pex2 (pex2)


Basic Information

Item Value
gene id pex2
gene name pex2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 18192624 ~ 18204153 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620411.2
AGCGACCTAATGCAATTGGCTAAACATGCTTGCTGCTGGGCACTCATTTGTCGATTGGCCCGTTCGCTTTTAGAGGAGTGGTTAGCGTTGACAACCCGGAAATGAAGTGCGTTCACATCTAGGTGACAAACGGTCGATTTCAAGCAAAACAATGGCTTCTACCGGAGGAGCCCATCCCCCACCAGAGGGAGGTTCAGGTCCAGACCCTCAGACTCCTGTCTTGAGGATCAACCAGCTGGATGCCTTTGAGCTGGACTCTGCTCTGGACCAGCTGGTGTGGAACCAGTTCTCCCAGTGTTTCCAACACTTCCGCCCAGGCCTGCTCACTCCCGTGGAGCCTGAACTCAAGgccctgctccagctccttctctGGAGGTTCACAGTCTACCCCAACAGTGCTACGGTGGGCCAGTCTATGATGAACCTCCGTTACCACAACACTCTGTCACTATCCCAGCGCTACAGGGCCCTGAGCAGGAGACAGAGGCTGGGCCTGGCCCTGCTGACAGTCGGACCCCGCTGGCTGACGGAGCGATCCCACAGCTTGCTCCTCTccctggggttggggctgggcgGCAGTCCCCCGGCCGATGGAGGTCTGCGTCTGGGACTGCGTCGAGTTCTTTCTTTGATCACCGGCCTTACCCAGGTAGCCAATCTGATCAACTTCCTGGTGTTCCTGAGGAAGGGGCGCCACCCATATCTGACAGAAAGGATCCTGGGTATCCGTGCGGTGTTCACTAAGCCCCAGGCGGTCCGGGATGCAGCCTTCCAGTACATGAATAGAGAGCTGCTGTGGCACGGCTTCGCTGagttcctcatcttcctcctccctctagtCAACATGAGGAAGATCAAGACAACCATGTACTCACTTCTCTACCCCCTAGGAGtgggtgagggaggggaggagggggtgagagagggctCAGCGGTGTGGAAGGAGTGTGCTCTGTGTGGGGAGTGGCCTACCATGCCTCACACGGTAGGTTGTGGTCATGTGTTCTGTTACTACTGCGTCAAGAGTCACTCCATCGCAGACGCCTACCTGACATGTCCTAAGTGTGGCGTAGAAGTCGGGGAGGCAAAGGCTGTCAAACTGCAGATCGAGATTACTGACATCCACACTAGATGATAATGTCACATCCAGTCACGGGAACACACACAACACGTGTTTACTTGTAAAGTGAGATTTTGGTGACACTCAAGGTCACAGTGAATGGACTTCAATACACAGTGTCTATAGAAAAATTGACatttacacatgcacacacacaaacacggacAGACattcagaaatacacacacacacaaagggtctCAGAGGGGCCCTTTAACTGAGCAAGGTTTCTTTGCTTAAGATACTCTGGGTGACGATGGAAGATGCACTGGAAAGACAAGATGATGATGACTGAGATTCAGTCTGTTGTATGAACAGACAGGGCCTGTCTGCCCATGTATAATGTATGTGAGCACACACTCACTGACCATCATGCTCCTGTTGCCCCTCCATTCCTACTGTTAGACTTTGGACAGACCTGTTTGTTCACACAGCTCTGAGTGACTGTTGGAGAAACACAGAGCATATATTTGATGAAGAAATGTGTTGATTTTGCTCCAAATTGGCcttgtgctgctctgttctgttcaaaTGGGAATATTTGTTCTGATGAAAAATGCAAAAACATGACTGACGGGACTAATAAATAATGGATGATTTTCTGTTGCTCATCACCGCTAACGAAATTTGCATCTGTTTGTATTTGTGCCTAAATTCTGTTCATTAAAATGTAGTCAATTTAATTAATACCCAAA
>TU1084075
CCGGAAATGAAGTGCGTTCACATCTAGGTGACAAACGGTCGATTTCAAGCAAAACAATGGcaggataatGACCCGACACACcgtcaggctgtgtaagggctatttgaccaagaaggagagtgatggattgctgcatcagatgacctggcctccacaatcacctgacctcaaccgaattgagatggtttgggataagttggactgcagtgtgaaggaaaagcagccaacaagtgctcagcatatgtgggaactccttcaagactgttgaaaagcattccaggtgaagctggttgagagaatgccaagattgtgcaaagctgtcatcaaggcaaagggtggctactttgaagaat

Function

symbol description
pex2 Predicted to enable metal ion binding activity. Predicted to be located in peroxisome. Human ortholog(s) of this gene implicated in peroxisomal biogenesis disorder and peroxisome biogenesis disorder 5A. Orthologous to human PEX2 (peroxisomal biogenesis factor 2).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620411.2 False 1815 mRNA 0.51 3 18192624 18204153
TU1084075 True 353 lncRNA 0.47 2 18192719 18195217

Neighbor

gene id symbol gene type direction distance location
hnf4g hnf4g coding upstream 210727 17960186 ~ 17981897 (+)
LOC110535422 LOC106578412 coding upstream 232624 17949429 ~ 17960000 (+)
pign pign coding upstream 247420 17926634 ~ 17945204 (+)
tpk1 NA coding upstream 403303 17709687 ~ 17789321 (+)
LOC110535414 NA coding upstream 655404 17444268 ~ 17537220 (+)
LOC110535429 nup58 coding downstream 586017 18790170 ~ 18802871 (+)
ankrd33ba LOC106578420 coding downstream 618181 18822334 ~ 18844891 (+)
LOC110535436 LOC106578460 coding downstream 1094426 19298579 ~ 19310732 (+)
LOC110535438 NA coding downstream 1125828 19329981 ~ 19335648 (+)
ssm4 ssm4 coding downstream 1137828 19341981 ~ 19345685 (+)
G950673 NA non-coding upstream 37193 18154103 ~ 18155431 (+)
G950378 NA non-coding upstream 233762 17956687 ~ 17958862 (+)
G950347 NA non-coding upstream 290754 17901359 ~ 17901870 (+)
G950303 NA non-coding upstream 341086 17840822 ~ 17851538 (+)
G950302 NA non-coding upstream 353467 17835298 ~ 17839157 (+)
G950706 NA non-coding downstream 2202 18206355 ~ 18206604 (+)
G950708 NA non-coding downstream 6253 18210406 ~ 18210671 (+)
G950669 LOC106578414 non-coding downstream 30739 18234892 ~ 18238442 (+)
G950761 NA non-coding downstream 112446 18316599 ~ 18317453 (+)
G950787 NA non-coding downstream 155879 18360032 ~ 18369456 (+)
G948710 NA other upstream 1590732 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 1647335 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 1857332 16327393 ~ 16338373 (+)
G948587 NA other upstream 1866217 16323350 ~ 16326407 (+)
ccl20b LOC100135878 other upstream 1981784 16209929 ~ 16211192 (+)
G951511 NA other downstream 922512 19126665 ~ 19127085 (+)
phldb2b tcpe other downstream 1557112 19740565 ~ 19799150 (+)
tlcd4a LOC106570700 other downstream 4522400 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 5461135 23665288 ~ 23665930 (+)
G956797 NA other downstream 5571619 23775772 ~ 23776845 (+)

Expression

pex2(pex2) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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pex2(pex2) Expression in each Bioproject

Bar chart with 21 bars.
pex2(pex2) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3000.
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Co-expression Network