512 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048575.1 |
NCBI id | CM023229.2 |
chromosome length | 86280908 |
location | 15587284 ~ 15593900 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
E3 ubiquitin-protein ligase RNF6-like |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036934995.1 | False | 4413 | mRNA | 0.52 | 4 | 15587284 | 15593900 |
XM_036934994.1 | False | 4457 | mRNA | 0.53 | 4 | 15587291 | 15593900 |
XM_036934998.1 | False | 4299 | mRNA | 0.53 | 4 | 15587682 | 15593900 |
XM_021620293.2 | False | 4320 | mRNA | 0.53 | 4 | 15587712 | 15593900 |
XM_036934997.1 | False | 4347 | mRNA | 0.53 | 4 | 15587915 | 15593900 |
XM_036934996.1 | False | 4802 | mRNA | 0.52 | 4 | 15588127 | 15593900 |
TU1080953 | True | 305 | TUCP | 0.60 | 3 | 15587830 | 15589776 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110535348 | LOC106579510 | coding | upstream | 40210 | 15539678 ~ 15547074 (+) |
usp12a | usp12 | coding | upstream | 52596 | 15530175 ~ 15534688 (+) |
lnx2a | lnx2 | coding | upstream | 69123 | 15497461 ~ 15518161 (+) |
urad | urad | coding | upstream | 107416 | 15478585 ~ 15479868 (+) |
LOC110535338 | LOC106579503 | coding | upstream | 109062 | 15375660 ~ 15478222 (+) |
atp8a2 | LOC106579514 | coding | downstream | 516 | 15594416 ~ 15660363 (+) |
spice1 | spice1 | coding | downstream | 94360 | 15688260 ~ 15695114 (+) |
boc | LOC106579445 | coding | downstream | 153250 | 15747150 ~ 15800515 (+) |
atp6v1ab | LOC106579446 | coding | downstream | 223475 | 15817375 ~ 15839784 (+) |
gramd1c | LOC106579449 | coding | downstream | 247948 | 15841848 ~ 15857765 (+) |
G948011 | NA | non-coding | upstream | 48841 | 15538165 ~ 15538443 (+) |
G948005 | rpl21 | non-coding | upstream | 57342 | 15526437 ~ 15529942 (+) |
G948000 | NA | non-coding | upstream | 66606 | 15520464 ~ 15520678 (+) |
G947999 | NA | non-coding | upstream | 68570 | 15518492 ~ 15518714 (+) |
G947980 | NA | non-coding | upstream | 95654 | 15491107 ~ 15491630 (+) |
G948049 | LOC106579518 | non-coding | downstream | 101290 | 15695190 ~ 15699638 (+) |
G948092 | NA | non-coding | downstream | 134790 | 15728690 ~ 15728894 (+) |
G948115 | NA | non-coding | downstream | 185085 | 15778985 ~ 15781343 (+) |
G948116 | NA | non-coding | downstream | 185733 | 15779633 ~ 15780297 (+) |
spata13 | LOC106579541 | other | upstream | 287911 | 15285042 ~ 15320246 (+) |
G947301 | LOC106590396 | other | upstream | 700002 | 14886614 ~ 14887282 (+) |
LOC110535322 | LOC106579526 | other | upstream | 917528 | 14665667 ~ 14715423 (+) |
G946999 | NA | other | upstream | 1003235 | 14582543 ~ 14584049 (+) |
G948524 | NA | other | downstream | 460165 | 16054065 ~ 16054638 (+) |
sh3kbp1 | LOC106579452 | other | downstream | 479516 | 16073315 ~ 16098499 (+) |
ccl20b | LOC100135878 | other | downstream | 616029 | 16209929 ~ 16211192 (+) |