gramd1c (LOC106579449)


Basic Information

Item Value
gene id gramd1c
gene name LOC106579449
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15841848 ~ 15857765 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935017.1
CGGGTGGGCAGATACAAGAAATCATTCTCAAAAAAAATACGAGCTTGACACACCTCCAGAACAAGATCTTAGAGggtggaacagaacagagaatgATGGCTATTTTTAGAACCATTAGACAGCCATCAGTACGCAAATGGTATCCACGACTTCACAAACCTTCATTCATCCCAGACTCACAACTCGGTGCAGAAGATACATATATTCGGTCGTTTCCAGGCAGCGGAACAGTGGGTCTGATGGACCAGGTTTCTCGGTCAGGGGTTGGCAGTGACGTCACAGACGAGACCGCCTCCATGGGGGAGTACAGGTGGAGCTCTGAGGAACATGAGATGTCCGACCCTCAGGGCCAGTGTCTGGCCGCCCCCCAAGCCCTGCCTGCCCCCACCTACAAACAGAGAGTTGAGGAGTTCAAGAAGCTGTTCAGAGAACTGCCTGAGTCAGAGAGACTCATCATGGACTATACCTGTGCCCTCCAGAGAGACATCCTACTGCAGGGACGCCTCTACCTGTCAGAGAACTGGCTCTGTTTCTATAGCAATGTGTTTCGGGGGACAAAGATAGCCTTGACTCTGAGGGACATCAAGGCCATGTACAGAGGGAAGACAGCACGGCTGATCCCCAACGCCATACAGATCTGCACAGACTCagagaagTTGTTCTTCACTTCCTTCTCAGCCAGAGAGAAGAGTTACCAGGGAGTGTTCCGGATGTGGCAGAACACACTGATGGACAAGccACTGAGTAGTTTGGCGCTGTGGCAGATGGTCAAGCAGCACTATGGCAATGACCTGGGCCTGAGGATTATCGAGAGAGAAAGTCTACAGACATCAGCAGAATCAACCACGCAGAAACACACCAGCATGACCGTGAGGCCTGGTGGAGAGGACTCTGGGAGGCCGTCTACTCTGCGCCTCCAGCCGGGGGATCAGGGCTCCTGTGAGCCCACTGCGCCCCAGGGAGAGGACCTACCCTCACCCCTCGGACAGAGCTCCATCAACTCAGGAAACACGGATGATGCTTGCAGCACCTCGTCTAGGTGCACTCCTGACCCGTCCCTGGACCTCTCTGCCCCAGAGCGAGTCTCCAAGCGCTCTGAGCTCTCTCTGGACCTCAACTCTAACATGGACCGCTTCTCTGAACAGAGCGCAGAGGAGAGTGCAGAGGAGGaggagagggggagtgtcTCCCAGCAGCATGGCAGGCTGTATGTGAACACGGTCTTCAACATCAGTGCAGAAAAGATGTTTGAACTGCTCTTTACCGAATCTCACTTCATACGAAGATTCATGAACGCCAGGAAGATCACCAATGCCATCCTTACACGCTGGCAGAGTGACGCGTCTGGCTCCATGAAGAGGAGTCTCAActacaccatcaccatcaccaaccCTCTGGTGGGCAAGTTCTCCACCGCCACGGAGAACCAGATCCTGTACAAGGAGTTCAGGGAAGGTCAGTACTATCTCGTCGACTCGGAGGTCTACACACACGACGTCCCGTACCACGACTACTTCTACACTCAGAACCGCTACTGTATCATCCGCCATTCCAAACGCAAATGTCGACTCAGGGTGTACACTGATGTGAAGTATAAGAAGCAGCCGTGGGGGCTGGTCAAGTCCTTCATTACCAAGAACTCCTGGAGTGGCCTGGAGGACTACTTCAGACACCTGGAATCTGAGCTGATGGAAGAGGAGGCGGAGCTGAACCAGGGATGCGGAGACCCCGGTAAGATGATTGGCGGGTTGCATCATTGGCGGAGGAGGACGTTCAGTCGGACACTACAGGACCACCTGAAGCCCAGCAAGCAATACGAGCCTGACCTAGACCCTCACAGAGAGGGCAAGACGGATCCCATAGATATGAAGGGTCCACCTCGATGGAACATCTCTACCATCATAGCTGGGATGAGCATCATCCTCTTTCTCTGGCTGTGTGTTCCCAGTCTGCTTATCCTAACAGTACTGAACCTGGGGCTGTTCTTTAAGCTGTGGGCCATGGAGGATGTGGCCAACCGCATGTACCTGAGCACCAAGCACCACCTCCGGGAGAGGACCGAGAGCAGTTTTGCAGCTGACTTCTTTCCCGAACCGGCCCCAACATACAGGACCAGAGAGGAGACTTTGCTGCTGAAAACAGTGCTGCAGGACTCTATCAAGCTATTGGAGCAGCTCCGCAGTTCTCTGTCGCTGCTTCAGCAGAAATTTGTAACCAACAGAACAGCAATTCTGCAGTGACACCGTCACACCTGGCGACCTCACTACGCCCTCTGAAGCCTGGGGTTGTAAAGGCTACAAGGGCCTCTGAGGACTCTCTCGTAACCAGGGGTGTTGCTAAAGGGACAACTCATGCACAGACTTGTTACTAAGAGCAACAATGGTTCAAGTCCCAGGGCCTTTAATAGTGTGGTACCAGGTAGATGGatgttttaatttttatttaactaggcaagtcagtcaagaacaaattcttattaaagTTCAACTGTCGGCACTGCGCTGTGGAGGAAGAAAATGGTTCCCAACCATCAGCAACACTGGGAGATGACTGGTGGATTGGGGTTTATGTGGGGTTCTGTTTTCAGTTTGGTAGTTCTTTATTCTTCCTTAATGTTGGTGCTGGGTTTATTGTGATTAAGTTAGTTCTACTGCATGCCTCACTGTACTGCGTACCCCTTTGATTGACAAGCCAATCACAGAAGATGTGAGCCAATGGTGTGATGAGTGCAGCAGATCAGAACCAATGTTTTGATAGAAATGAATGCCAATGTAAGGAATCATTAAATATTTTTACTTTTTGCACAGTGCCTTGTGTACTTTTTATGGTTTTTAGATtcatttagatattttttttcaATTAGAAGGCTTTTAGAaagtaatttgtatttatttggatGCCAATGGGTTTCTGCTATtgtgaaaatgtgaaataagtatgcagttgagaaaaaaaagaaatgttaGCCTTGGATGGTTTGTGATTTTTCAGCTGGTTTGTAGATGTACAGCAGACCTCAATATCAGGGTTGTGTTCAGAAGGGTGCAATGTTCTGAACGCTGTAGATATAAATGCCTTTTATAGACCTGTCATGAAACCTTATTCTACATGAGTTTGTTCTACATAATATATTTGTATCTGTAACATTGCTCCCCACTGAACGTGACCCAGGTGAACTTTCTCAGGAGCATTTGGTTAGAACCAAAACATCCCGATGTGAATAATACTGATTACATTTTGTTAATCTTGATAGCTGTCCCATGTAGGCTAGGCTAGAGGGTTAGTGGCTGTTATGTAATTAATATTCCATCCGCATGCCACACCCATTCAAGAAGCCACAGCACTAAAACGTTGCACTGCTGTTGTGTACGTCCACTATAAGAATGTGACCACAAGTTTAGTCTGGACTCTCTGAGTTGAATCCACACTAGTGCCTTGTTAACTTGGTTTGAATTGTTATTATTGTAAATTACAATTTACAATGACGTGTATATGCTGCACAAAATTAACATTCAActcatttctgtgtgtgtggcgGAACAGCTTCAGACTGTATGTAACACCCAtccttattttttaaataaaagcacAGGAATCTTCCTACCGTTGTTACATGGAATCAATGTGAACCATTGGATGTGaatagtttacacacacacatttgtataATTTGTTTTATATTTGTTGGCTATTTTGTACAGTTGTTAGACAAAGATGTAATGTATTGTTGCTTTGAATAAAGAAACACTTTCCAGCCA
>XM_036935018.1
GTGGGCAGATACAAGAAATCATTCTCAAAAAAAATACGAGCTTGACACACCTCCAGAACAAGATCTTAGAGggtggaacagaacagagaatgATGGCTATTTTTAGAACCATTAGACAGCCATCAGTACGCAAATGGTATCCACGACTTCACAAACCTTCATTCATCCCAGACTCACAACTCGGTGCAGAAGATACATATATTCGGTCGTTTCCAGGCAGCGGAACAGTGGGTCTGATGGACCAGGTTTCTCGGTCAGGGGTTGGCAGTGACGTCACAGACGAGACCGCCTCCATGGGGGAGTACAGGTGGAGCTCTGAGGAACATGAGATGTCCGACCCTCAGGGCCAGTGTCTGGCCGCCCCCCAAGCCCTGCCTGCCCCCACCTACAAACAGAGAGTTGAGGAGTTCAAGAAGCTGTTCAGAGAACTGCCTGAGTCAGAGAGACTCATCATGGACTATACCTGTGCCCTCCAGAGAGACATCCTACTGCAGGGACGCCTCTACCTGTCAGAGAACTGGCTCTGTTTCTATAGCAATGTGTTTCGGGGGACAAAGATAGCCTTGACTCTGAGGGACATCAAGGCCATGTACAGAGGGAAGACAGCACGGCTGATCCCCAACGCCATACAGATCTGCACAGACTCagagaagTTGTTCTTCACTTCCTTCTCAGCCAGAGAGAAGAGTTACCAGGGAGTGTTCCGGATGTGGCAGAACACACTGATGGACAAGccACTGAGTAGTTTGGCGCTGTGGCAGATGGTCAAGCAGCACTATGGCAATGACCTGGGCCTGAGGATTATCGAGAGAGAAAGTCTACAGACATCAGCAGAATCAACCACGCAGAAACACACCAGCATGACCGTGAGGCCTGGTGGAGAGGACTCTGGGAGGCCGTCTACTCTGCGCCTCCAGCCGGGGGATCAGGGCTCCTGTGAGCCCACTGCGCCCCAGGGAGAGGACCTACCCTCACCCCTCGGACAGAGCTCCATCAACTCAGGAAACACGGATGATGCTTGCAGCACCTCGTCTAGGTGCACTCCTGACCCGTCCCTGGACCTCTCTGCCCCAGAGCGAGTCTCCAAGCGCTCTGAGCTCTCTCTGGACCTCAACTCTAACATGGACCGCTTCTCTGAACAGAGCGCAGAGGAGAGTGCAGAGGAGGaggagagggggagtgtcTCCCAGCAGCATGGCAGGCTGTATGTGAACACGGTCTTCAACATCAGTGCAGAAAAGATGTTTGAACTGCTCTTTACCGAATCTCACTTCATACGAAGATTCATGAACGCCAGGAAGATCACCAATGCCATCCTTACACGCTGGCAGAGTGACGCGTCTGGCTCCATGAAGAGGAGTCTCAActacaccatcaccatcaccaaccCTCTGGTGGGCAAGTTCTCCACCGCCACGGAGAACCAGATCCTGTACAAGGAGTTCAGGGAAGGTCAGTACTATCTCGTCGACTCGGAGGTCTACACACACGACGTCCCGTACCACGACTACTTCTACACTCAGAACCGCTACTGTATCATCCGCCATTCCAAACGCAAATGTCGACTCAGGGTGTACACTGATGTGAAGTATAAGAAGCAGCCGTGGGGGCTGGTCAAGTCCTTCATTACCAAGAACTCCTGGAGTGGCCTGGAGGACTACTTCAGACACCTGGAATCTGAGCTGATGGAAGAGGAGGCGGAGCTGAACCAGGGATGCGGAGACCCCGGTAAGATGATTGGCGGGTTGCATCATTGGCGGAGGAGGACGTTCAGTCGGACACTACAGGACCACCTGAAGCCCAGCAAGCAATACGAGCCTGACCTAGACCCTCACAGAGAGGGCAAGACGGATCCCATAGATATGAAGGGTCCACCTCGATGGAACATCTCTACCATCATAGCTGGGATGAGCATCATTCTGCTTATCCTAACAGTACTGAACCTGGGGCTGTTCTTTAAGCTGTGGGCCATGGAGGATGTGGCCAACCGCATGTACCTGAGCACCAAGCACCACCTCCGGGAGAGGACCGAGAGCAGTTTTGCAGCTGACTTCTTTCCCGAACCGGCCCCAACATACAGGACCAGAGAGGAGACTTTGCTGCTGAAAACAGTGCTGCAGGACTCTATCAAGCTATTGGAGCAGCTCCGCAGTTCTCTGTCGCTGCTTCAGCAGAAATTTGTAACCAACAGAACAGCAATTCTGCAGTGACACCGTCACACCTGGCGACCTCACTACGCCCTCTGAAGCCTGGGGTTGTAAAGGCTACAAGGGCCTCTGAGGACTCTCTCGTAACCAGGGGTGTTGCTAAAGGGACAACTCATGCACAGACTTGTTACTAAGAGCAACAATGGTTCAAGTCCCAGGGCCTTTAATAGTGTGGTACCAGGTAGATGGatgttttaatttttatttaactaggcaagtcagtcaagaacaaattcttattaaagTTCAACTGTCGGCACTGCGCTGTGGAGGAAGAAAATGGTTCCCAACCATCAGCAACACTGGGAGATGACTGGTGGATTGGGGTTTATGTGGGGTTCTGTTTTCAGTTTGGTAGTTCTTTATTCTTCCTTAATGTTGGTGCTGGGTTTATTGTGATTAAGTTAGTTCTACTGCATGCCTCACTGTACTGCGTACCCCTTTGATTGACAAGCCAATCACAGAAGATGTGAGCCAATGGTGTGATGAGTGCAGCAGATCAGAACCAATGTTTTGATAGAAATGAATGCCAATGTAAGGAATCATTAAATATTTTTACTTTTTGCACAGTGCCTTGTGTACTTTTTATGGTTTTTAGATtcatttagatattttttttcaATTAGAAGGCTTTTAGAaagtaatttgtatttatttggatGCCAATGGGTTTCTGCTATtgtgaaaatgtgaaataagtatgcagttgagaaaaaaaagaaatgttaGCCTTGGATGGTTTGTGATTTTTCAGCTGGTTTGTAGATGTACAGCAGACCTCAATATCAGGGTTGTGTTCAGAAGGGTGCAATGTTCTGAACGCTGTAGATATAAATGCCTTTTATAGACCTGTCATGAAACCTTATTCTACATGAGTTTGTTCTACATAATATATTTGTATCTGTAACATTGCTCCCCACTGAACGTGACCCAGGTGAACTTTCTCAGGAGCATTTGGTTAGAACCAAAACATCCCGATGTGAATAATACTGATTACATTTTGTTAATCTTGATAGCTGTCCCATGTAGGCTAGGCTAGAGGGTTAGTGGCTGTTATGTAATTAATATTCCATCCGCATGCCACACCCATTCAAGAAGCCACAGCACTAAAACGTTGCACTGCTGTTGTGTACGTCCACTATAAGAATGTGACCACAAGTTTAGTCTGGACTCTCTGAGTTGAATCCACACTAGTGCCTTGTTAACTTGGTTTGAATTGTTATTATTGTAAATTACAATTTACAATGACGTGTATATGCTGCACAAAATTAACATTCAActcatttctgtgtgtgtggcgGAACAGCTTCAGACTGTATGTAACACCCAtccttattttttaaataaaagcacAGGAATCTTCCTACCGTTGTTACATGGAATCAATGTGAACCATTGGATGTGaatagtttacacacacacatttgtataATTTGTTTTATATTTGTTGGCTATTTTGTACAGTTGTTAGACAAAGATGTAATGTATTGTTGCTTTGAATAAAGAAACACTTTCCAGCCA

Function

NR:

description
GRAM domain-containing protein 1C-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935017.1 False 3758 mRNA 0.48 19 15841848 15857765
XM_036935018.1 True 3728 mRNA 0.47 19 15841851 15857765

Neighbor

gene id symbol gene type direction distance location
atp6v1ab LOC106579446 coding upstream 2064 15817375 ~ 15839784 (+)
boc LOC106579445 coding upstream 41333 15747150 ~ 15800515 (+)
spice1 spice1 coding upstream 146734 15688260 ~ 15695114 (+)
atp8a2 LOC106579514 coding upstream 182911 15594416 ~ 15660363 (+)
rnf6 LOC106579512 coding upstream 247948 15587284 ~ 15593900 (+)
zdhhc23b zdhhc23 coding downstream 754 15858519 ~ 15865400 (+)
sh3kbp1 LOC106579452 coding downstream 215550 16073315 ~ 16098499 (+)
map3k15 map3k15 coding downstream 240840 16098605 ~ 16205054 (+)
ccl20b LOC100135878 coding downstream 352226 16209929 ~ 16211192 (+)
tfr1b LOC106579454 coding downstream 383816 16241581 ~ 16253322 (+)
G948318 NA non-coding upstream 13628 15827298 ~ 15828220 (+)
G948115 NA non-coding upstream 60505 15778985 ~ 15781343 (+)
G948116 NA non-coding upstream 61551 15779633 ~ 15780297 (+)
G948092 NA non-coding upstream 112954 15728690 ~ 15728894 (+)
G948049 LOC106579518 non-coding upstream 142210 15695190 ~ 15699638 (+)
G948347 NA non-coding downstream 36679 15894444 ~ 15894934 (+)
G948410 LOC100194703 non-coding downstream 62320 15920085 ~ 15920430 (+)
G948413 LOC100136012 non-coding downstream 64794 15922559 ~ 15922830 (+)
G948426 NA non-coding downstream 75427 15933192 ~ 15933423 (+)
G948448 NA non-coding downstream 94085 15951850 ~ 15952070 (+)
LOC110535338 LOC106579503 other upstream 401986 15375660 ~ 15478222 (+)
spata13 LOC106579541 other upstream 542475 15285042 ~ 15320246 (+)
G948524 NA other downstream 196300 16054065 ~ 16054638 (+)
G948587 NA other downstream 465585 16323350 ~ 16326407 (+)
LOC110535372 mynn other downstream 475292 16327393 ~ 16338373 (+)

Expression


Co-expression Network