LOC110535436 (LOC106578460)


Basic Information

Item Value
gene id LOC110535436
gene name LOC106578460
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 19298579 ~ 19310732 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620425.2
TGGAAAGTGAAAGCTATTGGAGTCAGTGACGGAAGTTAAGTATATTGTCATGCTGGCCAAGCAGGGAGATTGATAGATAAACAAGCCCGGCTAGTTATTATAGGCTTATTATAGCTAGAAAATAAAGGGATTTATTTCAGTAAGAAACACTACAACGCATGAACATTTTACTGCTGTATGGAAAACGCAACAACGCAGCCAGAGTGGTGGGAGTGGCACCTTTTTGTGAATATGAACCAAGAATGGTAGCCTACATACAAATGaatattCTTGGcatctctgtcttttctctcatGCTGCTACCTCTGGTGTTGTCTTGCGACAGCAACAGGACTATGAGAGAGATCGCTGAGGACTACGAGACTGTCATCTACCCGCTTCTTCAGAACCTTGAGAACAACATCACGGAATCGTTAAAAGTGGTTAATAAAACCTGCACGGAGAAGGAAATCGCTGAATGTGAGAAGGATAAAGAGAGACAGTTCATCCACAACATGCTGTGTAGCCATACCAGACTCATCAGGCTCTATAAGCTAGAGAGGCTCAAGAGAGACATCCTGTGCTCACTGGGCCGCCACTGTCCTAGAAAACAGAGGAGTTCACAAGGACAGAGCGCACACCATCAGAATAGAAAGAAGtcaggaggagaaagggaggaggaaaaCAAGAAAACTGAGGAGAACAGAGGGACcatggaggaaggaggggagagggtggaCAGTGGGAAACAGCAGAGACCAGATaaatgggagggaaggaggagcacAGAGGCGATGGAGCGGAGGAGGAGACGGTGTGGACAGAAGGTGTTTGTGGACAGCTTGAACGGGTGCTACATGTCCCTGGCTGAAAGATATGGAGGCCTGACATGAGAGGAGAGACGTGGCCCGGAGCTAACCGCACCAAGAACCAACAAACTTACTGTAAAGTGTATAGTTACTGTAAAGAAAACAATGATACCATACGTCCTGTAAAGTAGTATCGTCTTGCCAGACACTTACTTagaataaaagtgtctgctaaatattAATCCTATTATAATAGACAAAGGCGAAAATCTCTGTGGTACCCAACAAAGTGTGAGGTGTTCTATGGCGATGATGAAACTAGTGTCGTAATGATAAGTCTGTGGCACAGTGCAATTATgctaaagcaaacaaacaaagatGATTGAATGCTTGTGTACAAATGAAGTGCACTTTTGAGTAGAGAGACTTGTAGCTCATGATGTCCCTCTTTCTGCTGCAGTGAGTGGTATTGGGCAGTGAGCCTGGCCTCAGGTGTGTGACAGCGTTGCGTTATTATTATAGAATGGCAGTTTGAAAGCCTATTACGCCAAGGATGTTTGCTTTCAAGTCGGTGTCTTAACTGAAATCCACATTGGGCTACTAAAAACCTTCCCCAAAAGCTTCCTGTGAAATTCAACCAACGCCTTTCGCACAAGCCCTTATTTGATGAATGAAACTCATCTTGACCTGATTTCAATCTTTGTAGAGTAGTTTTCCAAGCATAAGGCACCATGATATCCTATGTTGTCTTATTGTAACTGTAGCATTGGTTTTAGTACTATTTATTTATATTCTGAAATCATATTGACTCAAGTGTTAACTGTACCCCTGTAATCATTTTATTGTGTAGCACTTAAATTATCCCCTTCATGTGTCAGTGCAAAATAAGAAGTTTTGATGTTGATGTGATCCTTAGGCCACTATAACTCTACATTAATAGAGTTTAAACTGCCATTGTGGTTttgcctgggtgccagtctgtttctgctgttGCCATATAACACTTTCAAAGCCTGGGGAAGAAGGAGAATATGTGCATTAATTACTCTGATCCTTATAATGTGACAAAGTGGTAGTTGTACATGCTAGCATGATTAATTGTGCATTTATATtgtaacattttattttgtttagtgttttgttgCTCAAGTATTTGATGAATAGTGTCTTATGTtgcattcataaccaagtgggaaggtggtaatTACTTGTTGTGAAGTCGTATTGAGTTGGATGCATTCACATGCTTTGAACTCGTTGAGAAAGCTGCGTCAAACCAGAAACTGAAAGTATAGCTATCATGcttaaacaaatgatagtcttcAAAAACAATACGAATAGATTGTTTCTTGTTGCATTTAACTGTTGAAAATGCCGTTAGAGGTCATTTCCTTAATAGGTGAAttcagcatgtgggagaagtggTAGCTCAGGGATCATAGacgagtttcccactagtaattgcGAGTTGGAAGGGCATTCCAGGGGATTTTTCCCAGTCGTATAGTCCTATGTACGAATTTATGAGGTCTTATATAAAGagcttcaaaataaaaaacaaaacaaccaatacatcatgagtagcTTAGCTAAAGTAAAGGTCAACTAATAGAGGTCAAGTCTTTGAGTGCATGTATCCTCCAAAGATGGAGAGGGGCTACTCTAGAGGGCTACTCTGGGAAACAGCCTAAGTCATGTAGCTACTGGACTTCTCCCTCACAATGTATGGCACCCACTTGGGTGAACCCCCAGCAGGTCTAGGCATCAGTCGTCCTCATTATGAGCCCTTTGCCTCAGCACTCCAATTCCTCTCAAGTGTGAGGTGACTCTTCAATTGATGTTTTCAAACTCCAAAGATCAGGAACCAGCAGCCAGGTGAAACAAAGAATCTGGTACAATGTCTAGATGCATCATTCAAACAAAAACAATgtgccagctaactagctagccaagcCAAAAAGAGCGGACCTGCCAGTCCATCTTCAAATCTGTGGGTTAAAACCCCCATGGATATGCAATAAAACTCAATGTTATAAAAAAAACagctgataaaaaaatatatatttaaaacactTACAAATGATGAAATATGTTCATATTTACAGGATCTCTCTGCTTAGGTTGCTACTGGGGCGCTATGGAAACTATAGAACTAATAATAAGCCCATTTGGGCTGGTCACCAAATGGTGTATGACATGgaaaacaaaaagaaaacaaacagATATCAGGCTGATTGTGTTATCCATGTGCTGTATGCTATGTGTTATACTCTACCAAGGactgtaaatatatttttatattcaactgcaaatatattttatattcaa
>TU1085613
gtaacgatggtgacaggtgtgagatataacaagcagcctggtgacctagaggccggagagggagcacacatgacaAAGAAATTGGtgcgtctggtttgcttaatataaggaattttgaaattatttatacttttggtgcttaagtatattttagcaattaaatTTACTTCTGATATTTAAGTatgttttaaaccaaatacttgtagacttttactgggtgaatttcacttttactggagtcattttctattaaagtatcttcATTTTTTCACCACTGCTTCCTTCCATCTTTTCATCCCTCGCTCCTTTTCTCATCTCTCACCTGTCCAAAGATCAACCCCAGGGCAATGGTCCTGCTATTTTAGATTAGGAACTGCATCACCAGAGTAGACAACCAACACAGAacgttgacttgaatgggaatgtcCACTGTAGTCCATCTAATTCTCCAGATGACTCTGATCATTGTTTTGTAGGAGAGACAGTTCATCCACAACATGCTGTGTAGCCATACCAGACTCATCAGGCTCTATAAGCTAGAGAGGCTCAAGAGAGACATCCTGTGCTCACTGGGCCGCCACTGTCCTAGAAAACAGAGGAGTTCACAAGGACAGAGCGCACACCATCAGAATAGAAAGAAGtcaggaggagaaagggaggaggaaaaCAAGAAAACTGA

Function

NR:

description
uncharacterized protein LOC110535436 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620425.2 False 3116 mRNA 0.41 5 19298579 19310732
TU1085613 True 679 lncRNA 0.41 2 19307438 19308292

Neighbor

gene id symbol gene type direction distance location
ankrd33ba LOC106578420 coding upstream 453688 18822334 ~ 18844891 (+)
LOC110535429 nup58 coding upstream 495708 18790170 ~ 18802871 (+)
pex2 pex2 coding upstream 1094426 18192624 ~ 18204153 (+)
hnf4g hnf4g coding upstream 1316682 17960186 ~ 17981897 (+)
LOC110535422 LOC106578412 coding upstream 1338579 17949429 ~ 17960000 (+)
LOC110535438 NA coding downstream 19249 19329981 ~ 19335648 (+)
ssm4 ssm4 coding downstream 31249 19341981 ~ 19345685 (+)
LOC110535439 LOC106578454 coding downstream 66403 19377135 ~ 19385929 (+)
LOC110535440 LOC106590594 coding downstream 90790 19401522 ~ 19414736 (+)
LOC110535441 LOC106578452 coding downstream 104390 19415122 ~ 19426756 (+)
G951627 NA non-coding upstream 1020 19297355 ~ 19297559 (+)
G951624 NA non-coding upstream 3792 19294394 ~ 19294787 (+)
G951623 NA non-coding upstream 5853 19292516 ~ 19292726 (+)
G951621 NA non-coding upstream 7894 19290464 ~ 19290685 (+)
G951620 NA non-coding upstream 9319 19288856 ~ 19289260 (+)
G952064 NA non-coding downstream 4868 19315600 ~ 19315953 (+)
G952201 NA non-coding downstream 289181 19599913 ~ 19600359 (+)
G952208 ndub4 non-coding downstream 301059 19611791 ~ 19613762 (+)
G951511 NA other upstream 171494 19126665 ~ 19127085 (+)
G948710 NA other upstream 2696687 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 2753290 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 2963287 16327393 ~ 16338373 (+)
G948587 NA other upstream 2972172 16323350 ~ 16326407 (+)
phldb2b tcpe other downstream 450533 19740565 ~ 19799150 (+)
tlcd4a LOC106570700 other downstream 3415821 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 4354556 23665288 ~ 23665930 (+)
G956797 NA other downstream 4465040 23775772 ~ 23776845 (+)
G957942 NA other downstream 5289739 24600471 ~ 24601653 (+)

Expression


Co-expression Network