XLOC_028355 (ptpn12)


Basic Information

Item Value
gene id XLOC_028355
gene name ptpn12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 17308 ~ 18211 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055089
AGAATATCAGAAGATTTTAACGTGTTTCAGCTGATTCAGGAGATGAGGACACAGCGGCACTCAGCAGTGCAGACCAAagagcaGTATGAGCTGGTGCATCGAGCCATCGCACAGATCTTCCAGAAACAGCTGAAGCTTTTGGAGAGTCCCACAAACTCAGAGGTCACAGACGGCacgctgCAGGAAGACAGCAGTCCAGAAAAACACACTCCTAACTCAGACGAGGAGCAGTGGGACACACCGCCACCCAAACCTCCCCGTTTGCGCAGTGTTCAGGGTGAGTGTGCGGTACAGGAAGAGATCCTCCAGGCTCCTGAGCCGCGGCCCGTCCCGCCCATCCTCCGCCCGTCTCCAGCCTCTGCTCTGCGCACCGTCAGCTCTGCCCGGCACAGCGACACCTACCACCCCAAACCCCTGCTGTCTGACCCAGAGCCCAGCGACCCAGAGCCCAGCACTCACTTCACTGACCCAGACCATCACTCCAGTGACCCAGAGCCCAGCGAGCCGGAG

Function

symbol description
ptpn12 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in cytoplasm. Is expressed in several structures, including immature eye; nervous system; neural tube; pectoral fin musculature; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in colorectal cancer. Orthologous to human PTPN12 (protein tyrosine phosphatase non-receptor type 12).

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1441 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in cytoplasm. Is expressed in several structures, including immature eye; nervous system; neural tube; pectoral fin musculature; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in colorectal cancer. Orthologous to human PTPN12 (protein tyrosine phosphatase non-receptor type 12).

Ensembl:

ensembl_id ENSDARG00000102141

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055089 True 510 mRNA 0.59 4 17308 18211

Neighbor

gene id symbol gene type direction distance location
XLOC_028354 NA coding downstream 4968 6163 ~ 12340 (-)
XLOC_028356 CU856344.1 coding upstream 30308 48519 ~ 53370 (-)
XLOC_028357 NA coding upstream 37814 56025 ~ 64703 (-)
XLOC_028358 NA coding upstream 53252 71463 ~ 72658 (-)
XLOC_028359 NA coding upstream 55219 73430 ~ 74608 (-)
XLOC_028360 NA coding upstream 81780 99991 ~ 101377 (-)
XLOC_028362 NA non-coding upstream 98111 116322 ~ 119194 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000322_00054750_00060013 PTPN12 coding CI01000322 null 54750 ~ 60013 (-)