LOC110535386


Basic Information

Item Value
gene id LOC110535386
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 16525041 ~ 16529852 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475246.2
catatgtgggtccgaccaccattaatcaaatacaAACTTTCTTAATAATTAGGAGTATTTTAGATGATGGCACCTAGCTAGATATTTAGCTAAAactgtttttggggaagaacattgtttgcgtCCATCAGCTAGctggctttttttatgaccagcactgtccaGAAGCTTGGGGAGACGTGTCTGCGCTCGTGCGGCAGCGGCCGGCAGGAATCAGGAGGCATCCAAACACAGGAACAGACACAGGGACAGGAGTGGAGGGAACAGAGATGACCACAGTCACACCCGGTGCTCAGCACGAGAGACCTAGGAGAGTTCCTGTGTGATAAAGAGCAGCAGCTGGAGCGTTTTtcggagggaggaggatggaggagcagaaaaaaagagaggagaggagacaacagtaggaagaggaggagaaggtcagaggtcaaacTACTATGCACCCTCGTTTTTTTTGTCCTCAACGACTCCTTCCAACTCCCCCACACCCTgtttacctctctctcgctctctctctgatttgGGTTGAGTATGGTCTGCCTGTTGGGTTAGATTAGATGTGCTTTAATGGTGAACATCTCAACTGATGATTTGAAATTGATTGGGAGACAGCCCATCATTGCAGACAGACTCTCCCGTTTATGTTAATAGATTAATGATTGGGCGGTCTCTGTGGCTGCACCATGATGTCATCGTTGACGTATCATGTGTCATTTCCTGGAATCAGACAATACATGATATATATCTGTCACACGCACATGGATATGAATATTTGATTATGTGTAGGACCAGATAGAGTTTCCATATGATACAATAGGATGTGATAGGATATGAGGCCAGTTTTAGCCTATAGAATTGATGTTGGTTTATTACTGCAGAATTATCAATTAGATATGCAAACAATATGAGTTAATGTATTGATAAAAAACACTGTTGATTAATCTGTCTCTGGTTATTTaggcgtgtgtgtgttctgctgtaGAACTCTGTCTCTGGttatttaggtgtgtgtgtgttctgctgtaGAACTCTGTCTCTGGttatttaggtgtgtgtgtgttctgctgtaGAACTCTGTGGAGGTTCTATTTTAGTCCTGGCACCGGTCGGGTTCTGGGTTGCCGTAGCGATATTGTCCGCTATCACCTcagatgactctctctctctacctctcctccccctctgcctctttctccctctcccccaccctcggcttccctctatctctctggatCTCTTTatcgctatctctctcttttcttctctc
>TU1081798
ATTAATGATTGGGCGGTCTCTGTGGCTGCACCATGATGTCATCGTTGACGTATCATGTGTCATTTCCTGGAATCAGACAATACATGATATATATCTGTCACACGCACATGGATATGAATATTTGATTATGTGTAGGACCAGATAGAGTTTCCATATGATACAATAGGATGTGATAGGATATGAGGCCAGTTTTAGCCTATAGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475246.2 False 1270 mRNA 0.45 3 16525041 16529852
TU1081798 True 205 lncRNA 0.39 1 16529237 16529441

Neighbor

gene id symbol gene type direction distance location
LOC110535384 EIF1AX coding upstream 11133 16497279 ~ 16513908 (+)
LOC110516493 LOC106579471 coding upstream 46487 16444804 ~ 16478554 (+)
LOC110535379 LOC106579465 coding upstream 83728 16434461 ~ 16441313 (+)
LOC110535377 LOC106579463 coding upstream 91865 16408645 ~ 16433176 (+)
klhl15 klhl15 coding upstream 127250 16383721 ~ 16397791 (+)
LOC110535385 LOC106579474 coding downstream 784 16530636 ~ 16541258 (+)
LOC110535387 LOC106579475 coding downstream 13830 16543682 ~ 16565783 (+)
si:ch73-264p11.1 LOC106579497 coding downstream 65619 16595471 ~ 16606582 (+)
chrnd chrnd coding downstream 91362 16621214 ~ 16632688 (+)
LOC110536563 LOC105022008 coding downstream 142238 16672090 ~ 16683601 (+)
G948685 LOC106579472 non-coding upstream 28257 16496210 ~ 16496784 (+)
G948683 NA non-coding upstream 29222 16495589 ~ 16495819 (+)
G948682 NA non-coding upstream 30159 16494655 ~ 16494882 (+)
G948679 NA non-coding upstream 34358 16490270 ~ 16490683 (+)
G948678 NA non-coding upstream 35042 16489735 ~ 16489999 (+)
G948588 NA non-coding downstream 19404 16549256 ~ 16586210 (+)
G948712 NA non-coding downstream 32167 16562019 ~ 16562899 (+)
G948737 NA non-coding downstream 65541 16595393 ~ 16651296 (+)
G948863 NA non-coding downstream 209097 16738949 ~ 16742665 (+)
LOC110535372 mynn other upstream 189749 16327393 ~ 16338373 (+)
G948587 NA other upstream 198634 16323350 ~ 16326407 (+)
ccl20b LOC100135878 other upstream 314201 16209929 ~ 16211192 (+)
sh3kbp1 LOC106579452 other upstream 441759 16073315 ~ 16098499 (+)
G948524 NA other upstream 470403 16054065 ~ 16054638 (+)
G948710 NA other downstream 24348 16554200 ~ 16601892 (+)
G951511 NA other downstream 2596813 19126665 ~ 19127085 (+)
phldb2b tcpe other downstream 3231413 19740565 ~ 19799150 (+)
tlcd4a LOC106570700 other downstream 6196701 22712577 ~ 22741263 (+)
G948707 NA non-coding upstream 1264 16527757 ~ 16527973 (+)
G948706 NA non-coding upstream 3166 16525872 ~ 16526071 (+)

Expression


Co-expression Network