chrnd (chrnd)


Basic Information

Item Value
gene id chrnd
gene name chrnd
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 16621214 ~ 16632688 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620366.2
TCCCGCCACTCACGGCTCCGGGGGTCACGTCACGAGCACAAGGAGAGAATGGATAACTTTTTTTAAGTTCCAGAGTCTGTCCGGTGTCGAACAGCCATGAACCACCGTTTATTGGGACCGGGAGCCCTGGTTCTGTTCGCAGTCCTTGTAACAGagtgtttGGCCAGGAATGAGGAAGAGCGGTTGATTCAACATCTGTTCAAGGAGAAGGCTTACAACAAGGACCTCCGGCCCGTAGAAAAACAGGACGAAGCTGTCGTTGTGTACATCGCCCTCACACTCTCTAACCTCATCTCTCTGaAAGAGGTAACCGAGACTCTGCTGACCAATGTGTGGATGGAACATGGCTGGTATGACACCAGGCTGTCATGGAACACCGCTGAGTTTGACGATATCGATGTCCTGCGCCTCCCGCCCAGCATGGTGTGGCTGCCGGAGATCGTCCTAGAGAACAATAACGATGCCCAGTTCCAGGTGGCGTACTACTGTAACGTATTGATCAATCCGGAAGGCTATGTGTACTGGCTGCCGCCAGCCATCTTCAGATCCTCCTGTGCCATCAACGTCAACTACTTCCCCTTCGACTGGCAGAACTGCACTCTCAAGTTCACCTCCCTGACCTACAATGCTAAGGAGATCACCATGCAGCTGAAAGAGGAGCTGGAAGATGACAAGTCCTACAAGGTGGAGTGGATCATCATAGACCCTGCAGGgttcacagagaatggagagtgggaaatcattcataaaccggCCCGTAGGAACACCTATAAGAATATCCCTATAGAGAGCAACAAGCACCAGGACATCACCTTCTATCTCATCATCAAACGCAAACCTCTGTTCTATATCGTCAACATCATAATCCCCTCTGTCCTCATCTCCTTCATGGCTACACTGGTCTACTACTTACCAGCTGACAgtgggGAGAAGATGACTCTGTCCATCTCGGTGCTGCTGGCTCAGTCTGTGTTCCTGCTGCTGATCtcacagagactgccagagaccTCCATGGCTATACCACTTATTGTCAAGTATCTGATGTTCATCATGGTTCTGGTTACGGTGGTGGTGTTGCACTGTGTGGTGGTCCTCAACCTGCACTTCAGGAGCCCCAGTACACACATCATGACAGAGTGGACTAGAGAGTTCTTCCTGGAGAGGTTGCCCCGCCTGCTGCGGATGTCCCGCCCTGCAGAGTCAGAGTCTAGCTGGGAGGGGGCGTTGCCAAGGCGATCTAGCTCGGTTGGTTACATTGCTAAGGCGGAAGAGTACTACAGTGTGAAGTCACGCAGCGAGCTGATGTTTGAGAAACAGTCTGAGAGACATGGGCTGGCCACACGGGCTACACCTGCGGCAGCTGTGAAGCCCCAGTCAGATGGAGAGGTGACAGAGCAGCTGTACTCTGAGATGAAGCCTGGTGTGGATGGAGCCAACTACATTGTCAAACACATGCATGACAAGAATGACTACAACGAGGAGAAGGATAACTGGAGTGGTATAGCTCGTACGGTGGACCGTCTGTGTCTGTTCCTGGTCACCCCAGTCATGACAGCAGGCACCATCGTCATCTTCCTCATGGGTATCTACAACCACCCTCCGCCCCTGCCCTTCGAGGGAGACCCCTACAACTACCTGGAGGAGAACAAGCGCTACGTCTGATACACACCAACGCTTACACACGTTCGCACACATGTGAAGTGTGGTTCTGCTGTTTGTTCACCTTCACCTTCACTAACACATCCGCAACCgcccaaatataaaatatgaggcCTGCCCCCGACCCTAACCCACAAATATAGAAAATGCACTGTGGGCCTACAGTCAGATGGCAGAACTATTTTTGGACAGGCCTTTGTATATAGGCCTATGTTTCTGCTTATCATTTCCAACATTTTGGTAGgttatttgttagtcaacttgtttGTAATTAGATAGGCCTAAATGTAGCTCCTCTACTGTCATTACTAGTTGACCTAGAACACTAAGTAATCCCTTAACCAAAATGTAATTAATCCATAGAATTAATGTTTCAGTCAACTTGACATCGGTAAAGTTTGTTTTCTCTTTCATCTCTGCTTCTTTTGCAGCAAAGACATGTAGGGCCCGGGCAAAAATtctataacaaaaaaaaaactgggaaagatttttttgcaaaatttccaaatgacatcagtttgaccggtttttagaaatgtaaaaGCTATTAAAAAGACCCAACATGTTTTTGATAAGATTTAA

Function

symbol description
chrnd Enables acetylcholine-gated cation-selective channel activity. Acts upstream of or within myofibril assembly. Located in plasma membrane. Is expressed in musculature system and somite. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 3A; congenital myasthenic syndrome 3B; and congenital myasthenic syndrome 3C. Orthologous to human CHRND (cholinergic receptor nicotinic delta subunit).

NR:

description
acetylcholine receptor subunit delta

GO: NA

KEGG:

id description
K04816 CHRND; nicotinic acetylcholine receptor delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620366.2 True 2241 mRNA 0.49 12 16621214 16632688

Neighbor

gene id symbol gene type direction distance location
si:ch73-264p11.1 LOC106579497 coding upstream 14632 16595471 ~ 16606582 (+)
LOC110535387 LOC106579475 coding upstream 55431 16543682 ~ 16565783 (+)
LOC110535385 LOC106579474 coding upstream 79956 16530636 ~ 16541258 (+)
LOC110535386 NA coding upstream 91362 16525041 ~ 16529852 (+)
LOC110535384 EIF1AX coding upstream 107306 16497279 ~ 16513908 (+)
LOC110536563 LOC105022008 coding downstream 39402 16672090 ~ 16683601 (+)
LOC110535391 LOC106579478 coding downstream 59777 16692465 ~ 16719098 (+)
LOC110536564 LOC106590456 coding downstream 86836 16719524 ~ 16760850 (+)
LOC100136266 LOC100136266 coding downstream 131029 16763717 ~ 16785704 (+)
LOC110535395 msl2 coding downstream 193297 16825985 ~ 16832892 (+)
G948588 NA non-coding upstream 35004 16549256 ~ 16586210 (+)
G948712 NA non-coding upstream 58315 16562019 ~ 16562899 (+)
G948707 NA non-coding upstream 93241 16527757 ~ 16527973 (+)
G948863 NA non-coding downstream 106261 16738949 ~ 16742665 (+)
G948864 NA non-coding downstream 107428 16740116 ~ 16744527 (+)
G948865 NA non-coding downstream 114251 16746939 ~ 16748502 (+)
G948868 NA non-coding downstream 116927 16749615 ~ 16750464 (+)
G948883 NA non-coding downstream 163754 16796442 ~ 16796686 (+)
G948710 NA other upstream 19322 16554200 ~ 16601892 (+)
LOC110535372 mynn other upstream 285922 16327393 ~ 16338373 (+)
G948587 NA other upstream 294807 16323350 ~ 16326407 (+)
ccl20b LOC100135878 other upstream 410374 16209929 ~ 16211192 (+)
G951511 NA other downstream 2493977 19126665 ~ 19127085 (+)
phldb2b tcpe other downstream 3128577 19740565 ~ 19799150 (+)
tlcd4a LOC106570700 other downstream 6093865 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 7032600 23665288 ~ 23665930 (+)
G956797 NA other downstream 7143084 23775772 ~ 23776845 (+)

Expression


Co-expression Network