LOC110535422 (LOC106578412)


Basic Information

Item Value
gene id LOC110535422
gene name LOC106578412
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 17949429 ~ 17960000 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935108.1
ATCCCTTCTCGTGAATGTGGTGTTGTGTGCTTCTGACTCTGCAGACAGTATGTAAAAAGGACCTGTCAAACGCACTGTGCTTTTTTACAAATAAAAGTGGGTGGTAAAGCAGCTCTGGTAAGGGTGGTGCAtaggtcacactctctctcacacgcataCTGTGTGCCCTGACACTCACAAAAACTTCCTGACACTCACACCACCCTGATTTCCTTCTCTGTGGAAAGTTTTTACCTGATCCATCAGAAGTTGGCGTCTCTGGTTCCCTCTAACTCTACCATGTCCGACAAGCCGGAAACCATGTCCATCCTCAAACGTCTTACCCTGTTGTCCATCTATAGCCTGGTCCTGGTCATTGGGGTCATCGGGTTGGCCCTGATGATCCACATCCTCCAATCCAACATGCGATCAGTTATCACCATCGCTATGCTCAACCTCACCCTGGCCCACTTCCTGTTCCTACTCACCGTACCCTTCAGGATCTACTACTATGCTGCTGGTTACTGGATGTTGGGGGAGATGCTGTGTAAGGGGGTCAGTGCCATGATCCACGTGCACATGTACATGGCTTTTGTTTTCTACGTGGTCATCCTCGTCATACGACTGCTGGGGTTCCATAGCAAGAAGGATCGCTACGAGTTCTACAGgaAGTTGCATGCTTTTGGCGCCAGTGTGGCAGTGTGGACAGTGATGTTTATGGTCATCCCCCCCATCCTTTATTACAACTACGGCAAGGACGTCCACGataacaccaccaacaacaagaCAAACACAATGTCCAACAATTATTCCCACTGTTTCCAGTTCGGCAACCACCTGAAAAAACACATTGTTGCCAAGGTGCTGAACTACATCATGAGCTCTGTGATCATCATTGTGGCCTGTGTGCTGACGGCACTGCAGTGTCATGTCATGGTCCTTCTGACCAGGAAGTATGGGCGAGACTGCATGTCTCACCAGGAGTTCTGGGCTCAGCTGAAGAGCCTGTGTTTTGCTTTGGTGCTGCTTGTGTGTTTTGTCCCCTATCACGTGTTCAGGATGTACTACCTGGGACACCTTGAGCTGGAGAACATTAACGAGGTATTCCTCAGTCTCACGGCCTTCAGCTGTTTCGACATGCTTACCTTCCTAGGGAGGGGACACTGCTATATGTGTAACAGAGCACGGACTGTGTGACCTCTTCTCACACAAACTCAGAGCCGAAACCTTGCTGTAAGAGCGTTTCCTTTTTAAACAGTACTTTAGCGCCATCTGCTGCTTATTCATATAGCTACGCAAGAGAGTACGTCTACTATAGACTTCACTATAATTTATTTATAATCTTATTGGAATTTAAAATAACTTGTGCCAATGATGTTTCTCTCTATATGCCGATTTCACTGTTTGCTAAAACTATTTGTAAGGGCGAGATCTGGCTACATATGGTccaaatattgtaataaataaatacatcgcTAAAAT
>XM_036935106.1
TTCTCGTGAATGTGGTGTTGTGTGCTTCTGACTCTGCAGACAGTATGTAAAAAGGACCTGTCAAACGCACTGTGCTTTTTTACAAATAAAAGTGGGTGGTAAAGCAGCTCTGGTAAGGGTGGTGCAtaggtcacactctctctcacacgcataCTGTGTGCCCTGACACTCACAAAAACTTCCTGACACTCACACCACCCTGATTTCCTTCTCTGTGGAAAGTTTTTACCTGATCCATCAGAAGCGAAGTTGGCGTCTCTGGTTCCCTCTAACTCTACCATGTCCGACAAGCCGGAAACCATGTCCATCCTCAAACGTCTTACCCTGTTGTCCATCTATAGCCTGGTCCTGGTCATTGGGGTCATCGGGTTGGCCCTGATGATCCACATCCTCCAATCCAACATGCGATCAGTTATCACCATCGCTATGCTCAACCTCACCCTGGCCCACTTCCTGTTCCTACTCACCGTACCCTTCAGGATCTACTACTATGCTGCTGGTTACTGGATGTTGGGGGAGATGCTGTGTAAGGGGGTCAGTGCCATGATCCACGTGCACATGTACATGGCTTTTGTTTTCTACGTGGTCATCCTCGTCATACGACTGCTGGGGTTCCATAGCAAGAAGGATCGCTACGAGTTCTACAGgaAGTTGCATGCTTTTGGCGCCAGTGTGGCAGTGTGGACAGTGATGTTTATGGTCATCCCCCCCATCCTTTATTACAACTACGGCAAGGACGTCCACGataacaccaccaacaacaagaCAAACACAATGTCCAACAATTATTCCCACTGTTTCCAGTTCGGCAACCACCTGAAAAAACACATTGTTGCCAAGGTGCTGAACTACATCATGAGCTCTGTGATCATCATTGTGGCCTGTGTGCTGACGGCACTGCAGTGTCATGTCATGGTCCTTCTGACCAGGAAGTATGGGCGAGACTGCATGTCTCACCAGGAGTTCTGGGCTCAGCTGAAGAGCCTGTGTTTTGCTTTGGTGCTGCTTGTGTGTTTTGTCCCCTATCACGTGTTCAGGATGTACTACCTGGGACACCTTGAGCTGGAGAACATTAACGAGGTATTCCTCAGTCTCACGGCCTTCAGCTGTTTCGACATGCTTACCTTCCTAGGGAGGGGACACTGCTATATGTGTAACAGAGCACGGACTGTGTGACCTCTTCTCACACAAACTCAGAGCCGAAACCTTGCTGTAAGAGCGTTTCCTTTTTAAACAGTACTTTAGCGCCATCTGCTGCTTATTCATATAGCTACGCAAGAGAGTACGTCTACTATAGACTTCACTATAATTTATTTATAATCTTATTGGAATTTAAAATAACTTGTGCCAATGATGTTTCTCTCTATATGCCGATTTCACTGTTTGCTAAAACTATTTGTAAGGGCGAGATCTGGCTACATATGGTccaaatattgtaataaataaatacatcgcTAAAAT
>XM_036935107.1
CAATCGCAAAGCCCGTGAAATATATTCACATGCGCGCCTAGTTACAGCTGAATATCATCTGCAGGCAGCAAGAATGTGcagctctcaactggttttggcatggagcagctcacagaataACGACATCGGTAGCCCGCGAAGTTGGCGTCTCTGGTTCCCTCTAACTCTACCATGTCCGACAAGCCGGAAACCATGTCCATCCTCAAACGTCTTACCCTGTTGTCCATCTATAGCCTGGTCCTGGTCATTGGGGTCATCGGGTTGGCCCTGATGATCCACATCCTCCAATCCAACATGCGATCAGTTATCACCATCGCTATGCTCAACCTCACCCTGGCCCACTTCCTGTTCCTACTCACCGTACCCTTCAGGATCTACTACTATGCTGCTGGTTACTGGATGTTGGGGGAGATGCTGTGTAAGGGGGTCAGTGCCATGATCCACGTGCACATGTACATGGCTTTTGTTTTCTACGTGGTCATCCTCGTCATACGACTGCTGGGGTTCCATAGCAAGAAGGATCGCTACGAGTTCTACAGgaAGTTGCATGCTTTTGGCGCCAGTGTGGCAGTGTGGACAGTGATGTTTATGGTCATCCCCCCCATCCTTTATTACAACTACGGCAAGGACGTCCACGataacaccaccaacaacaagaCAAACACAATGTCCAACAATTATTCCCACTGTTTCCAGTTCGGCAACCACCTGAAAAAACACATTGTTGCCAAGGTGCTGAACTACATCATGAGCTCTGTGATCATCATTGTGGCCTGTGTGCTGACGGCACTGCAGTGTCATGTCATGGTCCTTCTGACCAGGAAGTATGGGCGAGACTGCATGTCTCACCAGGAGTTCTGGGCTCAGCTGAAGAGCCTGTGTTTTGCTTTGGTGCTGCTTGTGTGTTTTGTCCCCTATCACGTGTTCAGGATGTACTACCTGGGACACCTTGAGCTGGAGAACATTAACGAGGTATTCCTCAGTCTCACGGCCTTCAGCTGTTTCGACATGCTTACCTTCCTAGGGAGGGGACACTGCTATATGTGTAACAGAGCACGGACTGTGTGACCTCTTCTCACACAAACTCAGAGCCGAAACCTTGCTGTAAGAGCGTTTCCTTTTTAAACAGTACTTTAGCGCCATCTGCTGCTTATTCATATAGCTACGCAAGAGAGTACGTCTACTATAGACTTCACTATAATTTATTTATAATCTTATTGGAATTTAAAATAACTTGTGCCAATGATGTTTCTCTCTATATGCCGATTTCACTGTTTGCTAAAACTATTTGTAAGGGCGAGATCTGGCTACATATGGTccaaatattgtaataaataaatacatcgcTAAAAT

Function

NR:

description
probable G-protein coupled receptor 141 isoform X1

GO: NA

KEGG:

id description
K08429 GPR141; G protein-coupled receptor 141

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935108.1 False 1461 mRNA 0.47 3 17949429 17960000
XM_036935106.1 False 1461 mRNA 0.47 3 17949434 17960000
XM_036935107.1 True 1353 mRNA 0.47 3 17950540 17960000

Neighbor

gene id symbol gene type direction distance location
pign pign coding upstream 4225 17926634 ~ 17945204 (+)
tpk1 NA coding upstream 160108 17709687 ~ 17789321 (+)
LOC110535414 NA coding upstream 412209 17444268 ~ 17537220 (+)
LOC118937326 NA coding upstream 558370 17386005 ~ 17391059 (+)
ezh2 ezh2 coding upstream 580220 17356706 ~ 17369209 (+)
hnf4g hnf4g coding downstream 186 17960186 ~ 17981897 (+)
pex2 pex2 coding downstream 232624 18192624 ~ 18204153 (+)
LOC110535429 nup58 coding downstream 830170 18790170 ~ 18802871 (+)
ankrd33ba LOC106578420 coding downstream 862334 18822334 ~ 18844891 (+)
LOC110535436 LOC106578460 coding downstream 1338579 19298579 ~ 19310732 (+)
G950347 NA non-coding upstream 47559 17901359 ~ 17901870 (+)
G950303 NA non-coding upstream 97891 17840822 ~ 17851538 (+)
G950302 NA non-coding upstream 110272 17835298 ~ 17839157 (+)
G950317 NA non-coding upstream 118549 17830013 ~ 17830880 (+)
G950246 NA non-coding upstream 240811 17708395 ~ 17708618 (+)
G950673 NA non-coding downstream 194103 18154103 ~ 18155431 (+)
G950706 NA non-coding downstream 246355 18206355 ~ 18206604 (+)
G950708 NA non-coding downstream 250406 18210406 ~ 18210671 (+)
G950669 LOC106578414 non-coding downstream 274892 18234892 ~ 18238442 (+)
G948710 NA other upstream 1347537 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 1404140 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 1614137 16327393 ~ 16338373 (+)
G948587 NA other upstream 1623022 16323350 ~ 16326407 (+)
ccl20b LOC100135878 other upstream 1738589 16209929 ~ 16211192 (+)
G951511 NA other downstream 1166665 19126665 ~ 19127085 (+)
phldb2b tcpe other downstream 1801265 19740565 ~ 19799150 (+)
tlcd4a LOC106570700 other downstream 4766553 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 5705288 23665288 ~ 23665930 (+)
G956797 NA other downstream 5815772 23775772 ~ 23776845 (+)

Expression


Co-expression Network