Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110535375 |
| gene name | LOC106590489 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 16370850 ~ 16381722 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| unnamed protein product, partial |
| id | name | namespace |
|---|---|---|
| GO:0006413 | translational initiation | biological_process |
| GO:0006184 | obsolete GTP catabolic process | biological_process |
| GO:0003924 | GTPase activity | molecular_function |
| GO:0005525 | GTP binding | molecular_function |
| GO:0003743 | translation initiation factor activity | molecular_function |
| id | description |
|---|---|
| K03242 | EIF2S3; translation initiation factor 2 subunit 3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021620341.2 | True | 2158 | mRNA | 0.50 | 11 | 16370850 | 16381722 |
16,360,000
16,362,000
16,364,000
16,366,000
16,368,000
16,370,000
16,372,000
16,374,000
16,376,000
16,378,000
16,380,000
16,382,000
16,384,000
16,386,000
NC_048575.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| lrrc31 | lrrc31 | coding | downstream | 2718 | 16361200 ~ 16368132 (-) |
| otos | LOC106579496 | coding | downstream | 55945 | 16312928 ~ 16314905 (-) |
| cops9 | NA | coding | downstream | 62126 | 16302932 ~ 16308724 (-) |
| and1 | LOC106579456 | coding | downstream | 68061 | 16296309 ~ 16302789 (-) |
| drd3 | LOC106579486 | coding | downstream | 340398 | 15988295 ~ 16040205 (-) |
| LOC110535378 | LOC106579466 | coding | upstream | 23444 | 16405166 ~ 16408591 (-) |
| LOC110535381 | LOC106579472 | coding | upstream | 98688 | 16479705 ~ 16496835 (-) |
| LOC110536562 | LOC106579476 | coding | upstream | 177472 | 16559194 ~ 16566168 (-) |
| LOC118937469 | NA | coding | upstream | 185626 | 16567348 ~ 16571559 (-) |
| LOC110535393 | LOC106579498 | coding | upstream | 405730 | 16787452 ~ 16790203 (-) |
| G949438 | NA | non-coding | downstream | 30359 | 16339347 ~ 16340491 (-) |
| G949437 | NA | non-coding | downstream | 32387 | 16337116 ~ 16338463 (-) |
| G949454 | NA | non-coding | downstream | 40154 | 16330358 ~ 16330696 (-) |
| G949453 | NA | non-coding | downstream | 41475 | 16329098 ~ 16329375 (-) |
| G949451 | NA | non-coding | downstream | 42552 | 16328051 ~ 16328298 (-) |
| G949483 | NA | non-coding | upstream | 10618 | 16392340 ~ 16396474 (-) |
| G949488 | NA | non-coding | upstream | 20555 | 16402277 ~ 16402495 (-) |
| G949491 | NA | non-coding | upstream | 27832 | 16409554 ~ 16409754 (-) |
| G949458 | NA | non-coding | upstream | 50090 | 16431812 ~ 16433150 (-) |
| G949501 | NA | non-coding | upstream | 61023 | 16442745 ~ 16444033 (-) |
| G949426 | NA | other | downstream | 76799 | 16293514 ~ 16294051 (-) |
| G949329 | NA | other | downstream | 320545 | 16049983 ~ 16050305 (-) |
| G949560 | NA | other | upstream | 201753 | 16563634 ~ 16636989 (-) |
| tnfrsf11a | tnfrsf11a | other | upstream | 1485127 | 17858123 ~ 17879460 (-) |
| LOC110535423 | LOC106578417 | other | upstream | 1668948 | 18050118 ~ 18138989 (-) |
| G950851 | NA | other | upstream | 1773962 | 18155684 ~ 18157247 (-) |
