si:ch73-264p11.1 (LOC106579497)


Basic Information

Item Value
gene id si:ch73-264p11.1
gene name LOC106579497
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 16595471 ~ 16606582 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620365.2
CGCGTTTGAAAGAGGGTCTGTGAGATATTGAAGCTTTGAAgagtgttctctgtctgtgtctgtctctgctctcACTGCAGATTATGGAgagattggttgattgattatcAGAGAGTAACTTTACCAACGCTACCTCTGCTAGCTTCTCTCTGGGGTGaggagacagagaacacagggagaggagaggacaggcgaGAAAGAGAAGAGTGGAGTGAAGAAGCAGGGAAGAGTATCAAAAGAAGAGGTGAGGACTGACTGAGGAGAGTGGGAGGACCAGGCCTGGACTGATACAGGAAGAgcggtagagagggagggtgttGACCCCCTGTTGCCCCGCTGTTGGGATAGTTACAATGGCATCGCCTCCATTGATGTACCACGGGGCAATCAGTAAACTGGACTGTGAGGATCTGCTGGGGAAGAAGGGGAAGGATGGAGCCTACCTCATCAGAGACAGCGAAACAATCCAAGGagccatgtgtctgtgtgtctaTAAAAAGAAGGTGGTGTATACCTACAGAATCCTCCAGACCCACACTGGAAGCTACACCCTGCAGacaGCGTCTGGTGTAGAGGAGAAATTCTTTAAGACGTTAGAGGAGCTGGTCCGCCATTATAAGCGTCGGAGACAGGGATTGGCTCAGCATCTGCGCCACTCAGTCAAGCGGAAGACACTGCTACAACTTCCCGCCCCCAATGTCATCGACGAGGTTCCTGATTATGAAAATGTGGATGCATCAGACTACGTTGTTGTCCTGCCCTCTTGATTCAGCAGCACACCCCTGACCTACATCATCTATGAGCCTGTAAATATCTAGGTGTGGTGCCTGCAGGCaggtttaacatttttttttatcctgatgCCAGGGGCGGATTGGTCATCTTGCTCAAAATGCCAGATGAGCTGGTCAAATGTTAGCCCATAGGGCCTGTCTAATTCATTTTTTTAAGCTAAATTATCATTATCTGGCTAATACTGTAATTGGGGCCTCTAAGGAAAAAAATGGGCtggtgtgttagaaatgccagggCTGATTTTTGGTCTCAGTCCTCCCCTTCCTTATGCAATGTGTTGTGTGCTGTTCTGTGTGCTAGGGATACTGAGATTGTCAGAGAGAATAGTGTTTGTCTGGTTGTTGAAGTGGAagttaaaatcaaattttatttgtcacatgcatggAATACAACGTGTGTAgacttactgtgaaatgcttgcttacgagccctttcctACTATGCTgagtcaaaaaatatatatatatttatatactataAAATATATAGTAACACAAGAGGAAGAAAAAAACAAGAATGAAGCTATatcataaaaataatattttggtgggtgcttatatttgtcctgtctTACACATCTACAGGTGTGTATTAAtacgcatgtgtgaattggaaattaGTTTTTTGCATAATCCACTCTCCCGGAGACACCTTCAGAGAGTGGGgtaacagggagtaccagtatcagtaccatatcaatgtgtaGAAGTACGAGGtttttgaggtagatatgtacataaaggcagcgtaaagtgactaggcatcgggatagataataataagagtgaaataaagaacagagcagcatatgtgtgtgtgtggcgtcagtatgcgTGTATGTGTTGTGCGAATGTAGCGTATCTAAATGTATGTGGGTTTGTGAGAGAGTCAGTGTATGTATAATATGTATATATCATCTTGTGAGTGAATAGTATCAGTGCACATACGGTTTGAAACATCCCATAGAAACATTAATATATTTTTGTTACTATGGCATTCCGAATAGAGTTTATTTACTTGTAAAGATTTAGGCCTACTCTGGATAAGACTAAGCTGTAATGTGTAAATGTTCCTAGCTTAAATAAAAAGTTTGTAAACACCAGTATTTATCTACTTTTCCCCTAACTAAATTAAAATGCTGTTATGTAACATGTAACCAACTGTGTGTTGTTGTAACATAAACCCCCCC

Function

NR:

description
SH2 domain-containing protein 1B-like

GO: NA

KEGG:

id description
K07989 SH2D1B, EAT2; SH2 domain-containing protein 1B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620365.2 True 1984 mRNA 0.42 4 16595471 16606582

Neighbor

gene id symbol gene type direction distance location
LOC110535387 LOC106579475 coding upstream 29688 16543682 ~ 16565783 (+)
LOC110535385 LOC106579474 coding upstream 54213 16530636 ~ 16541258 (+)
LOC110535386 NA coding upstream 65619 16525041 ~ 16529852 (+)
LOC110535384 EIF1AX coding upstream 81563 16497279 ~ 16513908 (+)
LOC110516493 LOC106579471 coding upstream 116917 16444804 ~ 16478554 (+)
chrnd chrnd coding downstream 14632 16621214 ~ 16632688 (+)
LOC110536563 LOC105022008 coding downstream 65508 16672090 ~ 16683601 (+)
LOC110535391 LOC106579478 coding downstream 85883 16692465 ~ 16719098 (+)
LOC110536564 LOC106590456 coding downstream 112942 16719524 ~ 16760850 (+)
LOC100136266 LOC100136266 coding downstream 157135 16763717 ~ 16785704 (+)
G948588 NA non-coding upstream 9261 16549256 ~ 16586210 (+)
G948712 NA non-coding upstream 32572 16562019 ~ 16562899 (+)
G948707 NA non-coding upstream 67498 16527757 ~ 16527973 (+)
G948863 NA non-coding downstream 132367 16738949 ~ 16742665 (+)
G948864 NA non-coding downstream 133534 16740116 ~ 16744527 (+)
G948865 NA non-coding downstream 140357 16746939 ~ 16748502 (+)
G948868 NA non-coding downstream 143033 16749615 ~ 16750464 (+)
G948883 NA non-coding downstream 189860 16796442 ~ 16796686 (+)
LOC110535372 mynn other upstream 260179 16327393 ~ 16338373 (+)
G948587 NA other upstream 269064 16323350 ~ 16326407 (+)
ccl20b LOC100135878 other upstream 384631 16209929 ~ 16211192 (+)
sh3kbp1 LOC106579452 other upstream 512189 16073315 ~ 16098499 (+)
G951511 NA other downstream 2520083 19126665 ~ 19127085 (+)
phldb2b tcpe other downstream 3154683 19740565 ~ 19799150 (+)
tlcd4a LOC106570700 other downstream 6119971 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 7058706 23665288 ~ 23665930 (+)
G956797 NA other downstream 7169190 23775772 ~ 23776845 (+)

Expression


Co-expression Network