LOC100136266 (LOC100136266)


Basic Information

Item Value
gene id LOC100136266
gene name LOC100136266
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 16763717 ~ 16785704 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124527.2
ATCAAACCGACCTCCGCCTCACTTCTGATAGCTGCCCTCGGAGCTTTCTGTGGCTCCGACTGACTCCCCACCTTTCCAGCATTCTCTTTCTATTTCATAGTctccctgtttttctctctctccctctttctctccataccAGTACAAACAGCTTTCGGTACGATTTTAACGGACACCTCGTGGAACGTTTTTCAATCACAAGCTGTGATTATTTTCTTCACCAACACCAATTGACTGATGACCATTATTAATGTGTACTTTTTTCGGTGTCTGATGACTTATTGATTTTTCTGGGTTAAATATTATGCGGGCTCTGCCCTCGAGCTGCGCCCTGAGAGGGACCCCATGAGTTCCGCTAAGTGTGACAAGACCCCACGGTGCGCTTGGACATTTCGGAGTACTACTTGCTCGTGCGCGGCCTGCAACCATGGAGCGGTCACGGGTCGGTCTGCTGTTCCTCGCACTCTGCCTTTTACGTGTGAAAGTCAGCGGGAGAAATCCCACGTGTCACTTCCTCTGGGAGCTGCAGAGGGCAGAGCTAGTATGTCACTATGAGCTGAAGAAACAATCCATGGAGCCTGCAGgctgtggtGGCCTATGGGACAACATTTCGTGTTGGGCCCCAGCAGCAGTAGGGGAGGTGGTGACTCTCTCCTGCCCCCCTGCTCTCACACACCTCTTCGGACGACAAGGCAACATCAGTAGGAACTGTACCGAGGCTGGCTGGTCTGACGTCTACCCCAGCCTCAGCACTGTCTGCTGGTCCAGCGACAACAAACCCAACATGCTGCTGTTCTACTCGGTGGTGAAGACTCTGTACACTCTGGGCCACAGTCTCTCCCTCATCGCTCTCATCACCTCTACACTCATTCTCTGTCTGTTCAggaggCTCCACTGTACTAGGAACTACATCCATGTGAACCTGTTTGTGTCGTTCATCTTGCGAGCTGTGGCCGTGCTGGTAAAAGACTCTGTAATCTTCTCCCATAATGAAAACACTGACTGTAGCACGCAGCCCTCACTGgtgggCTGTAAGGTCAGCTTGGTGATGTTTAACTATTTCATCATGGCTAACTTCTTCTGGCTGCTGGTGGAAGGCCTCTACCTACACACTCTGCTCCTCGTCACCTACGCATACACACACCTCGCTGTCTACCTCACCATCGGCTgggGGTTACCCTCAGTATTTCTTGTGGTCTGGGTCTTCTGTAGGATCTATCTGGAAGACACCGGgtgctggGAGAGGAATGACATCCCCACCCCTTGGAGGGTGATCAACTGGCCCATAATGGCGTCTGTGATAATCAACTTTGTTCTTTTTATAAGTATCATCCGTATTCTAGTCCAGAAACTACGCTGCTCTGACGTGGGCGGGAACGACCAGTCACAATACAGGCGTCTGGCTAAGTCCACCCTGCTGTTGATTCCTCTCTTTGGAGTCAACTACATGGTGTTTGTCTACCTGGTGGAAACAGAGAGCGACGGGATGGAGGAGTACAAGATTCTGTTTGACCTGGTACTGGGGTCCTTCCAGGGCCTGATGGTAGCCATCCTCTACTGCTTCCTCAATACTGAGgtccaGGGGGAGCTGAAGTTGAAGTGGAGGAGTGTGTCGTTGAAGCGCTACATGTGGAGGGACTACCGTCTACACAGGGGGTCAATCAGCCATAACGGGACTGATAACTCCACCCACTTCCAGCGGAACTCCAGAGCCCAATCCATCCTGCAGACAGAGACCACCTCACTGTGACACGACAGTAGTTCCAGCTGTGTAACCCCAGACTTGGGTCTAACTCTTTCTTTGACCCCGAAAGTAGATCTGGGTTCAATCAACCAGTCAATCAAACAATACAAGTTGAGGTGAAACTGAAAAGCGGAACATTTGTAACAGAGATAGAGATATTTCAAGATATTTGCTTGTTTGATAAACAGATTAACTTTTA

Function

NR:

description
vasoactive intestinal polypeptide receptor type 2 precursor

GO:

id name namespace
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004999 vasoactive intestinal polypeptide receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124527.2 True 1943 mRNA 0.51 13 16763717 16785704

Neighbor

gene id symbol gene type direction distance location
LOC110536564 LOC106590456 coding upstream 2867 16719524 ~ 16760850 (+)
LOC110535391 LOC106579478 coding upstream 44619 16692465 ~ 16719098 (+)
LOC110536563 LOC105022008 coding upstream 80116 16672090 ~ 16683601 (+)
chrnd chrnd coding upstream 131029 16621214 ~ 16632688 (+)
si:ch73-264p11.1 LOC106579497 coding upstream 157135 16595471 ~ 16606582 (+)
LOC110535395 msl2 coding downstream 40281 16825985 ~ 16832892 (+)
LOC110535397 pld1 coding downstream 80963 16866667 ~ 16895512 (+)
LOC110536565 LOC106578374 coding downstream 116661 16902365 ~ 16957064 (+)
LOC110535399 LOC106590523 coding downstream 175983 16961687 ~ 16976531 (+)
LOC118937438 NA coding downstream 210257 16995961 ~ 16997111 (+)
G948868 NA non-coding upstream 13253 16749615 ~ 16750464 (+)
G948865 NA non-coding upstream 15215 16746939 ~ 16748502 (+)
G948864 NA non-coding upstream 19190 16740116 ~ 16744527 (+)
G948863 NA non-coding upstream 21052 16738949 ~ 16742665 (+)
G948737 NA non-coding upstream 112421 16595393 ~ 16651296 (+)
G948883 NA non-coding downstream 10738 16796442 ~ 16796686 (+)
G948904 NA non-coding downstream 60750 16846454 ~ 16846732 (+)
G948798 NA non-coding downstream 109828 16895532 ~ 16896521 (+)
G948814 NA non-coding downstream 172488 16958192 ~ 17158652 (+)
G948953 NA non-coding downstream 186847 16972551 ~ 16973050 (+)
G948710 NA other upstream 161825 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 218428 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 428425 16327393 ~ 16338373 (+)
G948587 NA other upstream 437310 16323350 ~ 16326407 (+)
ccl20b LOC100135878 other upstream 552877 16209929 ~ 16211192 (+)
G951511 NA other downstream 2340961 19126665 ~ 19127085 (+)
phldb2b tcpe other downstream 2975561 19740565 ~ 19799150 (+)
tlcd4a LOC106570700 other downstream 5940849 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 6879584 23665288 ~ 23665930 (+)
G956797 NA other downstream 6990068 23775772 ~ 23776845 (+)

Expression


Co-expression Network