LOC110535414


Basic Information

Item Value
gene id LOC110535414
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 17444268 ~ 17537220 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935093.1
ATTTTACTGAAGTGAAAGTAAACTAAAGCAGGGAATTGTACATGGAAACAAAGTCTGCTGCTCGTCACAAGGCTAACAACAACACAGCAGCACAGTGTCCAACATTCAACAAGAAAACAGGAAAACTCCCACACAGACATGGCGTCCCTTAGCAGTCTCTTGTCTGAAGAGCAGATACAGTGCTCTATCTGTCTGGATGTGTTCACTGAGCCAGTCACTACTCCTTGTGGTCACAACTTCTGCAAGGCCTGTATCAGTGGATACTGGAATAAGCCTGGCCTGTGCCAGTGTCCAATGTGTAAGGACATGTTTTACAGAAGACCTGAGCTCAAAATCAACACAACACTCAGAGATGTTGCAGATCATTTTAagaggatgagagacagagatgagtcCCTTGCTAAGCCTGGAGACGTGGCCTGTGATGTCTGCACTGGGAGAAAGCACAAGGCCCTGAAGTCTTGTCTGGAATGTCTGACCGCTTTCTGTGAAACTCACCTGCAGCCTCACAACAGAGTTGCAGGCCTGAAGAGACACAAGCTGATCAACCCTGTGGAGAACCTGCAAGACAGGATGTGTAAGAAGCATGACAGACTCCTGGAACTGTTCTGTAGGACTGACCAGACGTGGGTGTGTACGTTCTGCACTGAGACAGACCACAAGACTCACCTCACCGTCCCGCTAGAGGAAGAGTGTGGACAGAGGAAGGCTCAACTGGAGAAGATTGAGGCAGAAGTTCAGCAGATGATCGAGGAGCGACTGCAGAAGGTTCAGGAGATCAAACACTCAGTAAAATTCAGAAAAAGAGCAGCAGAGCGAGAGATAGCAGAAAGCATGGAGGTCTTCACTGCTCTGGTGCGCTGCATTGAGAGAAGCCAGGCTGAGTTCATTGAGGTGGTTGAGGAGAAGTTGAAAGCAGCAGAGTGGCAGGCTGAAGGGCTCATTAAAGAGCTGGAGCAGGAAatcactgagctacagaggagatGCTCTGAGTTGGAGCAGCTCTTACACACCAaggaccacctccacctcctacaGAGCTCCCCACCCCTCTGTAAGCTTCCTCCCACCAGGAAGTGGCCTCAGAAATATGTCCACAGTCGGCTGTGTCTGGGAAATGTAAGGAGAGTTGTGTATCAACTGGAAGACGCTCTTCACAATGAGATGGAGAAGCTGCCTGACATCAAGCTGAAGAGGATGCAGCAGTATGCAGTGGATGTAACTCTGGACCCTGATACAGCATTTCCATTCCTCATCCTTGGAGGGTTTCTCCTCTGGGAGATTCTACTATGAGGTGCAGGTGACGGGGAAGACATGGTGGTGGCTAGGAGTGGCCAGTGAATccatagacaggaaggagagttTAAACCTGAGCTCTGATGGACTCTGGACTGTGTGGCTGAATGGCGAAAATGGGTATGGAGCC
>XM_021620400.2
ATTTTACTGAAGTGAAAGTAAACTAAAGCAGGGAATTGTACATGGAAACAAAGTCTGCTGCTCGTCACAAGGCTAACAACAACACAGCAGCACAGTGTCCAACATTCAACAAGAAAACAGGAAAACTCCCACACAGACATGGCGTCCCTTAGCAGTCTCTTGTCTGAAGAGCAGATACAGTGCTCTATCTGTCTGGATGTGTTCACTGAGCCAGTCACTACTCCTTGTGGTCACAACTTCTGCAAGGCCTGTATCAGTGGATACTGGAATAAGCCTGGCCTGTGCCAGTGTCCAATGTGTAAGGACATGTTTTACAGAAGACCTGAGCTCAAAATCAACACAACACTCAGAGATGTTGCAGATCATTTTAagaggatgagagacagagatgagtcCCTTGCTAAGCCTGGAGACGTGGCCTGTGATGTCTGCACTGGGAGAAAGCACAAGGCCCTGAAGTCTTGTCTGGAATGTCTGACCGCTTTCTGTGAAACTCACCTGCAGCCTCACAACAGAGTTGCAGGCCTGAAGAGACACAAGCTGATCAACCCTGTGGAGAACCTGCAAGACAGGATGTGTAAGAAGCATGACAGACTCCTGGAACTGTTCTGTAGGACTGACCAGACGTGGGTGTGTACGTTCTGCACTGAGACAGACCACAAGACTCACCTCACCGTCCCGCTAGAGGAAGAGTGTGGACAGAGGAAGGCTCAACTGGAGAAGATTGAGGCAGAAGTTCAGCAGATGATCGAGGAGCGACTGCAGAAGGTTCAGGAGATCAAACACTCAGTAAAATTCAGAAAAAGAGCAGCAGAGCGAGAGATAGCAGAAAGCATGGAGGTCTTCACTGCTCTGGTGCGCTGCATTGAGAGAAGCCAGGCTGAGTTCATTGAGGTGGTTGAGGAGAAGTTGAAAGCAGCAGAGTGGCAGGCTGAAGGGCTCATTAAAGAGCTGGAGCAGGAAatcactgagctacagaggagatGCTCTGAGTTGGAGCAGCTCTTACACACCAaggaccacctccacctcctacaGAGCTCCCCACCCCTCTGTAAGCTTCCTCCCACCAGGAAGTGGCCTCAGAAATATGTCCACAGTCGGCTGTGTCTGGGAAATGTAAGGAGAGTTGTGTATCAACTGGAAGACGCTCTTCACAATGAGATGGAGAAGCTGCCTGACATCAAGCTGAAGAGGATGCAGCAGTATGCAGTGGATGTAACTCTGGACCCTGATACAGCATTTCCATTCCTCATCCTTGGTAAGAAAAATAGGAAACAAGTGAGATGTGGAGACAAGAGTCAAGAGAATCTCACTAATGATCCAAAGAGATTTAAAAATAGTTTCTCTGTCCTGGGTAAGGAGGGTTTCTCCTCTGGGAGATTCTACTATGAGGTGCAGGTGACGGGGAAGACATGGTGGTGGCTAGGAGTGGCCAGTGAATccatagacaggaaggagagttTAAACCTGAGCTCTGATGGACTCTGGACTGTGTGGCTGAATGGCGAAAATGGGTATGGAGCCAACAATTACTACCCTGTCCGCCTCTCCCTGAGAGAGAAGCCCCAGAAGGTGGGGGTGTTTGTGGATTATGAGAAAGGTCAGGTCTCCTTCTATGATGTGAAAGCCAAGTCTCATATCTACTCCTACTATGGATGCAACTTCACCGAGAAACTCTATCCATATTTCAACCCCTATCTTAGCTGTAGTGGTGAAAACTCAGCCCCACTGGTCATCTCCTCTGTCAATCACAAGCAGTGAAACAAGTTGTCACTAAAATGTCAAATACTCAGCTCAGCAGTTGATTAGTTTGGGGTACTACAGATCAATATTGTTGGCTGTGCATCTCAAACTGTATATAGTATGATCAATTACCTCCCAAGGACAAAGGTTTTGAAAATGTTCCCTCTGCATTGCAAGTATTGAGAGCAAGGCTGATGGTTCTAAGTGATGTCAGAATGATGGTCAGATCTAAATTAAAGAGAGATACAAGTCTA
>XM_036935095.1
ATTTTACTGAAGTGAAAGTAAACTAAAGCAGGGAATTGTACATGGAAACAAAGTCTGCTGCTCGTCACAAGGCTAACAACAACACAGCAGCACAGTGTCCAACATTCAACAAGAAAACAGGAAAACTCCCACACAGACATGGCGTCCCTTAGCAGTCTCTTGTCTGAAGAGCAGATACAGTGCTCTATCTGTCTGGATGTGTTCACTGAGCCAGTCACTACTCCTTGTGGTCACAACTTCTGCAAGGCCTGTATCAGTGGATACTGGAATAAGCCTGGCCTGTGCCAGTGTCCAATGTGTAAGGACATGTTTTACAGAAGACCTGAGCTCAAAATCAACACAACACTCAGAGATGTTGCAGATCATTTTAagaggatgagagacagagatgagtcCCTTGCTAAGCCTGGAGACGTGGCCTGTGATGTCTGCACTGGGAGAAAGCACAAGGCCCTGAAGTCTTGTCTGGAATGTCTGACCGCTTTCTGTGAAACTCACCTGCAGCCTCACAACAGAGTTGCAGGCCTGAAGAGACACAAGCTGATCAACCCTGTGGAGAACCTGCAAGACAGGATGTGTAAGAAGCATGACAGACTCCTGGAACTGTTCTGTAGGACTGACCAGACGTGGGTGTGTACGTTCTGCACTGAGACAGACCACAAGACTCACCTCACCGTCCCGCTAGAGGAAGAGTGTGGACAGAGGAAGGCTCAACTGGAGAAGATTGAGGCAGAAGTTCAGCAGATGATCGAGGAGCGACTGCAGAAGGTTCAGGAGATCAAACACTCAGTAAAATTCAGAAAAAGAGCAGCAGAGCGAGAGATAGCAGAAAGCATGGAGGTCTTCACTGCTCTGGTGCGCTGCATTGAGAGAAGCCAGGCTGAGTTCATTGAGGTGGTTGAGGAGAAGTTGAAAGCAGCAGAGTGGCAGGCTGAAGGGCTCATTAAAGAGCTGGAGCAGGAAatcactgagctacagaggagatGCTCTGAGTTGGAGCAGCTCTTACACACCAaggaccacctccacctcctacaGAGCTCCCCACCCCTCTGTAAGCTTCCTCCCACCAGGAAGTGGCCTCAGAAATATGTCCACAGTCGGCTGTGTCTGGGAAATGTAAGGAGAGTTGTGTATCAACTGGAAGACGCTCTTCACAATGAGATGGAGAAGCTGCCTGACATCAAGCTGAAGAGGATGCAGCAGTATGCAGTGGATGTAACTCTGGACCCTGATACAGCATTTCCATTCCTCATCCTTGCTGACTAAACAGCTCTAGCCGTGTATGTCCCTGTGGAGGGGCGGGACGAGCTTCCCTATAGTTCAGATCCAGCTGTAGCACCGCCTCCTTCACGTTCCGCTCTGCCATGACGCGATGCCATTG
>XM_036935094.1
ATTTTACTGAAGTGAAAGTAAACTAAAGCAGGGAATTGTACATGGAAACAAAGTCTGCTGCTCGTCACAAGGCTAACAACAACACAGCAGCACAGTGTCCAACATTCAACAAGAAAACAGGAAAACTCCCACACAGACATGGCGTCCCTTAGCAGTCTCTTGTCTGAAGAGCAGATACAGTGCTCTATCTGTCTGGATGTGTTCACTGAGCCAGTCACTACTCCTTGTGGTCACAACTTCTGCAAGGCCTGTATCAGTGGATACTGGAATAAGCCTGGCCTGTGCCAGTGTCCAATGTGTAAGGACATGTTTTACAGAAGACCTGAGCTCAAAATCAACACAACACTCAGAGATGTTGCAGATCATTTTAagaggatgagagacagagatgagtcCCTTGCTAAGCCTGGAGACGTGGCCTGTGATGTCTGCACTGGGAGAAAGCACAAGGCCCTGAAGTCTTGTCTGGAATGTCTGACCGCTTTCTGTGAAACTCACCTGCAGCCTCACAACAGAGTTGCAGGCCTGAAGAGACACAAGCTGATCAACCCTGTGGAGAACCTGCAAGACAGGATGTGTAAGAAGCATGACAGACTCCTGGAACTGTTCTGTAGGACTGACCAGACGTGGGTGTGTACGTTCTGCACTGAGACAGACCACAAGACTCACCTCACCGTCCCGCTAGAGGAAGAGTGTGGACAGAGGAAGGCTCAACTGGAGAAGATTGAGGCAGAAGTTCAGCAGATGATCGAGGAGCGACTGCAGAAGGTTCAGGAGATCAAACACTCAGTAAAATTCAGAAAAAGAGCAGCAGAGCGAGAGATAGCAGAAAGCATGGAGGTCTTCACTGCTCTGGTGCGCTGCATTGAGAGAAGCCAGGCTGAGTTCATTGAGGTGGTTGAGGAGAAGTTGAAAGCAGCAGAGTGGCAGGCTGAAGGGCTCATTAAAGAGCTGGAGCAGGAAatcactgagctacagaggagatGCTCTGAGTTGGAGCAGCTCTTACACACCAaggaccacctccacctcctacaGAGCTCCCCACCCCTCTGTAAGCTTCCTCCCACCAGGAAGTGGCCTCAGAAATATGTCCACAGTCGGCTGTGTCTGGGAAATGTAAGGAGAGTTGTGTATCAACTGGAAGACGCTCTTCACAATGAGATGGAGAAGCTGCCTGACATCAAGCTGAAGAGGATGCAGCAGTATGCAGTGGATGTAACTCTGGACCCTGATACAGCATTTCCATTCCTCATCCTTGCCTCTCTGCTCTGGGACGGGATGTGATGCTTGGCAAGAGGAGGAGTCCAGTGCTTTTTACAGAGGAGGGCTTATCGCACTGCCCCAGAAGCCGCGCGCACAAGCATAAgtacgcgcaaacacacacacacgcacacttgcCACCTACTGGGCCCGTTTTATTATTTGAAGTCTTTGCTATTTAATTACGATTACCCAGAGGCAGACATGGCTACAGAAAAGGGTTAACTTGGGACCCGATGCaagagactcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagggcctgtCCTGGCTGTTCAGCCGCCCTACGCGAGACAAGCTCCTACAAGAAACAGTCCAAGTAAGCAAAATTACATTGTAAGACgtctaaaatacatatttttccaGATGTTGAAGTTACGTTCAATATTGGTTCTGAATCAAAgacaaaaatacatattttccggGCTTTGAAATCAGGTAAAttttaggttctgaatgaaagttgaaaatagGTCATTTATAGACTATGTTTGTgccaaatcaaggctggtccagacCAGACAAAATCTAAACCAAACAAGATGTCCAATTAGCGTCAGCATCGGTCTGTGCATTTTCATTTGAATGGGCgccatttaggttaggctatttgatcggaGAAACCTGCATGATGTAAAAAATATCTGTCACATTACATTGTCATCCATTTTATCTCCAGTCTGTAGCCTACAGAAAACGCCATATACTCTTTCTACCATATCCTAGATCTGCTACATGATTTATGTTAGATTCTTTTTTTGCCGTAAcattggtggagcgctgcagagatgtgtctctccaacagcaccctggagaggcaCGCTGGGAACGGACAATATCATTATTTTGAGTCCCTGCCAAtgacaaagtgggcactgcttatcaTAGGGCGGCATCAGCACTCACCTAAAAAGCCCATATGCCACTGTttgagagaaattgtcattgtttttggCCAGAATTAATTATGTGAGGTATTATGTGCTGTTGGAGGTACCGCCTTGGTCTGTTTAGCTCAGAGAATGCCGCCCTCGTCGATCTCCCGCCATAAGAAGACCcataatcctgcctaatgagagggCTGGGTcctgcacacacccacacacaaactctTCCAGCTATGACTGAGGGTCGGGTCCTTTGTCCCTACATCATGTGGACATGGTAATGATAGAGTTCGAAAGGGTCAGAAACGATTTATCCTTTCTTTCCTTCAttcttctgttcctctctccttttAAGTGTGCATAATTGAGTTTGATTTTCTACTCCTTTTATGAAAGGCCTCTAATTGTATTGCTCTGTAGGAAAAAAGTTCAAAAGTTGACAAAAGACCCTTAAGGTGATTGACACAAAAGACACAAGTTGAATTGAATATGTGGGCGCGGGTGTGTATGAGCGCGTACACACTCACCCTTACACccacgcacccacgcacacactcacCCTTACACCCACGCACCCTTCCTCACACTCAcccttacacac
>XR_005034595.1
ATTTTACTGAAGTGAAAGTAAACTAAAGCAGGGAATTGTACATGGAAACAAAGTCTGCTGCTCGTCACAAGGCTAACAACAACACAGCAGCACAGTGTCCAACATTCAACAAGAAAACAGGAAAACTCCCACACAGACATGGCGTCCCTTAGCAGTCTCTTGTCTGAAGAGCAGATACAGTGCTCTATCTGTCTGGATGTGTTCACTGAGCCAGTCACTACTCCTTGTGGTCACAACTTCTGCAAGGCCTGTATCAGTGGATACTGGAATAAGCCTGGCCTGTGCCAGTGTCCAATGTGTAAGGACATGTTTTACAGAAGACCTGAGCTCAAAATCAACACAACACTCAGAGATGTTGCAGATCATTTTAagaggatgagagacagagatgagtcCCTTGCTAAGCCTGGAGACGTGGCCTGTGATGTCTGCACTGGGAGAAAGCACAAGGCCCTGAAGTCTTGTCTGGAATGTCTGACCGCTTTCTGTGAAACTCACCTGCAGCCTCACAACAGAGTTGCAGGCCTGAAGAGACACAAGCTGATCAACCCTGTGGAGAACCTGCAAGACAGGATGTGTAAGAAGCATGACAGACTCCTGGAACTGTTCTGTAGGACTGACCAGACGTGGGTGTGTACGTTCTGCACTGAGACAGACCACAAGACTCACCTCACCGTCCCGCTAGAGGAAGAGTGTGGACAGAGGAAGGCTCAACTGGAGAAGATTGAGGCAGAAGTTCAGCAGATGATCGAGGAGCGACTGCAGAAGGTTCAGGAGATCAAACACTCAGTAAAATTCAGAAAAAGAGCAGCAGAGCGAGAGATAGCAGAAAGCATGGAGGTCTTCACTGCTCTGGTGCGCTGCATTGAGAGAAGCCAGGCTGAGTTCATTGAGGTGGTTGAGGAGAAGTTGAAAGCAGCAGAGTGGCAGGCTGAAGGGCTCATTAAAGAGCTGGAGCAGGAAatcactgagctacagaggagatGCTCTGAGTTGGAGCAGCTCTTACACACCAaggaccacctccacctcctacaGAGCTCCCCACCCCTCTGTAAGCTTCCTCCCACCAGGAAGTGGCCTCAGAAATATGTCCACAGTCGGCTGTGTCTGGGAAATGTAAGGAGAGTTGTGTATCAACTGGAAGACGCTCTTCACAATGAGATGGAGAAGCTGCCTGACATCAAGCTGAAGAGGATGCAGCAGTATGCAGTGGATGTAACTCTGGACCCTGATACAGCATTTCCATTCCTCATCCTTGCCTCTCTGCTCTGGGACGGGATGTGATGCTTGGCAAGAGGAGGAGTCCAGTGCTTTTTACAGAGGAGGGCTTATCGCACTGCCCCAGAAGCCGCGCGCACAAGCATAAGTGGTATGTTCCCCCGG

Function

NR:

description
E3 ubiquitin-protein ligase TRIM39-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935093.1 False 1426 mRNA 0.50 3 17444268 17446180
XM_021620400.2 False 2000 mRNA 0.47 2 17444268 17446653
XM_036935095.1 False 1384 mRNA 0.50 3 17444268 17459118
XM_036935094.1 False 2811 mRNA 0.47 3 17444268 17464796
XR_005034595.1 True 1386 mRNA 0.50 4 17444268 17537220

Neighbor

gene id symbol gene type direction distance location
LOC118937326 NA coding upstream 53209 17386005 ~ 17391059 (+)
ezh2 ezh2 coding upstream 75059 17356706 ~ 17369209 (+)
LOC110535409 LOC106578385 coding upstream 91827 17342791 ~ 17352441 (+)
LOC110536567 pkd1l1 coding upstream 101637 17289622 ~ 17342631 (+)
spag6 spag6 coding upstream 158699 17281407 ~ 17285569 (+)
tpk1 NA coding downstream 172467 17709687 ~ 17789321 (+)
pign pign coding downstream 389414 17926634 ~ 17945204 (+)
LOC110535422 LOC106578412 coding downstream 412209 17949429 ~ 17960000 (+)
hnf4g hnf4g coding downstream 422966 17960186 ~ 17981897 (+)
pex2 pex2 coding downstream 655404 18192624 ~ 18204153 (+)
G949120 NA non-coding upstream 40680 17403352 ~ 17403588 (+)
G949111 NA non-coding upstream 56901 17387135 ~ 17387367 (+)
G949105 NA non-coding upstream 84890 17359137 ~ 17359378 (+)
G949103 NA non-coding upstream 87864 17356018 ~ 17356404 (+)
G949255 NA non-coding downstream 97758 17634978 ~ 17636793 (+)
G950188 NA non-coding downstream 132512 17669732 ~ 17669943 (+)
G950225 NA non-coding downstream 152592 17689812 ~ 17690023 (+)
G950246 NA non-coding downstream 171175 17708395 ~ 17708618 (+)
G950317 NA non-coding downstream 292793 17830013 ~ 17830880 (+)
G948710 NA other upstream 842376 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 898979 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 1108976 16327393 ~ 16338373 (+)
G948587 NA other upstream 1117861 16323350 ~ 16326407 (+)
ccl20b LOC100135878 other upstream 1233428 16209929 ~ 16211192 (+)
G951511 NA other downstream 1589445 19126665 ~ 19127085 (+)
phldb2b tcpe other downstream 2224045 19740565 ~ 19799150 (+)
tlcd4a LOC106570700 other downstream 5189333 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 6128068 23665288 ~ 23665930 (+)
G956797 NA other downstream 6238552 23775772 ~ 23776845 (+)

Expression


Co-expression Network