LOC118937438


Basic Information

Item Value
gene id LOC118937438
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 16995961 ~ 16997111 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034788.1
aagatgctctcaatggtgcagctgtttaactttttgaggatccgagggcccatgtcaaatcttttcagcctcctgagggggaagaggcgttgtttTGCCCTCTTGACATCTGTGTTGGTGTATGGGTACCGTGATcaatccttagtgatgtggacactgtgGAACTttaagctctcgacctgctccactacagcttgTCGACGTGAAtgagggcgtgctcggccctACGTTTTCTGTAGTCCATgattagctcctttgtcttgctgacgttgagggagagaatCATTAGCTGAAGCAGAAGAAACAGACTGTGGTCAATAGCGCCAAGAAGGGGGTTCACACTGGACCTGACCCACCCTGTGGAGTACAGCATCCTGGACTCTGCCAACTTCGGTTCTTTTCCCTAGTCACTGCTCTTTCCAACATGAAACCTTTCTCAACGAGAGGGTAAAGGTCAATGGCAAGACAGGAAATCTGGCAAATGTAGTCGAGATCAACCTTCTGAAAAACAAGATCCACGTCACAGAACCAGCTTTCCAAGAGGTACCTGAAGAAGAACAACCTCCGTGATTGGTTGAGAGTCGTGTTGTCAGACAAGGAGACTTACGAGCTTAGATACTTCCAGATCAGCCAGGAAGAGGACAATGACGAGTAGAGCCAAGCTCCGCCCACCTGCCCCAGCATGCAGGACTGGAGACTGGCCAGTCCGTCACACTTGTCACTTGTTTGTGAGGGAAAGTCTTCTGTGAGAGACATTTGTATTTGTCAGTGGATAGACTGTAAACTTCAGTGTGTCATCAAGTCTCTAGTTTTGATGGGAGAATAAATTAGA

Function

NR:

description
PREDICTED: 60S ribosomal protein L22-like 1

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034788.1 True 832 mRNA 0.48 3 16995961 16997111

Neighbor

gene id symbol gene type direction distance location
LOC110535399 LOC106590523 coding upstream 19430 16961687 ~ 16976531 (+)
LOC110536565 LOC106578374 coding upstream 38897 16902365 ~ 16957064 (+)
LOC110535397 pld1 coding upstream 100449 16866667 ~ 16895512 (+)
LOC110535395 msl2 coding upstream 163069 16825985 ~ 16832892 (+)
LOC100136266 LOC100136266 coding upstream 210257 16763717 ~ 16785704 (+)
pip4k2aa LOC106578380 coding downstream 68773 17065884 ~ 17108912 (+)
mllt10 mllt10 coding downstream 131316 17128427 ~ 17211793 (+)
bmi1a LOC106578384 coding downstream 257544 17254655 ~ 17271169 (+)
spag6 spag6 coding downstream 284296 17281407 ~ 17285569 (+)
LOC110536567 pkd1l1 coding downstream 292511 17289622 ~ 17342631 (+)
G948953 NA non-coding upstream 22911 16972551 ~ 16973050 (+)
G948798 NA non-coding upstream 99440 16895532 ~ 16896521 (+)
G948904 NA non-coding upstream 149229 16846454 ~ 16846732 (+)
G948883 NA non-coding upstream 199275 16796442 ~ 16796686 (+)
G948868 NA non-coding upstream 245497 16749615 ~ 16750464 (+)
G948797 NA non-coding downstream 37050 17034161 ~ 17035973 (+)
G948793 NA non-coding downstream 39560 17036671 ~ 17042940 (+)
G949033 NA non-coding downstream 219530 17216641 ~ 17216871 (+)
G949042 NA non-coding downstream 233025 17230136 ~ 17230431 (+)
G949044 NA non-coding downstream 235690 17232801 ~ 17233502 (+)
G948710 NA other upstream 394069 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 450672 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 660669 16327393 ~ 16338373 (+)
G948587 NA other upstream 669554 16323350 ~ 16326407 (+)
ccl20b LOC100135878 other upstream 785121 16209929 ~ 16211192 (+)
G951511 NA other downstream 2129554 19126665 ~ 19127085 (+)
phldb2b tcpe other downstream 2764154 19740565 ~ 19799150 (+)
tlcd4a LOC106570700 other downstream 5729442 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 6668177 23665288 ~ 23665930 (+)
G956797 NA other downstream 6778661 23775772 ~ 23776845 (+)

Expression


Co-expression Network