pign (pign)


Basic Information

Item Value
gene id pign
gene name pign
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 17926634 ~ 17945204 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935104.1
GCCAGTTAGAGAGACAGGCCTAGTTAGTGTTGGAACAGCACCATGTATAGCCATCTTTAGCAGCAGCTTACATGATTTCACGATGCAAATATCTCAATTACTACACTATAAAGAAGGTGCCAGGCATCATTTGCACATGAATGTCTGATAGGCCTTTTCAGGTCGCCATGTTATATACATGGTCACTACTATTCTGGTTGCACCTGTTCCAAGCCAGCTGGCACCTAGGCTAGGGGAGAAACTCACCACACAGCAGGTAACAAAGATTCAAAGTAACCAATCTGCCACCGGCTTGAAACAAGAAAGTGTTCAAAGaactTCTGGGGTCTCCCCAGCCCCCAGTCTTCATCATGAGGATGATAATGTTCTTCCTGGTTGGGCTTCTAGTCCATGTCATTTTCTTCATCTCCATATTTGACATCTACTTCACATCGCCCTTGGTCCACGGCATGGCCCCCCAGGTgtcccccctgcctccccctgcctcccgcCTGCTGCTGGTGGTTGCAGATGGACTCAGGGCAGACAGTCTCTATAAGCCTGATGCCAATGGATCCACCAGGGCTCCTTACTTAAGgAGTGTGATGGAAGAAACAGGGAGTTGGGGTGTGTCACACACTCGTGTTCCCACCGAGTCTCGACCTGGACACGTTGCTTTGATCGCTGGCTTCTACGAAGATGTCAGCGCTGTAGCTAAaggctggaAGGAGAATCCAGTGGAGTTTGACTCCGTGTTCAATGAGAGCAGACACACCTGGTGTTGGGGCAGCCCTGACATCCTGCCCATGTTTGCCAAAGGTGCCAGTGGGGACCATGTGTACACCTACACCtacccagcagagagagaggactttgCCTCCACCGACGCCTCCAGACTGGACACCTGGGTCTTTGATGAAGTCAAGtcgtTCCTCCAGTCTGCCAGGGTGAACTCCAGTCTGATGTCCAGTCTACAGAAGGATCAGAATGTCTTCTTCCTCCACCTACTGGGCATTGACACCAATGGACACGCCCACAGACCCATGTCACAGGAATATCTAGAGAACATACGTCTGGTTGACTCTGGGGTGAAAGAGCTGGTCTCCATGGTCGAGGACCTTTTTGACAACGATGGAAGAACAGCCTATGTGTTCACCTCTGACCACGGCATGACCAACTGGGGCTCCCATGGTGCAGGCCACCCCTCTGAGACCCTGACCCCATTGTTGGTGTGGGGAGCTGGGGTTCACACTGCTCAGAGAGTCACTGAACCCCAGAAGTACTCCGATGGATACCTACAAGAATGGCAGCTGGAGGGCCTCCGCAGGGTTGATGTCAATCAGGCAGACATAGCGCCACTGATGTCATCTCTTATTGGAGTGCCTATTCCTCTCAACTCTGTGGGTGTGTTACCACTGCAGTACCTGAACAACAGTGACCAGTTTAAAGCTGAGAGTATGTACTCTAACGCCATCCAGATACTGGAGCAGTTCAAGGTGAAGATGGCTCAGAAAAAGGAAACAACTttgtcctttctcttcactccATACCAgtTGCTGACAGAGTCACGCCAGGCAGAGTTTATCAACAAGGCCAGGGTTTTGATCCAGCTAGAGGAATATGAAGAAGCTatCTCTCTGTGCAGGTCTCTGATTGGCCATGCGTTGGAGGGTCTGTCCTACTACCACACCTATGACCGGTTCTTTCTGGGCTGTAGTGTTGTGCTGGGCTTCACAGGCTGGACCTCCTATGTGGTTCTTGTTATACTGAAGACACACGCCAGTCTCAGGAGACCACCCACACCCACTGACCAGgtgTCTGGTAAAACCCTGTGGTGGATGGGTGTGGGAGCTACGCTGCTGATTGGAATGTTCCTGATAATCCAGAGAAGTCCAgtaacctactacatctactgtctactgcctgtcCCTGTCTGGTACTCTGTCCTCAAagagtttGGAACTCTAACAGATCTGGTTCGTTCGTACAGTTCACTACCACTGGGTAAATGCTTTGGCTACTTTGCCCTGGTCACATTTGGGATTGAACTTCTGgtggtaagtttCTTCTATCGGGCCATGTTGACTGTAGGCctggctgttctctctctctggcccctccTCTCTGGCCTCTACAGCAAGGCCAAGtTTAGGTCACTGAGCTGGGTCCTGTGTTGTTTGTTTCTGGCCACATTTCCCATGATGCCAGTTGTTGGGAGAGAAGCCAACATCCACATGGTtaCCTGTGCAGGTGTACTCTCTCTGTTAATTTCCACCTTTTACCTCTGGTTGGCACGGAAACGGACTACACTACACCTGACTGACCGCTACCTCTTAATCTTCCAGATGCTCCATGTAGCAGTGTGTGCCTATGTGCCCACCAGCACTCACTCCAGTCTGCAGCTGAAACAGGGACTGCCTCTCCTCAACCAGATGATCAGTTGGACTACACTGGgttcCTCTCTGTTTGTTCCTTTGTTGAGTTCTACTCGTCTGTTCCATCGTCTGCTCAGTATCTTCCTCTCCCTCACAGCCACCTACCTACTACTGAGTACTGGgtctgaGGCTCTGTTCCCGCCAGTCTTGTCCTGGCTGATGTTTGTGTGGATCAACATAGAACAGGAAGCCATGCTCTCTCAAGGTATCTCTGGGAGACAGGAGCTGTCCACGCTTGACTTCTCTGAAAACATTGACATCACCAAGATCAGACAACTAAAGCTGGATGACATCAGAAGATCCTACTTCTTCGTTTTCTTCATAATTACAGCCTTCTTTGGTACTGGGAACATAGCATCCATTAACAGTTTTGATCCAGCCTCAGTGTACTGCTTCCTCACCGTCTTCAACCCCTTTATCATGGGAGGCCTGATGATGTGGAAGGTGATAATCCCATTCATCATCGTTATGTGTACGTTTGAAACCATCCAGGTCTCTACACAACTTTCCTCCAGAAGTCTGTTCCTCATTGTCCTGGTGATTTCTGACCTGATGGCTCTGCATTTCTTCTTCCTAGTGCAGGACTATGGGAGCTGGCTGGACATTGGCACCAGTATCAGCCACTATGTGATTGTGATGTCCATGACCATCTTCCTGATGCTGCTCAGTCTCATGACCCACATCCTCACGTCCAGGAGAGTCTCTCTGTGGAGGACACGCAAGATGCACTTCCCCTGAacactatctctctcactctgtgtgtgagTTTTTAATCATGCCTATTTATTAACATTCTCCATTAGATTTACCTGAAGTGCACAATTATGCAAAGCAAGATGCCGTAGGACTAACTTTTGATGTGCACTGGAATTGTTTTATTGTAGATGTCTACATTAAAACTGTGGCTTATCAAAGTCAAGGTAGCAAAAACATAACCACATGTAACTGATGGAGTTATTCCCGTAAAAGTTCAATTAAATGCAGTCTCAAATAGCCGCCTTCCCTTTTGAATAGCCGGGTAACggcacacatttcagcaaatGAACGCTGTACGAGGTTACTATGAATTGCCATTAATTGTTTACAAggtttaatgtttgatttgttaaatttCACAAATTCAGTAAGGactcaaaaaaaatatatatcaatcATCCATTTTTATCGACAGTAATAAGCTGGTAGCCATTGGCTGCGAAAAGCTGAGAACTGTTAGCTAACTGGCAACCACAAAAAGTCAACAACTTCGGGAGTACAGACCCCCAGAAATTGGCTGTTCGACCCCCTCTAGTGGCAAAAGTAAGAACTGCCGAAAATACACAGTCAAAGAAGAGAATAATTGTACGTATTCTGGCAAGGATCTATGGGGGAGGAAATATAGCCATACTAAGACAAAAGAAACGTGACGTATGTAAACGTGATGTAAATGATAACACATTTGTGCAGGAAATGAAGACATTGATTAAAATGCTGGAAGTGATTGCTAGAATTAAACCAATAACTATGCAAATGAGGAAAATCTGTGAAATAGAcacctggctcaaatagaagcctgtctctaataatCCTCTTTCTGTTTTCAGTGATTCAAGCCGATAAACTCCCAGGctattttacttttttatttatttatttttaaaacttttttaacggTACATAAACAGATCAGAATTCTGAAGTctgacaaatgtttgtttttttgaggGGCGACATTGTCATAGAGGACCCGGTGTGCATTCATGACTACTCCTTTTCAGCCAACTTACAAGCAAATACTTTACCATCTCATGGTAAGAGTGGCTGAGTTACTAAGCGAGAGTCAGGGTAGAGAGGCACTTCAGAGGGAGAATCTGTGAATCCAATAGCGATATAAGTAGGGGAAATCTAAAGTAGATAGATTTCAGAGGCAACACTCCATAGGCGACAGAGGTCACAGGTGTCGAGGGGAACAGTCAACATGCCGGCGATCAGAGGAAGGCTCCAGGCAGGTGGAAATGATAACATAACAGCACAGTCCAAACTCCGATGTCAGTCAGCTAGCGCGATAGCACTAAACCAAGGATACAAAAGCTACAAAACTCCAGTAGGCCAAAAAGTGGACAAAACAAATGACGAAAGACAGACGAGGTACTAAACAATTAGAGTAGGCAGGGATGATTTGAAGCAAGTCACATTCTGAATGTGCAGAATGCCCCACGTGTAATATGATAGCTGGTTTACATCACACTTCCTCGTGAATGTTGGATTGTAGCTCACCACCGCCAACACTCGGCCTCTTAATGACTGTGGCAATTGTGCATTGTGGGTAGTTTCGACAATATCCGATAATAAGTTAATACATATTTAAAACCCCAAAACAGAACTATTTTGGAAGTTCTAGTTAACCAGATCGTAACTACAACTAAGTTTGACTACACTGTGTTGTCACTTTGTTGAGTAAAAACTGCTGCTTTCTACCCTTTAAGTCTAGGTATAAGTCTATTTCAATGATCTGTATATGATATTGACAACACTATTTTCAACTACTGTTCACCAAAAACATTATGTATAATTTAAATGAAGCCATTAAGTAATGGAACaagagtaataataataatatgccatttagcagacggttttatccaaagcgactcaGTCATGCaagcatacattttacatatgggtggtcccaggtatcaaacccactaccctggtgttaaacgccatgctctaccaactgagctacaaaggaccatGCTCAAGAGTAGCCTAACTAACTTAATTGAATAGTTGATAAGGGATGTATTTGTGTGTTATTGAATTGTTTCCTACTTCGATGTGTGGTAAATAGTTTTATATTCTACAGGGTTATCTATCATATTAATATTGTATTACATAAAAACAATTCAACTGGTACTATATGATGTATTACCTGGTGGATATGGATGGTGTATTAAAATGTTAATTTACTGCCA

Function

symbol description
pign Predicted to enable mannose-ethanolamine phosphotransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in multiple congenital anomalies-hypotonia-seizures syndrome 1. Orthologous to human PIGN (phosphatidylinositol glycan anchor biosynthesis class N).

NR:

description
GPI ethanolamine phosphate transferase 1

GO: NA

KEGG:

id description
K05285 PIGN; GPI ethanolamine phosphate transferase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935104.1 True 5368 mRNA 0.45 30 17926634 17945204

Neighbor

gene id symbol gene type direction distance location
tpk1 NA coding upstream 137313 17709687 ~ 17789321 (+)
LOC110535414 NA coding upstream 389414 17444268 ~ 17537220 (+)
LOC118937326 NA coding upstream 535575 17386005 ~ 17391059 (+)
ezh2 ezh2 coding upstream 557425 17356706 ~ 17369209 (+)
LOC110535409 LOC106578385 coding upstream 574193 17342791 ~ 17352441 (+)
LOC110535422 LOC106578412 coding downstream 4225 17949429 ~ 17960000 (+)
hnf4g hnf4g coding downstream 14982 17960186 ~ 17981897 (+)
pex2 pex2 coding downstream 247420 18192624 ~ 18204153 (+)
LOC110535429 nup58 coding downstream 844966 18790170 ~ 18802871 (+)
ankrd33ba LOC106578420 coding downstream 877130 18822334 ~ 18844891 (+)
G950347 NA non-coding upstream 24764 17901359 ~ 17901870 (+)
G950303 NA non-coding upstream 75096 17840822 ~ 17851538 (+)
G950302 NA non-coding upstream 87477 17835298 ~ 17839157 (+)
G950317 NA non-coding upstream 95754 17830013 ~ 17830880 (+)
G950246 NA non-coding upstream 218016 17708395 ~ 17708618 (+)
G950378 NA non-coding downstream 11483 17956687 ~ 17958862 (+)
G950673 NA non-coding downstream 208899 18154103 ~ 18155431 (+)
G950706 NA non-coding downstream 261151 18206355 ~ 18206604 (+)
G950708 NA non-coding downstream 265202 18210406 ~ 18210671 (+)
G948710 NA other upstream 1324742 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 1381345 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 1591342 16327393 ~ 16338373 (+)
G948587 NA other upstream 1600227 16323350 ~ 16326407 (+)
ccl20b LOC100135878 other upstream 1715794 16209929 ~ 16211192 (+)
G951511 NA other downstream 1181461 19126665 ~ 19127085 (+)
phldb2b tcpe other downstream 1816061 19740565 ~ 19799150 (+)
tlcd4a LOC106570700 other downstream 4781349 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 5720084 23665288 ~ 23665930 (+)
G956797 NA other downstream 5830568 23775772 ~ 23776845 (+)

Expression


Co-expression Network