boc (LOC106579445)


Basic Information

Item Value
gene id boc
gene name LOC106579445
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15747150 ~ 15800515 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935014.1
CATGAGTTGAAACAACACTTTATCATCGCGCACGGCGGTAAGATCCACGGTGCGGTGAAACTAGAGTGTTTCTTGGGGGAAACTAGACGGCTTTACCAAACGTTGGGATTTAGGAGCGAGTCCCTATTGTTCAAATCCCTCCCCCTTCTTGGGAAGTGGGAGGACCCGAAAAGGCGTTGCAAAAGAGAGAATTGTTTGCAAGCTCAGTCATCCAAAAACGGCCTTTCAATGTGAGAACTTGGGGAGCCGAAGAAAATGTCGGTGGCATCGCAGTAAATTACTAAAGCAGTAGCTTTAGAGGGAAAAGAAAAAGTGAAAAGTGTTTTTTCCCTGAAAATTTACTGAAGTAAAAAGCGGAGAAGGAGATCAAGTGGTGTCGTGAGGAGTGAATTCCAAATAAAGCACGTTTTGgggGTAGTGTATGGAAGATGTCTGGAACAGACTGGACTCCGTGGATGAAAAAGCGACGGGTGCGAGTGCTGTGTGCTCTGGGTGCTGTGCTACTGTGCTGCCTACAGGGCGGCGCCACTGTCACTGATGAAGTGCCAGTGTTCACAGAGGAGCCTCTGTCGGTGGTGCAGAAGTTAGGTGGTAGCGTGACCCTGAGATGCAGCGCCCGACCCCCCTCGGCCAACATCAGCTGGCGGCTGAACGGGCGTGAGCTGGTTGCCGGGGCTGGTGGGGAACTGGGGGTGGTACTGGAGCCTGGCACGCTGCTCATCCCAGCCCTCACCAACCTCACCCTGGGCAGGTACCAGTGTGTGGCCAGCACCAATGCAGGGGGACTGGCCAGTGTGCCAGCCAACGTCACCGCTGCCAAGCTGCGAGACTTTGAGCAAGACAACCAGCAGGACATTGAGGTGGACGAGGGGAACACGGCTGTGATCCAGTGTCACCTCCCTGAGAGCCAGCCCAAGGCACAGGTTCGCTACAGTGTCAAACAGGAGTGGCTCGAGACCTCCAAAGGGAACTACCTGATCATGCCTTCAGGGAACCTGCAGATAGCCAACGCCACTCTGGACGACGAGGGGCCCTACAAGTGTGCTGCTTACAACCCTGTCACACAAGAGGTCAAGACCTCCACCTCCACTGACCGCCTGCGCATACGCCgttcGACGTCGGAGGCGGCCCGTATCATCTACCCCCCAGTGTCTCGCACCATCATGGTCACTAAGGGACAGCGTCTGGTCCTGGAGTGTGTGGCCAGCGGCATCCCGACCCCGCAGGTTACATGGGCCAAGGACGGTCAGGACCTGCGTTTCCATAACAACACGCGCTTCCTGCTCAGCAACCTGCTGATCGACGCAGCGGGCGAGGGCGACTCAGGGACGTACAAGTGTCACGCTGACAACGGCATCGGATCAGAGAGCGCCGCTACTGTGCTCTACAACGTGCAGGTGTTCGAGCCTCCCCAAGTAACCATGGAGCTCCAGCAGCAGGAGGTGTCGTGGGGGGAGAGTGTGCGCTTCAGCTGCCTGGCCAGGGGTAAACCCACCCCCTCTGTGGTATGGCTCCACAACGCCCGCCCCCTGGCCTCGTCACCACGCCACCGCCTGTCTGCCCGCGTGCTGCGTGTCATCAACGTGGGCCCGCAGGACAACGGCTTGTACCAGTGCATGGCTGAGAATGGTGTGGGTAGCTCGCAGGCTGCCGCCAGGCTGGTCACCTTACCAACCGGTGTTCCGTCTCGGCCAGGGAAGCTGCCCTCCATCCTGCGTCCACTGAGCCCAGACAAGGTGCTGCGGGAGCAGGTCCCAGTGAAGCCCGGGGCCACGGGTAGCGTGCTGACCCTGGACTGCTCTGAGCTGACTGGGCAGATCTCTGTGGCAGAGGCCCCTGTCATCCTCAGCCAGCCCAGGACCGTCAAGGCTGACTTCTATGATCTGACCTGGAAACCTCGCCACGATGGAGGCTCTCCTGTGATGGAGTACATCGTCAAGTACAGAAAGatagaggaCCCTCCAGGTGAGTGGACCAGCAGCAGTATCTCTGGGTTTCTCCACAAGCTGACCCTGGCCAAGCTGCAGCCAGCCAGTCTGTACGAGGTAGAGATGTCTGCTAAGAACTGTGCTGGCCTGGGACAACCCGCCATGATGACcttcaggacaggcaaagGTCGTAGGGGTCCAGGAGGTCAGAACGAGCTCCCTAAAACTCCTCCAGTACCATCACCTCGCCTCTCTCCTCCTGAGGCCCCTGATAAGCCCACCATCTCCATGGCGACTGAGACATCTGCGTACGTGACATGGATCCCCCGCGGTAACCGTGGTTTCCCCATCCAGTCTTTCAGAGTGGAGTTTAAGAAGCTGAAGGGGAAGGGAGGTGGGGAGTGGGAGGAGGCCGTCACTAACATCCCCCCCCAGCGACTGTCTGTGGAGATCACTGGCCTGGAGAAAGGCATGTCCTATAAGTTCCGTGTGTTGGCGGTAAATGTGATTGGCGCCAGCCCCCCCAGTGCCCCCTCTAAGGCCTACACGGTGGTGGGGGGTGGCAGGCCCAACGAACGCCCTGTAGACGGACCCTACATCACTTATAATGAAGCTATCAACGAGACCACCATCATCCTAAAATGGACGTACACTGCCGTCAACAACACCCCTGTCTACGGTTTCTACATCTTCTACCGGCCGACAGACAGTGACAACGACAGTGACTATAAGAAGGACGTGGTGGAGGGTGACCGTTACTGGCACTCTATCACTGACCTGCAGCCTGAGACGGCCTACGACATCAAGATGCAGAGCTTcaacgaggggggagagagcgagttTGGCAACGTGGTTATCTTAGAAACTAAAGcTCGACTGAACCAGCGGCCCTCTCCATCGGAGGCGTCATCCCAGAGACCAGAGCACCCCGGGGGGCCTGTGCCCCGCCCCAGCGACCTCCCCTACCTCATAGTGGGTGTGGTCCTGGGGGCCCTCGTCTTCATCATTGTAGCCTTCATCCCCTTCTGCCTGTGGAGAGCCTGGGCCAAACAGAagCAAACATCAGACCTGTGTTTCCCAGCCGTGGCACACCCTGTCTCCTCATGCCAGTATACCATGGTGCCTCTGCAGGGCCTGGCTCTGGTTGGCCACTGCCCGCTGGACCCCCATTTGCCCCCACCGCATGCCATCTACCCCCCTAACAGAGAGTGCACGCCCAATGGGAAACACCATTACCCCACACACCGTCTGCCAGGACTACGCCAGGAGGATGTGGAGTATGATATGGAGTGTGACACGCTGCTAGCACAGACCATGTCAAATGGACACGCCCCAGGCTACCACTACTCTAACAGtgagCCTGGAGACGGTGAGGACTGCTGTCTGCCCGATGACTCCACCCTCCAGCTCCTCAACACCTCTGAACAGCCAATCAGCACTCAGGAGCTGACGGGCAATGCCCATTTTCACAATGGGGACATCAATCTAGaccttctaccctgctctccctctcctctgctatCACTGGAGGAGAACTCCACGGCGACAACATCAACAGCTACAACGCCAGAATCCCAAGATGCACTTCCACTCCAGAGTGAAACAGAGACGTCAGACTCAACAGATGCTTGAAAAACACtcagaaaaacagaaaacaaaagtctttatttttgtatcacagatatttatatatttatgcTTTTGTACATAAACATTGTTTTGTTATGCTGTATATAAGGATATGTTCATATTGAAAAATACATGTATCTGTATGTCACTTTCTGTGATGTAATCCTGCTATGTGATTGTATATTCATGTCTGCACACCTTGAGGAAAGGAGGGGGATTCTAATCCTGGTGTTGATTTAAGTCAGTCAGCGCATTCTGTTGAAGGTTTCATCTGACTGGCATGCCACTGTTTCTCTGACTAGGCACCAGCAGCACGTCTACCAGTCTGCTTTAAGTCATTCCCTGTAGAACTCCTATGTTCCCCTTATTTCCAACTTAAACAGACATCTGGTTATTATACGATCCTGATAGTCGCATGTCAGAAAAAATGGACAGGGTTGTGCTGCTCAGTAGAGGAACAGAGAGCAAGCTTTTTGAGGGAGCACTACCTCTGTGTTCAATGAAAATGCATTGTATACACCCCCCGTGTTGTATATACTCCCTCTTCTGTTCAGTGATGTCATAATGGTACAAGTGTCCGCCGTTTCCTAAAGAAATATGAATTTTTCATCAAAAGTATTAAATGTATGCAACTTAAAATCATTCTGCCTTCAGTAGTTTAGAGTACAAAGAGATATATTGTATAGTTATTTATTTTTAGGAGGGGAAGATTCTGGAAGTTTTGTTACCCAGTCACACCCAAGCCGATTTAAATTTGAGACTGAAATAACAGTCTGTTTCTGCTGGTCACTACTCCAAATGACTGTGCCTTGTGAGGGGATCTTTGACGTCTGCGTCAATATTATCCTTCCCCCACACATTGGTGCATCAGTATTAGCCTTCCCTGTGAGGCATCGGAGATCAAAATGAAGGAGTTCCTGAATCTGTAATCCATCTGTGTGTAGCTGTTGTCATGGTTACACAGGCTGGAGCACTATTGCATGTAAATAAAGCTTATAATGAAATCAC
>TU1081090
TTTCAATGTGAGAACTTGGGGAGCCGAAGAAAATGTCGGTGGCATCGCAGTAAATTACTAAAGCAGTAGCTTTAGAGGGAAAAGAAAAAGTGAAAAGTGTTTTTTCCCTGAAAATTTACTGAAGTAAAAAGCGGAGAAGGAGATCAAGTGGTGTCGTGAGGAGTGAATTCCAAATAAAGCACGTTTTGAGCTGCGAGACTTTGAGCAAGACAACCAGCAGGACATTGAGGTGGACGAGGGGAACACGGCTGTGATCCAGTGTCACCTCCCTGAGAGCCAGCCCAAGGCACAGGTTCGCTACAGTGTCAAACAGGAGTGGCTCGAGACCTCCAAAGGGAACTACCTGATCATGCCTTCAGGGAACCTGCAGATAGCCAACGCCACTCTGGACGACGAGGGGCCCTACAAGTGTGCTGCTTACAACCCTGTCACACAAGAGGTCAAGACCTCCACCTCCACTGACCGCCTGCGCATACGCCgttcGACGTCGGAGGCGGCCCGTATCATCTACCCCCCAGTGTCTCGCACCATCATGGTCACTAAGGGACAGCGTCTGGTCCTGGAGTGTGTGGCCAGCGGCATCCCGACCCCGCAGGTTACATGGGCCAAGGACGGTCAGGACCTGCGTTTCCATAACAACACGCGCTTCCTGCTCAGCAACCTGCTGATCGACGCAGCGGGCGAGGGCGACTCAGGGACGTACAAGTGTCACGCTGACAACGGCATCGGATCAGAGAGCGCCGCTACTGTGCTCTACAACGTGCAGGTGTTCGAGCCTCCCCAAGTAACCATGGAGCTCCAGCAGCAGGAGGTGTCGTGGGGGGAGAGTGTGCGCTTCAGCTGCCTGGCCAGGGGTAAACCCACCCCCTCTGTGGTATGGCTCCACAACGCCCGCCCCCTGGCCTCGTCACCACGCCACCGCCTGTCTGCCCGCGTGCTGCGTGTCATCAACGTGGGCCCGCAGGACAACGGCTTGTACCAGTGCATGGCTGAGAATGGTGTGGGTAGCTCGCAGGCTGCCGCCAGGCTGGTCACCTTACCAACCGGTGTTCCGTCTCGGCCAGGGAAGCTGCCCTCCATCCTGCGTCCACTGAGCCCAGACAAGGTGCTGCGGGAGCAGGTCCC

Function

NR:

description
brother of CDO

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935014.1 False 4565 mRNA 0.53 17 15747150 15800515
TU1081090 True 1125 TUCP 0.58 5 15747373 15793034

Neighbor

gene id symbol gene type direction distance location
spice1 spice1 coding upstream 52036 15688260 ~ 15695114 (+)
atp8a2 LOC106579514 coding upstream 88213 15594416 ~ 15660363 (+)
rnf6 LOC106579512 coding upstream 153250 15587284 ~ 15593900 (+)
LOC110535348 LOC106579510 coding upstream 200076 15539678 ~ 15547074 (+)
usp12a usp12 coding upstream 212462 15530175 ~ 15534688 (+)
atp6v1ab LOC106579446 coding downstream 16860 15817375 ~ 15839784 (+)
gramd1c LOC106579449 coding downstream 41333 15841848 ~ 15857765 (+)
zdhhc23b zdhhc23 coding downstream 58004 15858519 ~ 15865400 (+)
sh3kbp1 LOC106579452 coding downstream 272800 16073315 ~ 16098499 (+)
map3k15 map3k15 coding downstream 298090 16098605 ~ 16205054 (+)
G948092 NA non-coding upstream 18256 15728690 ~ 15728894 (+)
G948049 LOC106579518 non-coding upstream 47512 15695190 ~ 15699638 (+)
G948011 NA non-coding upstream 208707 15538165 ~ 15538443 (+)
G948005 rpl21 non-coding upstream 217208 15526437 ~ 15529942 (+)
G948318 NA non-coding downstream 26783 15827298 ~ 15828220 (+)
G948347 NA non-coding downstream 93929 15894444 ~ 15894934 (+)
G948410 LOC100194703 non-coding downstream 119570 15920085 ~ 15920430 (+)
G948413 LOC100136012 non-coding downstream 122044 15922559 ~ 15922830 (+)
G948426 NA non-coding downstream 132677 15933192 ~ 15933423 (+)
LOC110535338 LOC106579503 other upstream 307288 15375660 ~ 15478222 (+)
spata13 LOC106579541 other upstream 447777 15285042 ~ 15320246 (+)
G947301 LOC106590396 other upstream 859868 14886614 ~ 14887282 (+)
G948524 NA other downstream 253550 16054065 ~ 16054638 (+)
ccl20b LOC100135878 other downstream 409414 16209929 ~ 16211192 (+)
G948587 NA other downstream 522835 16323350 ~ 16326407 (+)
LOC110535372 mynn other downstream 532542 16327393 ~ 16338373 (+)

Expression


Co-expression Network