Item | Value |
---|---|
gene id | atp8a2 |
gene name | LOC106579514 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048575.1 |
NCBI id | CM023229.2 |
chromosome length | 86280908 |
location | 15594416 ~ 15660363 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
unnamed protein product |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036935005.1 | False | 3919 | mRNA | 0.54 | 37 | 15594416 | 15658441 |
XM_036935001.1 | False | 4255 | mRNA | 0.54 | 37 | 15594416 | 15658937 |
XM_036935002.1 | False | 4222 | mRNA | 0.54 | 37 | 15594416 | 15658937 |
XM_036935003.1 | False | 4141 | mRNA | 0.54 | 36 | 15594416 | 15658937 |
XM_036935004.1 | False | 4108 | mRNA | 0.54 | 36 | 15594416 | 15658937 |
XM_036935006.1 | False | 4187 | mRNA | 0.54 | 38 | 15594596 | 15658936 |
XM_036935007.1 | False | 4154 | mRNA | 0.54 | 38 | 15594596 | 15658936 |
XM_036935008.1 | False | 4553 | mRNA | 0.53 | 36 | 15605884 | 15658935 |
XM_036935009.1 | False | 4520 | mRNA | 0.53 | 36 | 15605884 | 15658935 |
TU1080943 | False | 1402 | TUCP | 0.51 | 5 | 15651974 | 15659462 |
TU1080938 | False | 1317 | lncRNA | 0.45 | 2 | 15659011 | 15660363 |
TU1080942 | False | 1319 | lncRNA | 0.45 | 2 | 15659011 | 15660363 |
TU1080944 | False | 1313 | lncRNA | 0.45 | 2 | 15659011 | 15660363 |
TU1080945 | False | 1329 | lncRNA | 0.44 | 2 | 15659011 | 15660363 |
TU1080946 | False | 1325 | lncRNA | 0.45 | 2 | 15659011 | 15660363 |
TU1080947 | True | 1282 | lncRNA | 0.44 | 3 | 15659011 | 15660363 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
rnf6 | LOC106579512 | coding | upstream | 516 | 15587284 ~ 15593900 (+) |
LOC110535348 | LOC106579510 | coding | upstream | 47342 | 15539678 ~ 15547074 (+) |
usp12a | usp12 | coding | upstream | 59728 | 15530175 ~ 15534688 (+) |
lnx2a | lnx2 | coding | upstream | 76255 | 15497461 ~ 15518161 (+) |
urad | urad | coding | upstream | 114548 | 15478585 ~ 15479868 (+) |
spice1 | spice1 | coding | downstream | 29323 | 15688260 ~ 15695114 (+) |
boc | LOC106579445 | coding | downstream | 88213 | 15747150 ~ 15800515 (+) |
atp6v1ab | LOC106579446 | coding | downstream | 158438 | 15817375 ~ 15839784 (+) |
gramd1c | LOC106579449 | coding | downstream | 182911 | 15841848 ~ 15857765 (+) |
zdhhc23b | zdhhc23 | coding | downstream | 199582 | 15858519 ~ 15865400 (+) |
G948011 | NA | non-coding | upstream | 55973 | 15538165 ~ 15538443 (+) |
G948005 | rpl21 | non-coding | upstream | 64474 | 15526437 ~ 15529942 (+) |
G948000 | NA | non-coding | upstream | 73738 | 15520464 ~ 15520678 (+) |
G947999 | NA | non-coding | upstream | 75702 | 15518492 ~ 15518714 (+) |
G947980 | NA | non-coding | upstream | 102786 | 15491107 ~ 15491630 (+) |
atp8a2 | LOC106579514 | non-coding | downstream | 74 | 15594416 ~ 15660363 (+) |
G948049 | LOC106579518 | non-coding | downstream | 36253 | 15695190 ~ 15699638 (+) |
G948092 | NA | non-coding | downstream | 69753 | 15728690 ~ 15728894 (+) |
G948115 | NA | non-coding | downstream | 120048 | 15778985 ~ 15781343 (+) |
G948116 | NA | non-coding | downstream | 120696 | 15779633 ~ 15780297 (+) |
LOC110535338 | LOC106579503 | other | upstream | 154554 | 15375660 ~ 15478222 (+) |
spata13 | LOC106579541 | other | upstream | 295043 | 15285042 ~ 15320246 (+) |
G947301 | LOC106590396 | other | upstream | 707134 | 14886614 ~ 14887282 (+) |
LOC110535322 | LOC106579526 | other | upstream | 924660 | 14665667 ~ 14715423 (+) |
G948524 | NA | other | downstream | 395128 | 16054065 ~ 16054638 (+) |
sh3kbp1 | LOC106579452 | other | downstream | 414479 | 16073315 ~ 16098499 (+) |
ccl20b | LOC100135878 | other | downstream | 550992 | 16209929 ~ 16211192 (+) |
G948587 | NA | other | downstream | 664413 | 16323350 ~ 16326407 (+) |
G948318 | NA | non-coding | downstream | 166935 | 15827298 ~ 15828220 (+) |