XLOC_002835 (bbx)


Basic Information

Item Value
gene id XLOC_002835
gene name bbx
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 28470307 ~ 28525611 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005253
GTCATCTTCATCGCATGATACAGCCTGACTGACAGATCCATCCTCATCTTTCAAATACCGTATTTCCATATTCTGTGGCTCTGGTCAGCAGCAGAATGAAGGGTGGAGGTGGAGGGAAAGAGCCTCCGGGGGAGGGCGAGGTCAGCGGGAAGAGGCCCAAACGCAAGTGTCTGCAGTGGCACCCGCTGCTTGCCAAGAAAGCTCCAGACTTctctgaggaagaggaggaggaagacgaAGAGGAGCTGGAGAAGGAGCCGGTGTTATGTGCGGAGAGCAGTGTTCAGGAGGGAGAGTGTGGCGGGATGGAGGATGACAGTGAAGAATACTCCTCTGAACAGCGGGCTCGGCGGCCCATGAACGCCTTTCTGCTATTCTGCAAACGCCATCGCTCGCTGGTCCGTCAGGAGCATCCACGATTAGACAACCGAGGAGCCACTAAAATCCTGGCCGACTGGTGGGCCGTATTGGACCCCAAAGAAAAGCAGAAATACACAGACATGGCCAAGGAGTACAAGGATGCGTTCATGAAGGCTAACCCCGGATACAAATGGTGTCCCGCCACCAACAAGCCAGTAAAGAGTCCTTCTCATTCCGTTAGCAATTCCCGCAAGAAGGTCTGGTCTCTTCCCTCCAACCCAAGCAAGGACCCTTCAGTTGCCAAAAAACAGCCCAAAACTGACAGCACACCTCAGCTCAACTTCGCCATGGCTGATCCCAATAAGATGGGTGGCCTAAGCATGCTGCTGTTAGCTGGGGAACACGCACTGACCGCCAGAGAGATTTCCTCCAGCTCTTCCCAGACTGGATGCACAGATGTTGCTAAGCACACTGGGAAATCAGCCCTTTTCCAGCTGGCTGAGATTTCTTCCAGTCCAGCACAGTCAGCTGGAGGAAGTAAGAATGCAGAGGACACAAGCTCACTTACACATGTAGAGGCTTCTGGACCGTCTCAGCCAAGCTCACCAGACCTGCCCAAGAGTTGTGTTAAATCACCCCTGTTTCAGCTGGCTGAGCAGATCTCTTCCAGTAGGTCTCCGTCAGCATCTGAAGGGAGACAGTGTGGCCAGTCGGCCCTTTTCCAGCTCGCTGAGATGTGTTTGGCCTCTGAGGCTGAAAAGATGGAAGCTCGATCATCTCAGCCGTCTGGCGGTTCTTCCTCTTTATGTGCTCAGAATAGCACAGAAATCCCAGACCGTGAAGAGCAGAAAGAAACTTCTGAGCTTCCTCTCACCACATCTTCATCAACCTCTACCTCCGGCTCCACTTCGTCTACCCCTACTGAAACCAGCCCATGTAAAACAcccaagaagaagaaaaagaagaaagaaaacaagGAGTCAGATGAAAATCCGGCTTCGCCTAAAAAGATGAAGAAACGGCAGTCGCCCGAGTCGGACCTGGACAGCGTGACGTTCACCATCGAAGCGGTAGTGAAAGGAGCTTGGGGTTCAGAAGAGACGCCCAAGAAGAAACCCCGTCCCCCAGAGAGCGAAAGCAGCCTGACTGCGGAACAATCTCCGTCTGTGAAGAAGAAAACAAAACCCAAACCAAAAAAACAACTGAAGTTAAAAGACGACGCCATgcaagaagaggaagaagatgcAGACAAAGTTGCAAATAAGCCTCAGGATGTTGAGATGATAACCGAGGAAGCTCCCATGACCCCTAAAACAGAGTGTGAGGATGAATTTGATGTAAAAGTGGAGCCCCCTTGTGGCATGGAGGACGCAATGTTGCAATTCTCTCCCATGGAGCCAACAGAAGTGGACGAGAAAGAAGACTCTGACGCCAAACCACTTGAAAGCAGACAGGAAGATAAAGACCCAGAGGTGAAGCAGGAGGTCTGTGGGTCCAGGAAGTCTGAGAGAAGCTGTAAAGGAGCGCTTTATAAGACTCTGGTGTCTGAAGGGATGCTCACATCGCTGAGAGCAAATGTAGACAGAGGAAAAAGAGGTTCAATGCGAGGGAGTGTGTCAGATCATGAGGGCAGCTGGAATGACGAGAACTGGGGATTTTCTCAAGCTGCTACCAGCAACCCGAAGAAACTCAAGAAGTCCAAGTCTAAAGATGAAACCACCCCAGGACTAGGAAAGCTTGAGGAGGAGTTCGAGAAAAAGTTCAACAGCTTACCACAGTACAGCCCCCTGACATTTGACAAAAAGAGCGTGGCGGTcaccaagaagaaaaaaaacagtacGTCCAGCCCTCCCGAACCGCCCAAAACCTGCAAGGGTTCATCCTCATCTCAGAAAAAGACCTTATTCCACAAGATAGTGAACAAGTACAAACACAGGAAGGAGAAATCCAGTGGCACAGACAAAGaaGTCGCCATGTTTGAGCCTGTGGCTACAGAAAGCAGTCCAGCGGTGAAGTCGAGCAGTCCGTGTGTGTCTCCTTCTCCCGAACCGCAGAAGATTTTGGACATACCTGTGGGAAGTCAGAAAAGAAAGGCTCGGAAGAATAAAATCACACATTTGGTGCGCACGGCTGATGGTCGTGTTTCACCTGCAGAGGCAGAAGACAAATCTAAGGATCAGACCAAGAATCAAGATGAAAAGCCATTCACTCAAGAGACATTATGCAATAGAGGGGTTTGCTACACTGACCCGAGATCAGCAGAAGCAGACTTGACAGATGCGCCGGGCAGCCTCCCGGCCTTCTTCAGCTTAGCTGCTCTTGCTGAGGTTGCAGCCATGGAGAACGTGCACAGAGCCCAGCGTGCTGTGAGCATCCCGACTGAAGCTCAAGTGAAGGACATGGCTCCTGTGCTGATTTCTTGTGCGGACCAGTGA
>TCONS_00005254
AAACCAGCATGCAGGCTAGCTTAACCAACATGTGGAGACAGCAAACCAATTAATGCTGTTATACAGTGTTTATAACAGCAGGAATGTGGTTAAGGTCCGTATTTTACGAAAGATTGGCAGAAAAGTACAAACTTAGCAGTTATAAAAGCATCGCGTCGGCCAGGTAGCTATGATGAGTTGTTGAccctcttcctcttcctcatcattcattcatcaatacCAACGTCATGAATAACACTGGACGTTCATAGCTTGTGCTATTCCAGTTGTTGTGCTATCAAAATGCAATGTCCAGTGTCATGTTAGCACGCACAGCCATCGCATGAAAAACTCTCATAAAGAGGGCACCGAGACAGGAAAACGGTGCACCAGTATGTGAGAGAACGAGTCTGTGACACGAATAAACACACGTATGGCTTTATATCGTCTTTCAACCACATCGAGAATGATAAAAGAGTTAATATAATGGAAAACACATCAATGTTGTTCACTAATGTGTGTTTGCACTCGGTGACTGTTCAGTGTGTGTTGGGATTGTTCTGAAGCGCTGTCACTCGCTCTATTTTTCTCGATGGCGTCTTTATATCGATAAATTCACTCCACCTGCTGATCTAATGAATGATAGTGCACACTTCTTCTGTAACTATTGTATGTTTTGATGGTTATGTGGATGTCCTGGACATTATGAAGATGTGGTTTTAATCTCTCTATCTCGGAACAGTGCCGAGATGTTTCACGCGCTCTGAGTGGCTGTCTCGGACTGTCACTCAAGCGTGTGACCAATCACAACTGTCCTTACATGAAAACTATATTTTCACTCACTGCATGTACAGTAGACTGTATGTTGCAAAAAAGTGAACAGAGAAAGACACCATCGAAGGGGTGCGAGAGGTGGACAACGGACCTGTTAAGTCACTTTGGTGGCCTGTTGCAGGGTCAGCAGCAGAATGAAGGGTGGAGGTGGAGGGAAAGAGCCTCCGGGGGAGGGCGAGGTCAGCGGGAAGAGGCCCAAACGCAAGTGTCTGCAGTGGCACCCGCTGCTTGCCAAGAAAGCTCCAGACTTctctgaggaagaggaggaggaagacgaAGAGGAGCTGGAGAAGGAGCCGGTGTTATGTGCGGAGAGCAGTGTTCAGGAGGGAGAGTGTGGCGGGATGGAGGATGACAGTGAAGAATACTCCTCTGAACAGCGGGCTCGGCGGCCCATGAACGCCTTTCTGCTATTCTGCAAACGCCATCGCTCGCTGGTCCGTCAGGAGCATCCACGATTAGACAACCGAGGAGCCACTAAAATCCTGGCCGACTGGTGGGCCGTATTGGACCCCAAAGAAAAGCAGAAATACACAGACATGGCCAAGGAGTACAAGGATGCGTTCATGAAGGCTAACCCCGGATACAAATGGTGTCCCGCCACCAACAAGCCAGTAAAGAGTCCTTCTCATTCCGTTAGCAATTCCCGCAAGAAGGTCTGGTCTCTTCCCTCCAACCCAAGCAAGGACCCTTCAGTTGCCAAAAAACAGCCCAAAACTGACAGCACACCTCAGCTCAACTTCGCCATGGCTGATCCCAATAAGATGGGTGGCCTAAGCATGCTGCTGTTAGCTGGGGAACACGCACTGACCGCCAGAGAGATTTCCTCCAGCTCTTCCCAGACTGGATGCACAGATGTTGCTAAGCACACTGGGAAATCAGCCCTTTTCCAGCTGGCTGAGATTTCTTCCAGTCCAGCACAGTCAGCTGGAGGAAGTAAGAATGCAGAGGACACAAGCTCACTTACACATGTAGAGGCTTCTGGACCGTCTCAGCCAAGCTCACCAGACCTGCCCAAGAGTTGTGTTAAATCACCCCTGTTTCAGCTGGCTGAGCAGATCTCTTCCAGTAGGTCTCCGTCAGCATCTGAAGGGAGACAGTGTGGCCAGTCGGCCCTTTTCCAGCTCGCTGAGATGTGTTTGGCCTCTGAGGCTGAAAAGATGGAAGCTCGATCATCTCAGCCGTCTGGCGGTTCTTCCTCTTTATGTGCTCAGAATAGCACAGAAATCCCAGACCGTGAAGAGCAGAAAGAAACTTCTGAGCTTCCTCTCACCACATCTTCATCAACCTCTACCTCCGGCTCCACTTCGTCTACCCCTACTGAAACCAGCCCATGTAAAACAcccaagaagaagaaaaagaagaaagaaaacaagGAGTCAGATGAAAATCCGGCTTCGCCTAAAAAGATGAAGAAACGGCAGTCGCCCGAGTCGGACCTGGACAGCGTGACGTTCACCATCGAAGCGGTAGTGAAAGGAGCTTGGGGTTCAGAAGAGACGCCCAAGAAGAAACCCCGTCCCCCAGAGAGCGAAAGCAGCCTGACTGCGGAACAATCTCCGTCTGTGAAGAAGAAAACAAAACCCAAACCAAAAAAACAACTGAAGTTAAAAGACGACGCCATgcaagaagaggaagaagatgcAGACAAAGTTGCAAATAAGCCTCAGGATGTTGAGATGATAACCGAGGAAGCTCCCATGACCCCTAAAACAGAGTGTGAGGATGAATTTGATGTAAAAGTGGAGCCCCCTTGTGGCATGGAGGACGCAATGTTGCAATTCTCTCCCATGGAGCCAACAGAAGTGGACGAGAAAGAAGACTCTGACGCCAAACCACTTGAAAGCAGACAGGAAGATAAAGACCCAGAGGTGAAGCAGGAGGTCTGTGGGTCCAGGAAGTCTGAGAGAAGCTGTAAAGGAGCGCTTTATAAGACTCTGGTGTCTGAAGGGATGCTCACATCGCTGAGAGCAAATGTAGACAGAGGAAAAAGAGGTTCAATGCGAGGGAGTGTGTCAGATCATGAGGGCAGCTGGAATGACGAGAACTGGGGATTTTCTCAAGCTGCTACCAGCAACCCGAAGAAACTCAAGAAGTCCAAGTCTAAAGATGAAACCACCCCAGGACTAGGAAAGCTTGAGGAGGAGTTCGAGAAAAAGTTCAACAGCTTACCACAGTACAGCCCCCTGACATTTGACAAAAAGAGCGTGGCGGTcaccaagaagaaaaaaaacagtacGTCCAGCCCTCCCGAACCGCCCAAAACCTGCAAGGGTTCATCCTCATCTCAGAAAAAGACCTTATTCCACAAGATAGTGAACAAGTACAAACACAGGAAGGAGAAATCCAGTGGCACAGACAAAGaaGTCGCCATGTTTGAGCCTGTGGCTACAGAAAGCAGTCCAGCGGTGAAGTCGAGCAGTCCGTGTGTGTCTCCTTCTCCCGAACCGCAGAAGATTTTGGACATACCTGTGGGAAGTCAGAAAAGAAAGGCTCGGAAGAATAAAATCACACATTTGGTGCGCACGGCTGATGGTCGTGTTTCACCTGCAGAGGAAGACAAATCTAAGGATCAGACCAAGAATCAAGATGAAAAGCCATTCACTCAAGAGACATTATGCAATAGAGGGGTTTGCTACACTGACCCGAGATCAGCAGAAGCAGACTTGACAGATGCGCCGGGCAGCCTCCCGGCCTTCTTCAGCTTAGCTGCTCTTGCTGAGGTTGCAGCCATGGAGAACGTGCACAGAGCCCAGCGTGCTGTGAGCATCCCGACTGAAGCTCAAGTGAAGGACATGGCTCCTGTGCTGATTTCTTGTGCGGACCAGTGA
>TCONS_00005255
aaGTCGCCATGTTTGAGCCTGTGGCTACAGAAAGCAGTCCAGCGGTGAAGTCGAGCAGTCCGTGTGTGTCTCCTTCTCCCGAACCGCAGAAGATTTTGGACATACCTGTGGGAAGTCAGAAAAGAAAGGCTCGGAAGAATAAAATCACACATTTGGTGCGCACGGCTGATGGTCGTGTTTCACCTGCAGAGGCAGAAGACAAATCTAAGGATCAGACCAAGAATCAAGATGAAAAGCCATTCACTCAAGAGACATTATGCAATAGAGGGGTTTGCTACACTGACCCGAGATCAGCAGAAGCAGACTTGACAGATGCGCCGGGCAGCCTCCCGGCCTTCTTCAGCTTAGCTGCTCTTGCTGAGGTTGCAGCCATGGAGAACGTGCACAG
>TCONS_00005256
AAGAAACGGCAGTCGCCCGAGTCGGACCTGGACAGCGTGACGTTCACCATCGAAGCGGTAGTGAAAGGAGCTTGGGGTTCAGAAGAGACGCCCAAGAAGAAACCCCGTCCCCCAGAGAGCGAAAGCAGCCTGACTGCGGAACAATCTCCGTCTGTGAAGAAGAAAACAAAACCCAAACCAAAAAAACAACTGAAGTTAAAAGACGACGCCATgcaagaagaggaagaagatgcAGACAAAGTTGCAAATAAGCCTCAGGATGTTGAGATGATAACCGAGGAAGCTCCCATGACCCCTAAAACAGAGTGTGAGGATGAATTTGATGTAAAAGTGGAGCCCCCTTGTGGCATGGAGGACGCAATGTTGCAATTCTCTCCCATGGAGCCAACAGAAGTGGACGAGAAAGAAGACTCTGACGCCAAACCACTTGAAAGCAGACAGGAAGATAAAGACCCAGAGGTGAAGCAGGAGGTCTGTGGGTCCAGGAAGTCTGAGAGAAGCTGTAAAGGAGCGCTTTATAAGACTCTGGTGTCTGAAGGGATGCTCACATCGCTGAGAGCAAATGTAGACAGAGGAAAAAGAGGTTCAATGCGAGGGAGTGTGTCAGATCATGAGGGCAGCTGGAATGACGAGAACTGGGGATTTTCTCAAGCTGCTACCAGCAACCCGAAGAAACTCAAGAAGTCCAAGTCTAAAGATGAAACCACCCCAGGACTAGGAAAGCTTGAGGAGGAGTTCGAGAAAAAGTTCAACAGCTTACCACAGTACAGCCCCCTGACATTTGACAAAAAGAGCGTGGCGGTcaccaagaagaaaaaaaacagtacGTCCAGCCCTCCCGAACCGCCCAAAACCTGCAAGGGTTCATCCTCATCTCAGAAAAAGACCTTATTCCACAAGATAGTGAACAAGTACAAACACAGGAAGGAGAAATCCAGTGGCACAGACAAAG
>TCONS_00005257
AAATAATATAAGTGTCTGTGGGGCTACTGTACGGACGGCCAGTGCAGAACTGTTCTGATGTGTCAATAAGTTTGAGGCTGGAATGAGAAGGCCCTGGCGTTCCGACCGGATTTCAGGGGTCATCTTCATCGCATGATACAGCCTGACTGACAGATCCATCCTCATCTTTCAAATACCGTATTTCCATATTCTGTGGCTCTGGTCAGCAGCAGAATGAAGGGTGGAGGTGGAGGGAAAGAGCCTCCGGGGGAGGGCGAGGTCAGCGGGAAGAGGCCCAAACGCAAGTGTCTGCAGTGGCACCCGCTGCTTGCCAAGAAAGCTCCAGACTTctctgaggaagaggaggaggaagacgaAGAGGAGCTGGAGAAGGAGCCGGTGTTATGTGCGGAGAGCAGTGTTCAGGAGGGAGAGTGTGGCGGGATGGAGGATGACAGTGAAGAATACTCCTCTGAACAGCGGGCTCGGCGGCCCATGAACGCCTTTCTGCTATTCTGCAAACGCCATCGCTCGCTGGTCCGTCAGGAGCATCCACGATTAGACAACCGAGGAGCCACTAAAATCCTGGCCGACTGGTGGGCCGTATTGGACCCCAAAGAAAAGCAGAAATACACAGACATGGCCAAGGAGTACAAGGATGCGTTCATGAAGGCTAACCCCGGATACAAATGGTGTCCCGCCACCAACAAGCCAGTAAAGAGTCCTTCTCATTCCGTTAGCAATTCCCGCAAGAAGGTCTGGTCTCTTCCCTCCAACCCAAGCAAGGACCCTTCAGTTGCCAAAAAACAGCCCAAAACTGACAGCACACCTCAGCTCAACTTCGCCATGGCTGATCCCAATAAGATGGGTGGCCTAAGCATGCTGCTGTTAGCTGGGGAACACGCACTGACCGCCAGAGAG
>TCONS_00005258
ACTTGAACGCGCGGAGGGGGAGGAGGGCAGCGAGAGAAAACAAACCGAGAAAATTGTTAGCCTGAAACGAAAGTACCACTACCAAGTGCCATTCGTCCCCCACCGTTATTTGTTTTCGGAGCGATCTCTGCGATTGCGATGTAGTTTTGTCGACTTCACGCTGCGGTGTTGTTGCTCCTTTCCAAGCATCCGGTAAAAATAATATAAGTGTCTGTGGGGCTACTGTACGGACGGCCAGTGCAGAACTGTTCTGATGTGTCAATAAGTTTGAGGCTGGAATGAGAAGGCCCTGGCGTTCCGACCGGATTTCAGGGGGTCAGCAGCAGAATGAAGGGTGGAGGTGGAGGGAAAGAGCCTCCGGGGGAGGGCGAGGTCAGCGGGAAGAGGCCCAAACGCAAGTGTCTGCAGTGGCACCCGCTGCTTGCCAAGAAAGCTCCAGACTTctctgaggaagaggaggaggaagacgaAGAGGAGCTGGAGAAGGAGCCGGTGTTATGTGCGGAGAGCAGTGTTCAGGAGGGAGAGTGTGGCGGGATGGAGGATGACAGTGAAGAATACTCCTCTGAACAGCGGGCTCGGCGGCCCATGAACGCCTTTCTGCTATTCTGCAAACGCCATCGCTCGCTGGTCCGTCAGGAGCATCCACGATTAGACAACCGAGGAGCCACTAAAATCCTGGCCGACTGGTGGGCCGTATTGGACCCCAAAGAAAAGCAGAAATACACAGACATGGCCAAGGAG

Function

symbol description
bbx Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in head.

GO: NA

KEGG:

id description
ko03000 Transcription factors

Ensembl:

ensembl_id ENSDARG00000012699

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005253 False 2795 mRNA 0.51 16 28470307 28513861
TCONS_00005254 False 3644 mRNA 0.49 16 28470307 28525611
TCONS_00005255 False 388 mRNA 0.51 2 28473509 28477023
TCONS_00005256 False 952 mRNA 0.49 4 28477392 28483672
TCONS_00005257 False 900 mRNA 0.54 6 28498377 28519309
TCONS_00005258 True 744 mRNA 0.55 3 28502299 28519505

Neighbor

gene id symbol gene type direction distance location
XLOC_002834 NA coding downstream 5281 28460213 ~ 28465026 (-)
XLOC_002833 CR392341.3 coding downstream 15136 28454500 ~ 28455171 (-)
XLOC_002832 CR392341.2 coding downstream 21439 28447906 ~ 28448868 (-)
XLOC_002831 CR392341.1 coding downstream 26567 28442740 ~ 28443740 (-)
XLOC_002830 NA coding downstream 52128 28417651 ~ 28418179 (-)
XLOC_002836 alcama coding upstream 206138 28731749 ~ 28835812 (-)
XLOC_002837 BX537347.2 coding upstream 396524 28922135 ~ 28922251 (-)
XLOC_002838 BX537347.1 coding upstream 397906 28923517 ~ 28923633 (-)
XLOC_002839 si:ch211-103f14.3 coding upstream 562199 29087810 ~ 29101849 (-)
XLOC_002840 zpld1a coding upstream 587145 29112756 ~ 29120535 (-)
XLOC_002841 BX005332.1 non-coding upstream 602591 29128202 ~ 29138004 (-)
XLOC_002843 NA non-coding upstream 740659 29266270 ~ 29491087 (-)
XLOC_002845 CU861448.1 non-coding upstream 1182457 29708068 ~ 29708182 (-)

Expression


Co-expression Network