lrrc34 (lrrc34)


Basic Information

Item Value
gene id lrrc34
gene name lrrc34
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 16343328 ~ 16355927 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620336.2
TTTACAAGCGCGAGGGGGCGCCTGTGTTGCCATAGGAATGTAAACATTTCCTTGTCCTCTGGCCTTGACTGGTGTTTTGGCTTTCATAGCTAGCCTAAAGTTTCGCTACTATGGGAAGTATTACAGATGTTTACTCCTCTGTCTGCAAAGAACTAAAACTACGAACTAATCGATACATTTTAGAAGTCCTGCAAGAGACGGAGGGGAAGACGGGAGACATCACACTCAAACTGACTGGGAACGACAGGCTGAGAAAGGTAGAACAAGTGACCAACAAAGATGCTCTCGCTCTGTCCAGAACCCTCCGAGACAACGACTCAGTGACAGGTCTGGACTTGAGGTACAACTGCATCACAGATGAGGGGGCGGGACACCTCGCTGACCTCCTCAAGGAGAACGTGTGTCTGCGCTTTCTGGACCTGACGTGTAACGACATTCAGACAGACGGAGCTGAATACATTGCAAAGAGTTtgactTCTAATGATGCCCTCCTGTCTCTGAGGCTGACTGGTAATAAGATAGGGAACGGAGGAGCCATGCACTTCGCCAGCATGCTGCAGGTCAACTCTACACTACAGGAGCTGGACGTGGCCGACTCTGACCTGGGGACTCAGAGTGTGATAGCGTTTGCCATCGTCTTGAACAACAACAAGAGCCTCCGATCTGTCAACATCAGCAGACCTCTACTCTTCAGCCACCAGGAGGAGACAGCAGTCCATCTGTCAGGTATGTTGGTAGTTAATCAGTGTCTGAGGGAGCTGCACCTGGGAAAGATGGGCATGACTGACTATGGAGTGGAGAGACTCACTGACGCCCTGAGAACCAACTACACCCTCAAATACCTGGACTTACGCTgTAACCGTGTGACTCGTGACGGGGCGCGGTGTCTAGCAAAGGTCCTGAAGAACAATGGAACCTTGGAGATTCTGGACCTGGCGTCCAATCGCATCGAAGACGATGGTGCCCTCTACCTCAGCCAGGCTATCGCCTTGCCCACCTGCAACCTCAAAGcGTTGTCTATCCCCAATAATAACATAGCTACTGTTGGTCTGGTGTCTCTGTCTCGGGCCATGCAGGCTAacaacactctcacacacatctaCATTTGGGGGAACAGACTGGAGGAGCCGGTCTGTCAGGCTTTCAGTGATCTGCTGTCCAGTGGTCGTCTGTCGTCGGAGCAGAccgatgtgtgtgtgtacgaggtggacgggtgtgtgtgtctggctgagGTCTTCCATGGGCTGAAGAGGCACTACTACTGGACACCCAGCTACGGACAGGATGTAAATCCTGCTAGCAATGCAGCTGTGGCCCTCACAAATACACAACTCTATCCTAACTCCTCACACACACCCTAAACCCTTAATAATACTACCCACCTGGCGCACATTCAGTTAAACTTGATGCATACATGCACTCTAATAAATATCTAATAAACTGTTTTAAGTAA
>XM_021620338.2
TTTACAAGCGCGAGGGGGCGCCTGTGTTGCCATAGGAATGTAAACATTTCCTTGTCCTCTGGCCTTGACTGGTGTTTTGGCTTTCATAGCTAGCCTAAAGTTTCGCTACTATGGGAAGTATTACAGATGTTTACTCCTCTGTCTGCAAAGAACTAAAACTACGAACTAATCGATACATTTTAGAAGTCCTGCAAGAGACGGAGGGGAAGACGGGAGACATCACACTCAAACTGACTGGGAACGACAGGCTGAGAAAGGTAGAACAAGTGACCAACAAAGATGCTCTCGCTCTGTCCAGAACCCTCCGAGACAACGACTCAGTGACAGGTCTGGACTTGAGGTACAACTGCATCACAGATGAGGGGGCGGGACACCTCGCTGACCTCCTCAAGTCTAATGATGCCCTCCTGTCTCTGAGGCTGACTGGTAATAAGATAGGGAACGGAGGAGCCATGCACTTCGCCAGCATGCTGCAGGTCAACTCTACACTACAGGAGCTGGACGTGGCCGACTCTGACCTGGGGACTCAGAGTGTGATAGCGTTTGCCATCGTCTTGAACAACAACAAGAGCCTCCGATCTGTCAACATCAGCAGACCTCTACTCTTCAGCCACCAGGAGGAGACAGCAGTCCATCTGTCAGGTATGTTGGTAGTTAATCAGTGTCTGAGGGAGCTGCACCTGGGAAAGATGGGCATGACTGACTATGGAGTGGAGAGACTCACTGACGCCCTGAGAACCAACTACACCCTCAAATACCTGGACTTACGCTgTAACCGTGTGACTCGTGACGGGGCGCGGTGTCTAGCAAAGGTCCTGAAGAACAATGGAACCTTGGAGATTCTGGACCTGGCGTCCAATCGCATCGAAGACGATGGTGCCCTCTACCTCAGCCAGGCTATCGCCTTGCCCACCTGCAACCTCAAAGcGTTGTCTATCCCCAATAATAACATAGCTACTGTTGGTCTGGTGTCTCTGTCTCGGGCCATGCAGGCTAacaacactctcacacacatctaCATTTGGGGGAACAGACTGGAGGAGCCGGTCTGTCAGGCTTTCAGTGATCTGCTGTCCAGTGGTCGTCTGTCGTCGGAGCAGAccgatgtgtgtgtgtacgaggtggacgggtgtgtgtgtctggctgagGTCTTCCATGGGCTGAAGAGGCACTACTACTGGACACCCAGCTACGGACAGGATGTAAATCCTGCTAGCAATGCAGCTGTGGCCCTCACAAATACACAACTCTATCCTAACTCCTCACACACACCCTAAACCCTTAATAATACTACCCACCTGGCGCACATTCAGTTAAACTTGATGCATACATGCACTCTAATAAATATCTAATAAACTGTTTTAAGTAA

Function

symbol description
lrrc34 Orthologous to human LRRC34 (leucine rich repeat containing 34).

NR:

description
leucine-rich repeat-containing protein 34 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620336.2 False 1453 mRNA 0.51 10 16343328 16355927
XM_021620338.2 True 1369 mRNA 0.51 9 16343328 16355927

Neighbor

gene id symbol gene type direction distance location
LOC110535372 mynn coding upstream 4955 16327393 ~ 16338373 (+)
adipoqa LOC106579495 coding upstream 52584 16288944 ~ 16290744 (+)
tnk2a LOC106579455 coding upstream 68334 16254009 ~ 16274994 (+)
tfr1b LOC106579454 coding upstream 90006 16241581 ~ 16253322 (+)
ccl20b LOC100135878 coding upstream 132136 16209929 ~ 16211192 (+)
klhl15 klhl15 coding downstream 27794 16383721 ~ 16397791 (+)
LOC110535377 LOC106579463 coding downstream 52718 16408645 ~ 16433176 (+)
LOC110535379 LOC106579465 coding downstream 78534 16434461 ~ 16441313 (+)
LOC110516493 LOC106579471 coding downstream 88877 16444804 ~ 16478554 (+)
LOC110535384 EIF1AX coding downstream 141352 16497279 ~ 16513908 (+)
G948638 NA non-coding upstream 20363 16322120 ~ 16322965 (+)
G948627 NA non-coding upstream 34702 16302932 ~ 16308626 (+)
G948629 NA non-coding upstream 41281 16301846 ~ 16302047 (+)
G948630 NA non-coding upstream 43023 16299876 ~ 16300305 (+)
G948626 LOC106579456 non-coding upstream 44151 16298938 ~ 16299177 (+)
G948576 NA non-coding downstream 35439 16391366 ~ 16392176 (+)
G948565 LOC106579466 non-coding downstream 49240 16405167 ~ 16408397 (+)
G948674 NA non-coding downstream 115787 16471714 ~ 16472562 (+)
G948569 NA non-coding downstream 122867 16478794 ~ 16480401 (+)
G948675 NA non-coding downstream 129064 16484991 ~ 16485279 (+)
G948587 NA other upstream 16921 16323350 ~ 16326407 (+)
sh3kbp1 LOC106579452 other upstream 260046 16073315 ~ 16098499 (+)
G948524 NA other upstream 288690 16054065 ~ 16054638 (+)
LOC110535387 LOC106579475 other downstream 187888 16543682 ~ 16565783 (+)
G948710 NA other downstream 198273 16554200 ~ 16601892 (+)
G951511 NA other downstream 2770738 19126665 ~ 19127085 (+)
phldb2b tcpe other downstream 3405338 19740565 ~ 19799150 (+)
tlcd4a LOC106570700 other downstream 6370626 22712577 ~ 22741263 (+)

Expression


Co-expression Network