atp6v1ab (LOC106579446)


Basic Information

Item Value
gene id atp6v1ab
gene name LOC106579446
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15817375 ~ 15839784 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935015.1
TGATCTGAGCCTCATTTCTAATTGCTGAATAAAATGCTGTGATGCTGCTCATCAGCTGTTCTGTTCTATTGTTGGTGATTATTTAAATGTCAAACTATATACGAATATCGAGAGAAAGTATTGTCTTTCCTTGTATAGTCTTTGACAGCGCAGTGGGATTGAACCACAGTGGAATTAATCATTTGCAGTGGTTGTGAGTCTTGCCATAGAGTTTCTGCGCTTTGCAAAGCGCTGTGAATGAAGTCAGCTGATCATTTGCTATCGCATGATCGACACTCACATCTTCTCTAGGCAGAGGATCAAGACGGTGGACCGTTTCATTTCTGAAGATCTAGCCTGTCGGGATGGACCTGTCTAAACTGCCTAAGATCCGGGAtgaggagaaggagagcgagTTTGGATACGTCCATGGAGTATCCGGCCCAGTGGTGACGGCCACTGCCATGGCGGGAGCGGCCATGTATGAGCTGGTGAGAGTGGGCCACAGTGAGCTGGTGGGAGAGATCATCAGGCTGGAGGGAGACATGGCCACCATCCAGGTTTACGAGGAGACATCGGGCGTGTCTGTTGGGGACCCAGTGCTGCGGACTGGAAAGCCTCTGTCTGTGGAGCTGGGCCCAGGCATCATGGGCTCCATCTTTGACGGTATCCAGCGCCCCCTAAAGGACATCAACGACCTAACACAGAGCATCTACATCCCCCGCGGAGTCAACATCGGAGCCCTCAACCGAGACCTGAAATGGGAGTTCTCCCCCGTCAAGAGCTTACGGGTGGGCAGTCACATCACAGGGGGTGATATCTACGGGATGGTGTTTGAGAACTCCCTTATCAAGCACAAGATCATGCTGCccccgaggaacagaggaaccGTCACCTATGTGGCTCCCCCCGGAAACTATGACGTCTCGGACGTGGTGTTGGAGCTGGAGTTTGAGGGTATGAAGGAGAAGTTCACCATGGTCCAGGTCTGGCCAGTGCGACAGATTCGCCCGGTCACAGAGAAGTTACCGGCCAATCACCCACTGCTGACCGGACAGAGAGTACTGGACGCCCTCTTCCCgtgTGTCCAGGGAGGGACCACAGCCATCCCCGGAGCTTTTGGCTGTGGTAAAACTgtcatctcccagtccctgtccaAGTACTCCAACAGTGACGTCATCGTCTACGTAGGCTGCGGGGAGCGCGGGAACGAGATGTCAGAAGTATTGCGAGATTTCCCCGAGCTGACCATGGAGGTGGATGGGAAGActgagagcatcatgaagagaACAGCGCTGGTGGCCAACACCTCCAACATGCCTGTGGCTGCCAGAGAGGCCTCCATCTACACTGGGATCACACTGTCAGAGTACTTCAGGGACATGGGCTACAACGTGAGCATGATGGCTGACTCCACCTCTCGATGGGCCGAGGCTCTCAGGGAGATCTCTGGTCGACTGGCTGAGATGCCCGCTGACAGTGGTTATCCTGCCTACCTGGGTGCCCGTCTAGCGTCATTCTACGAGCGTGCTGGCAGGGTGAAGTGTTTGggaaacccagagagagagggcagcgtCAGCATCGTGGGGGCTgtgtctccccctggtggtgacTTCTCTGATCCTGTGACATCGGCTACCCTGGGTATCGTGCAGgtgttctggggtctggataaGAAGCTGGCCCAGAGGAAGCACTTTCCGTCAGTCAACTGGCTGATCAGCTACAGTAAGTACACGCGGGCGCTGGACGAGTACTACGACAAGCACTTCCCTGAGTTCGTCCCGCTGCGCACCAAGGCCAAGGAGATTCTGCAAGAGGAGGAGGACCTGGCTGAGATCGTACAGCTGGTCGGCAAGGCCTCGCTGGCCGAAACTGATAAGATCACCCTGGAGGTGGCCAAGCTCCTCAAGGATGACTTCCTGCAACAGAACGGTTACACCCCCTATGACCGGTTCTGTCCCTTCTATAAGACTGTTGGCATCCTGTCCAACATAATAGCCTTCTATGACATGGCACGGCACGCAGTGGAGACCACGGCTCAGAGCGACAACAAGATCACCTGGTCCATGATCAGAGAACACCTGGGAGAGATCCTCTACAGACTCAGCTCCATGAAGTTCAAGGACccagtgaaggagggagagaccaAGATCAAGGCTGACTACGCCCAGCTGCTGGAGGACATGCAGAACTCCTTCCGCAGCCTGGAGGACTGAGCCCCCGACCCCTCATCCCAGGGGCAGTGCATGTctgtcgtcccccccccctctctctgcagataCCTCCACTGCAGCCTGGAGGACTGAGCCCCTGACCCCTCATCCCAGAGGCAGTGcatgtctgccccccccccccccctctctctgcagataCCTCCACTGCAGCCTCACATTCCATTTCCTTGTGTTTACACCAAACCTGCCATCAGTTTAcccaatgtgtgtctgtgtgggcaaAAACAGAAGGAAATGTACTGTGTTCTTGTATTATGTTGCCTCCGTGTCTTTTCCCCAGCATGGTCAAAGATCTGCCCCATTACCTTTGTGTGTATGTTtacatgtctttgtgtgtgtgagacattTCATCTCACTCTTAACCCCTGCACTGCCCATCCCTCCCCATTTGTTTTGCACATGGTCTCTGGCCCTAGCTGTGCACCTGACGATGTCAGTTGATGTAATTATAGTTCAATACCCCCTCTATCTGTACAGAAAATTAACATGAAATACTTAAGCAGAGTGACTATTTATTGCAGGTGTGTGATGTGGACATCGCCTGGGCTGGTTGTTGTTTTTCTTATGATAGTGATTTATGTGGTGTAGTCTTGTACGTGTGTAAGAGGTGggctctcttgtcctctcctttccactgctcatccaggctgtatcacaaccggtcgtgattaAGTGTTGCattgggcggtgcacaattggcagcagcgtcgtccgggtttgtccggtgtaggccgtcattgtaaataagaatttgttcttaactgacttgcctagttaaataaaaaataggaTAAGTGTTTGAGTCCCAAATAATAAAATGTGTAAAACGAAATAAAGCAACAAAACAAAATGGTGAA

Function

NR:

description
V-type proton ATPase catalytic subunit A

GO: NA

KEGG:

id description
K02145 ATPeV1A, ATP6A; V-type H+-transporting ATPase subunit A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935015.1 True 3073 mRNA 0.53 15 15817375 15839784

Neighbor

gene id symbol gene type direction distance location
boc LOC106579445 coding upstream 16860 15747150 ~ 15800515 (+)
spice1 spice1 coding upstream 122261 15688260 ~ 15695114 (+)
atp8a2 LOC106579514 coding upstream 158438 15594416 ~ 15660363 (+)
rnf6 LOC106579512 coding upstream 223475 15587284 ~ 15593900 (+)
LOC110535348 LOC106579510 coding upstream 270301 15539678 ~ 15547074 (+)
gramd1c LOC106579449 coding downstream 2064 15841848 ~ 15857765 (+)
zdhhc23b zdhhc23 coding downstream 18735 15858519 ~ 15865400 (+)
sh3kbp1 LOC106579452 coding downstream 233531 16073315 ~ 16098499 (+)
map3k15 map3k15 coding downstream 258821 16098605 ~ 16205054 (+)
ccl20b LOC100135878 coding downstream 370207 16209929 ~ 16211192 (+)
G948115 NA non-coding upstream 36032 15778985 ~ 15781343 (+)
G948116 NA non-coding upstream 37078 15779633 ~ 15780297 (+)
G948092 NA non-coding upstream 88481 15728690 ~ 15728894 (+)
G948049 LOC106579518 non-coding upstream 117737 15695190 ~ 15699638 (+)
G948347 NA non-coding downstream 54660 15894444 ~ 15894934 (+)
G948410 LOC100194703 non-coding downstream 80301 15920085 ~ 15920430 (+)
G948413 LOC100136012 non-coding downstream 82775 15922559 ~ 15922830 (+)
G948426 NA non-coding downstream 93408 15933192 ~ 15933423 (+)
G948448 NA non-coding downstream 112066 15951850 ~ 15952070 (+)
LOC110535338 LOC106579503 other upstream 377513 15375660 ~ 15478222 (+)
spata13 LOC106579541 other upstream 518002 15285042 ~ 15320246 (+)
G948524 NA other downstream 214281 16054065 ~ 16054638 (+)
G948587 NA other downstream 483566 16323350 ~ 16326407 (+)
LOC110535372 mynn other downstream 493273 16327393 ~ 16338373 (+)

Expression


Co-expression Network