ccl20b (LOC100135878)


Basic Information

Item Value
gene id ccl20b
gene name LOC100135878
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 16209929 ~ 16211192 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124254.1
CTGAAGATTAGGATGATAAGCTGTAGAGTCTGTGTCCTGGctgctctgttctctctcctcatcatcacCCTCATTCCCACCACACAATCAGcggACTGCTGTCTGAAGTTCACTCGGCGTCCAGTGCACTGCCGATGGCTGAAAGGCTACACCTTCCAAGACATTACTTCCTCATGTGACCTCAACGCTGTCATCTTCCAGAATCTAAGGAACAAGTTTGTGTGTGCCGACCCCTCTCAAGACTGGACCAAGAGGGTACAACGCTGTCTGCGCAAGCGTCAGGAGAAGAAATCCCAACTGAAGAAAAGGGTCTGAACTCATGTTGCCATGGAGAGGGCTTTCATTACAGAACACCATGTAATACATTATTGATTTAATGTTATATTTTACTGAGACAAACAGCAATATATTTCAATATACAGAGAGATTCATGAAGGTTAAGATGTTTAAATAATTTAATATAAGTGAATATTTTTCATCATATCTGTGATTCTGAGGTAGTTTGAGTTTCATCTCAGTTTAACTGTATTTATCATCGTTGTTGTTCTGTTTTATAAACAGCAGGTGTAGTATTTCTGATACGCATGTAGAAACATTAAAACATAGTTTTCACACATAGTACCACAAAATATTTTTGTGTTGATGTTTCATATCCTCTCTCCAATTGAAGCCAGAGAAAACCTTTTTAACTTTGTATTTCCAAAGTGTCCAAATCTCTATATGAGTTTTACTGAAGTGTACTTACTTTAAGCTCAAAGCtatgaaatagataataaaatgGGTATTTG
>TU1081677
TCAACTCTATTGAAAAACActttctctctcgcccccttTCTCAGCATCTCTGTGGGACCCATCTGAAGATTAGGATGATAAGCTGTAGAGTCTGTGTCCTGGctgctctgttctctctcctcatcatcacCCTCATTCCCACCACACAATCAGcggACTGCTGTCTGAAGTTCACTCGGCGTCCAGTGCACTGCCGATGGCTGAAAGGCTACACCTTCCAAGACATTACTTCCTCATGTGACCTCAACGCTGTCATCTTCCAGAATCTAAGGAACAAGTTTGTGTGTGCCGACCCCTCTCAAGACTGGACCAAGAGGGTACAACGCTGTCTGCGCAAGCGTCAGGAGAAGAAATCCCAACTGAAGAAAAGGGTCTGAACTCATGTTGCCATGGAGAGGGCTTTCATTACAGAACACCATGTAATACATTATTGATTTAATGTTATATTTTACTGAGACAAACAGCAATATATTTCAATATACAGAGAGATTCATGAAG
>TU1081678
AAGCAAGGAGAGAGGATTCGGGGAAAGACAATTGACATTCAGTCACTGTGGTGTGTAATGTGCGTTGACATTGTACTGTGTTGTGGCAGCTTCCAGAATCTAAGGAACAAGTTTGTGTGTGCCGACCCCTCTCAAGACTGGACCAAGAGGGTACAACGCTGTCTGCGCAAGCGTCAGGAGAAGAAATCCCAACTGAAGAAAAGGGTCTGAACTCATGTTGCCATGGAGAGGGCTTTCATTACAGAACACCATGTAATACATTATTGATTTAATGTTATATTTTACTGAGACAAACAGCAATATATTTCAATATACAGAGAGATTCATGAAG

Function

NR:

description
chemokine CK-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124254.1 False 788 mRNA 0.38 4 16209991 16211192
TU1081677 False 498 TUCP 0.46 4 16209929 16210840
TU1081678 True 331 lncRNA 0.42 2 16210391 16210840

Neighbor

gene id symbol gene type direction distance location
map3k15 map3k15 coding upstream 4937 16098605 ~ 16205054 (+)
sh3kbp1 LOC106579452 coding upstream 111492 16073315 ~ 16098499 (+)
zdhhc23b zdhhc23 coding upstream 344591 15858519 ~ 15865400 (+)
gramd1c LOC106579449 coding upstream 352226 15841848 ~ 15857765 (+)
atp6v1ab LOC106579446 coding upstream 370207 15817375 ~ 15839784 (+)
tfr1b LOC106579454 coding downstream 30389 16241581 ~ 16253322 (+)
tnk2a LOC106579455 coding downstream 42817 16254009 ~ 16274994 (+)
adipoqa LOC106579495 coding downstream 77752 16288944 ~ 16290744 (+)
LOC110535372 mynn coding downstream 116201 16327393 ~ 16338373 (+)
lrrc34 lrrc34 coding downstream 132136 16343328 ~ 16355927 (+)
G948554 NA non-coding upstream 35419 16174292 ~ 16174572 (+)
G948545 NA non-coding upstream 36276 16136747 ~ 16173715 (+)
G948542 NA non-coding upstream 121017 16088465 ~ 16088974 (+)
G948494 NA non-coding upstream 205071 16004710 ~ 16004920 (+)
G948583 NA non-coding downstream 54954 16266146 ~ 16278483 (+)
G948577 LOC106579456 non-coding downstream 87164 16298356 ~ 16298602 (+)
G948626 LOC106579456 non-coding downstream 87746 16298938 ~ 16299177 (+)
G948630 NA non-coding downstream 88684 16299876 ~ 16300305 (+)
G948629 NA non-coding downstream 90654 16301846 ~ 16302047 (+)
G948524 NA other upstream 155353 16054065 ~ 16054638 (+)
boc LOC106579445 other upstream 416957 15747150 ~ 15800515 (+)
atp8a2 LOC106579514 other upstream 550529 15594416 ~ 15660363 (+)
rnf6 LOC106579512 other upstream 620215 15587284 ~ 15593900 (+)
G948587 NA other downstream 112158 16323350 ~ 16326407 (+)
LOC110535387 LOC106579475 other downstream 332623 16543682 ~ 16565783 (+)
G948710 NA other downstream 343008 16554200 ~ 16601892 (+)
G951511 NA other downstream 2915473 19126665 ~ 19127085 (+)

Expression


Co-expression Network