spag6 (spag6)


Basic Information

Item Value
gene id spag6
gene name spag6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 17281407 ~ 17285569 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935085.1
CAGTAACATGCGAACCCAAACTTGAGGCTGCGGGAGTTAGATGCTGCACGGCACTGTTTACTGCTGCTTTTCATGGAAAACTCACATATTTATTAGACATTTATTAGAAAAGTggagttctttaaaaaaaaaatatctaattGTAATCATGAGTCAACGACAGGTTTTACAAGTGTTTGAGCAGTATCAGAAATCAAGGGCACAGTTTGTGCAGACTATTGCTGAGCTTGCCACAAGACCACAAAACATTGAAACTTTACAAAATGCTGGTGTGATGTCCCTGCTGAGGCCTTTACTGCTAGACGTGGTTCCTACCATCCAGCAGACAACTGCTCTGGCTCTAGGACGACTGGCCAACTACAATGACGACCTGGCAGTGGCCGTCGTCAAGGGAGACATCCTCCCACAGCTCGTCTACTCCCTGACCGAGCAGAACaggttcTATAAGAAGGCAGCAGCGTTTGTCCTGCGTGCGGTGGCCAAGCACAGCCCTGCTCTGGCCCAGGCCGTGGTGGACTGTGGAGCGCTGGACGCTCTGGTCATCTCTCTGGAAGAGTTTGACCCTGGGGTCAAGGAGGCTGCTGCTTGGGCTCTGGGATACATTGCACGCCACAATGCACACCTGTCTCAGGCGGTAGTGGATGCGGGGGCCGTTCCTCTGCTGGTGCTGTGTATCCAGGAACCAGAGGTTGCCCTGAAACGCATCGCTGCCTCGGCCCTTAGCGACATCGCCAAGCACTCCCCTGAGCTAGCTCAGACTGTGGTCGACACCGGCGCCATCGCACACCTGGCCCAGATGATCCTCAACCCTGATGCCAAACTGAAGaggcaggtgttctCTGCCCTGAGTCAGATCAGTAAGCACTCGGTGGACCTGGCTGAGATGGTGGTGGAGGCAGAGATCTTCCCTGCTGTCCTGGCCTGCCTCCGAGACCCAGATGAGTACGTCAGGAAGAATGTTACCACACTGATGAGAGAGATCACCAAACACACacctgagctgtCTCTGATGATCGTGAATGCGGGTGGTGTGGCGGCGGTGATTGACTACCTGGGTGATAGCCGTGGTAACGTGCGGTTACCTGGGATCATGATGCTTGGATATGTGGCCGCTCACTCTGAAAACCTTGCCATGGCCGTCATCGTgtctaagGGGGTGCCCCAGCTGgccatctgtctgtctgaggaGCCAGAGGAGCACATCAAGGCGGCCACAGCGTGGGCGTTTGGCCAGATCGGCCGCCACACCCCGGAACATGCTAGGGCCGTGTCCACAGCTAACGTCCTGCCCAAGCTGCTGGCCCTCTACATGGACACGGACAGCTCAGAGGACCTGCAGGTCAAGGCTAAGAAGGCTCTGAAGAGCATCCTACAGAAGTGCACCTATCTGCCTGCTCTGGAGCCCCTGCTCTACGAAGCTCCCAGCAACATCCTGAAACATGTTGTCTGCCAGTTCAGCAAGgtGCTGCCCCATGACAGCAAGGCTCGTCGTCTGTTTGTAACCAGCGGAGGCCTGAAGAAGGTTCAGGAAATTAAGGCTGATCCTGGATCTGCCCTGCAGGAGTACATCAACTCTATCAACAACTGTTACCCTGAGGAGAtagtcagGTACTACTCCCCTGGCTACTCAGAGACTCTGCTGGCGCGGGTAGAGAAGTACCAGCCTGTTTGAGGGTCTTAGCCCAGCTTACTGGGGGTTACGGGCTCACATACCTCTATTACTGACGATTTCACCCCCGACCATGAATATGAGGACAGCAGACCTATATAAAACAATCTCTTATTATTGCAGTGATTAtgttgtctgtctttgtctcaaTGGCCAGTACATTATCACATGGACTGTATATGCATTGTCATAGCTGTGTAGGTCTGTGTTAGCATTTGTTAAGAGGAATTGCATCATTAACCTGCTCAACAGTGTACTCTGTATGCCTAAACAAGTCACTTATTAGTATTGAACCATTGTATATGCAGCTAATATTCATaggtttattttatatttataggATATATGATTATTTCCACTGGAAATGTAATGTTGTGTGCATTATTGCTTTTCATCCAGCATGCAGGTctttcaaaaaataaaataaacattataGTAAATGAAACATAACAAGCCTAACACCATAAATATTTTTAATTAAAACAGGACAGTGAAAATAAAGATGTACTCAGTTTTAGATACGAACTCTGCATTGTTATTTCCA

Function

symbol description
spag6 Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; nervous system; pronephric duct; and spinal cord neural tube. Orthologous to human SPAG6 (sperm associated antigen 6).

NR:

description
sperm-associated antigen 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935085.1 True 2213 mRNA 0.50 11 17281407 17285569

Neighbor

gene id symbol gene type direction distance location
bmi1a LOC106578384 coding upstream 10238 17254655 ~ 17271169 (+)
mllt10 mllt10 coding upstream 69614 17128427 ~ 17211793 (+)
pip4k2aa LOC106578380 coding upstream 172495 17065884 ~ 17108912 (+)
LOC118937438 NA coding upstream 284296 16995961 ~ 16997111 (+)
LOC110535399 LOC106590523 coding upstream 304876 16961687 ~ 16976531 (+)
LOC110536567 pkd1l1 coding downstream 4053 17289622 ~ 17342631 (+)
LOC110535409 LOC106578385 coding downstream 57222 17342791 ~ 17352441 (+)
ezh2 ezh2 coding downstream 71137 17356706 ~ 17369209 (+)
LOC118937326 NA coding downstream 100436 17386005 ~ 17391059 (+)
LOC110535414 NA coding downstream 158699 17444268 ~ 17537220 (+)
G949044 NA non-coding upstream 47905 17232801 ~ 17233502 (+)
G949042 NA non-coding upstream 50976 17230136 ~ 17230431 (+)
G949033 NA non-coding upstream 64536 17216641 ~ 17216871 (+)
G948793 NA non-coding upstream 238467 17036671 ~ 17042940 (+)
G949087 NA non-coding downstream 27482 17313051 ~ 17313273 (+)
G949103 NA non-coding downstream 70449 17356018 ~ 17356404 (+)
G949105 NA non-coding downstream 73568 17359137 ~ 17359378 (+)
G949111 NA non-coding downstream 101566 17387135 ~ 17387367 (+)
G948710 NA other upstream 679515 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 736118 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 946115 16327393 ~ 16338373 (+)
G948587 NA other upstream 955000 16323350 ~ 16326407 (+)
ccl20b LOC100135878 other upstream 1070567 16209929 ~ 16211192 (+)
G951511 NA other downstream 1841096 19126665 ~ 19127085 (+)
phldb2b tcpe other downstream 2475696 19740565 ~ 19799150 (+)
tlcd4a LOC106570700 other downstream 5440984 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 6379719 23665288 ~ 23665930 (+)
G956797 NA other downstream 6490203 23775772 ~ 23776845 (+)

Expression


Co-expression Network