XLOC_028354


Basic Information

Item Value
gene id XLOC_028354
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 6163 ~ 12340 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057303
ACTGCAGCCACGAGATGGCCGCGTGGATCCTCAAACAGgcTCTTTCAATGGGAATGGTGACAGAATATTATCATTACATCTTTACAACACTGgatctGTTTGCTCTGGATATGGAGCCGTATCGCTTCAGCGGCGTCAACATGACCGGTTTCCGCATTTTGAACACGGAGAGTCCGCAGGTTTCCTCCATCATTGAGAAATGGTCAATGGAGAGACTGCAGGCGCCACCCAAACCAGACTCCGGCCTACTGGACGGCTTCATGACG

Function

GO:

id name namespace
GO:0042391 regulation of membrane potential biological_process
GO:0050877 nervous system process biological_process
GO:0051179 localization biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0051234 establishment of localization biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0055085 transmembrane transport biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0015698 inorganic anion transport biological_process
GO:0006810 transport biological_process
GO:0006811 ion transport biological_process
GO:0006820 anion transport biological_process
GO:0006821 chloride transport biological_process
GO:0031224 intrinsic component of membrane cellular_component
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0043005 neuron projection cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0071944 cell periphery cellular_component
GO:1902710 GABA receptor complex cellular_component
GO:1902711 GABA-A receptor complex cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:1902495 transmembrane transporter complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0022803 passive transmembrane transporter activity molecular_function
GO:0022836 gated channel activity molecular_function
GO:0022839 ion gated channel activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0015267 channel activity molecular_function
GO:0008509 anion transmembrane transporter activity molecular_function
GO:0004890 GABA-A receptor activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005253 anion channel activity molecular_function
GO:0005254 chloride channel activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015103 inorganic anion transmembrane transporter activity molecular_function
GO:0015108 chloride transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057303 True 266 lncRNA 0.52 3 6163 12340

Neighbor

gene id symbol gene type direction distance location
XLOC_028355 ptpn12 coding upstream 4968 17308 ~ 18211 (-)
XLOC_028356 CU856344.1 coding upstream 36179 48519 ~ 53370 (-)
XLOC_028357 NA coding upstream 43685 56025 ~ 64703 (-)
XLOC_028358 NA coding upstream 59123 71463 ~ 72658 (-)
XLOC_028359 NA coding upstream 61090 73430 ~ 74608 (-)
XLOC_028360 NA non-coding upstream 87651 99991 ~ 101377 (-)
XLOC_028362 NA non-coding upstream 103982 116322 ~ 119194 (-)

Expression


Co-expression Network