LOC110535438


Basic Information

Item Value
gene id LOC110535438
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 19329981 ~ 19335648 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475252.2
TGACCAACCACCGAACCATTGTGCCCAGCGCTCAAACGTCATGCCCTACGTGCGGCCACTGCGCCCGCCGTGCAGCAAGAAAGGTCCGGTTGCATCTGTAGACGCGAGTCGCGACGTAAATCACAGACGACAGTCGACTTCCTCATGTCGCTGTGTGATTGACCGTGCATAGCAGCTTCTGTTTGGAAGTCCTCAGCACACACAGGCCCTGCTATGTTGAGGTGTATCAGCTATGACTGATGTGGAGGCGACATATGAAGACTTCATCGCTTCACAGCGGACCGGCCGACGGAACGCCGTACACGACATCCCACAATCCCCTGAGGCACAGGGACCCAGCGACCTATCACACGACCTGGCTCAGCTCAACATCAACAAATCCGgTGAAGGAGAGGATGCTGAAAAGAGCCAGGCCCCGTCAGATTCTTCATCCCAACGAGGGGAGGGGGGTAAAGAGTAGGAGGGCTAgcagacgatcagtggtcatcaGTGGACAAACTGCTGCTCTTTTTCCAAACTTTTAATCTGTGAACTGATCTTTCACCCTACTATTGTCTAGTAGTCCCTCCCCAACTTCTCTCAAAACTATGCCCTGAGCCAATAATATGAATTGTTGGGTTTACTTAGGCAGCCGCAGCACACTGAGCCCTCTGTGCTGGTCCGCATCCCAACAGTCTTAAAAAGCTCCCTTTCCTTACCTACTTTCCTTCTAAACCACTGAAGCTGAAACTAGATAAGACCCCAGTTCcgattctcccctctctccttgaAGTGTGTACACTTCAGGGAAAGAGGAAGAAACGGAATGAATGGGAAGGAACAGAATTGGAGTAATATGGTACGACAGATGAAAACAATGTGGTGGAATCTTACCCATTGACTTTTCGGTGGTCCTTCCTAAAGGAAAGGAAGCCATTTAATGTGTTTGGGACGTAGCAGAAGATGTTTTCAATAGAGGAAGTTGAACTTGCCTAACCCGCCTTGGGGATTCTCTATGGTTACCACTCTAAACACAGAACTAAACTGTAACAATGAACAGTGATTGGACACTGACTCCAGCTCTTTCCTCTCTGCCCTGATGCCATTGGCCCAGGCCCCCTGTCAATCATGTGGACATCCTTACAGTAACAACAACCTCCTTTCACTCTCTAAATGATTGAACCTTCATTTATCCAAGTGATCTCCTGAGCTTGAGAACCTCTTTTACCAGAGACTTGACAAGGCACTGGGGTTGGAAACTAAAATGTCATATACATTGTCATGACGTGATAATTGGACACACTGACACTAAAAGATGGCCGTTAATTTCGCTGCACTGTTTTGCTTGTCTCCAACAGGTTTGCTATGTAAGCGTACACTGCTAGCTGATGTCCCCTCCATAGCGTGTGGCTGATCAGTGTGTTTACTGGTCATGTCCTGTCTCACCCACTGTACCAGGAATTGAGCTGTGACTtactcttttttttgttttgttttttgtctgTATTTCATAAAACAAGTTATTAATCCAAATTCATAGGCTACAATTTCCGTAATGGATTATTTAATCAGTTTGGATTAGTAACTCGTTACGAGAAGAACACTAGTTTTGAAGGTGAGACTGACATCTATGCTCGACGCCATTGTTGAGTTGTTTGTTTGGATGTACAAATAAAGATCATTCATCATTGA
>TU1085633
CAAACGTCATGCCCTACGTGCGGCCACTGCGCCCGCCGTGCAGCAAGAAAGGTCCGGTTGCATCTGTAGACGCGAGTCGCGACGTAAATCACAGACGACAGTCGACTTCCTCATGTCGCTGTGTGATTGACCGTGCATAGCAGCTTCTGTTTGGAAGTCCTCAGCACACACAGGCCCTGCTATGTTGAGGTGTATCAGCTATGACTGATGTGGAGGCGACATATGAAGACTTCATCGCTTCACAGCGGACCGGCCGACGGAACGCCGTACACGACATCCCACAATCCCCTGAGGCACAGGGACCCAGCGACCTATCACACGACCTGGCTCAGCTCAACATCAACAAATCCGgTGAAGGAGAGGATGCTGAAAAGAGCCAGGCCCCGTCAGATTCTTCATCCCAACGAGGGGAGGGGGGTAAAGAGTAGGAGGGCTAgcagacgatcagtggtcatcaGTGGACAAACTGCTGCTCTTTTTCCAAACTTTTAATCTGTGAACTGATCTTTCACCCTACTATTGTCTAGTAGTCCCTCCCCAACTTCTCTCAAAACTATGCCCTGAGCCAATAATATGAATTGTTGGGTTTACTTAGGCAGCCGCAGCACACTGAGCCCTCTGTGCTGGTCCGCATCCCAACAGTCTTAAAAAGCTCCCTTTCCTTACCTACTTTCCTTCTAAACCACTGAAGCTGAAACTAGATAAGACCCCAGTTCcgattctcccctctctccttgaAGTGTGTACACTTCAGGGAAAGAGGAAGAAACGGAATGAATGGGAAGGAACAGAATTGGAGTAATATGGTACGACAGATGAAAACAATGTGGTGGAATCTTACCCATTGACTTTTCGGTGGTCCTTCCTAAAGGAAAGGAAGCCATTTAATGTGTTTGGGACGTAGCAGAAGATGTTTTCAATAGAGGAAGTTGAACTTGCCTAACCCGCCTTGGGGATTCTCTATGGTTACCACTCTAAACACAGAACTAAACTGTAACAATGAACAGTGATTGGACACTGACTCCAGCTCTTTCCTCTCTGCCCTGATGCCATTGGCCCAGGCCCCCTGTCAATCATGTGGACATCCTTACAGTAACAACAACCTCCTTTCACTCTCTAAATGATTGAACCTTCATTTATCCAAGTGATCTCCTGAGCTTGAGAACCTCTTTTACCAGAGACTTGACAAGGCACTGGGGTTGGAAACTAAAATGTCATATACATTGTCATGACGTGATAATTGGACACACTGACACTAAAAGATGGCCGTTAATTTCGCTGCACTGTTTTGCTTGTCTCCAACAGGTTTGCTATGTAAGCGTACACTGCTAGCTGATGTCCCCTCCATAGCGTGTGGCTGATCAGTGTGTTTACTGGTCATGTCCTGTCTCACCCACTGTACCAGGAATTGAGCTGTGACTtactcttttttttgttttgttttttgtctgTATTTCATAAAACAAGTTATTAATCCAAATTCATAGGCTACAATTTCCGTAATGGATTATTTAATCAGTTTGGATTAGTAACTCGTTACGAGAAGAACACTAGTTTTGAAGGTGAGACTGACATCTATGCTCGACGCCATTGTTGAGTTGTTTGTTTGGATGTACAAATAAAGATCATTCATCATT
>TU1085634
CAAACGTCATGCCCTACGTGCGGCCACTGCGCCCGCCGTGCAGCAAGAAAGGTCCGGTTGCATCTGTAGACGCGAGTCGCGACGTAAATCACAGACGACAGTCGACTTCCTCATGTCGCTGTGTGATTGACCGTGCATAGCAGCTTCTGTTTGGAAGTCCTCAGCACACACAGGCCCTGCTATGTTGAGGTGTATCAGCTATGACTGATGTGGAGGCGACATATGAAGACTTCATCGCTTCACAGCGGACCGGCCGACGGAACGCCGTACACGACATCCCACAATCCCCTGAGGCACAGGGACCCAGCGACCTATCACACGACCTGGCTCAGCTCAACATCAACAAATCCGgTGAAGGAGAGGATGCTGAAAAGAGCCAGGCCCCGTCAGATTCTTCATCCCAACGAGGGGAGGGGGGTAAAGAGTAGGAGGGCTAgcagacgatcagtggtcatcaGTGGACAAACTGCTGCTCTTTTTCCAAACTTTTAATCTGTGAACTGATCTTTCACCCTACTATTGTCTAGTAGTCCCTCCCCAACTTCTCTCAAAACTATGCCCTGAGCCAATAATATGAATTGTTGGGTTTACTTAGGCAGCCGCAGCACACTGAGCCCTCTGTGCTGGTCCGCATCCCAACAGTCTTAAAAAGCTCCCTTTCCTTACCTACTTTCCTTCTAAACCACTGAAGCTGAAACTAGATAAGACCCCAGTTCcgattctcccctctctccttgaAGTGTGTACACTTCAGGGAAAGAGGAAGAAACGGAATGAATGGGAAGGAACAGAATTGGAGTAATATGGTACGACAGATGAAAACAATGTGGTGGAATCTTACCCATTGACTTTTCGGTGGTCCTTCCTAAAGGAAAGGAAGCCATTTAATGTGTTTGGGACGTAGCAGAAGATGTTTTCAATAGAGGAAGTTGAACTTGCCTAACCCGCCTTGGGGATTCTCTATGGTTACCACTCTAAACACAGAACTAAACTGTAACAATGAACAGTGATTGGACACTGACTCCAGCTCTTTCCTCTCTGCCCTGATGCCATTGGCCCAGGCCCCCTGTCAATCATGTGGACATCCTTACAGTAACAACAACCTCCTTTCACTCTCTAAATGATTGAACCTTCATTTATCCAAGTGATCTCCTGAGCTTGAGAACCTCTTTTACCAGAGACTTGACAAGGCACTGGGGTTGGAAACTAAAATGTCATATACATTGTCATGACGTGATAATTGGACACACTGACACTAAAAGATGGCCGTTAATTTCGCTGCACTGTTTTGCTTGTCTCCAACAGGTTTGCTATGTAAGCGTACACTGCTAGCTGATGTCCCCTCCATAGCGTGTGGCTGATCAGTGTGTTTACTGGTCATGTCCTGTCTCACCCACTGTACCAGGAATTGAGCTGTGACTtactcttttttttgttttgttttttgtctgTATTTCATAAAACAAGTTATTAATCCAAATTCATAGGCTACAATTTCCGATGCTCGACGCCATTGTTGAGTTGTTTGTTTGGATGTACAAATAAAGATCATTCATCATT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475252.2 False 1671 mRNA 0.46 3 19329981 19335648
TU1085633 False 1637 lncRNA 0.46 3 19330013 19335646
TU1085634 True 1560 lncRNA 0.47 4 19330013 19335646
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110535436 LOC106578460 coding upstream 19249 19298579 ~ 19310732 (+)
ankrd33ba LOC106578420 coding upstream 485090 18822334 ~ 18844891 (+)
LOC110535429 nup58 coding upstream 527110 18790170 ~ 18802871 (+)
pex2 pex2 coding upstream 1125828 18192624 ~ 18204153 (+)
hnf4g hnf4g coding upstream 1348084 17960186 ~ 17981897 (+)
ssm4 ssm4 coding downstream 6333 19341981 ~ 19345685 (+)
LOC110535439 LOC106578454 coding downstream 41487 19377135 ~ 19385929 (+)
LOC110535440 LOC106590594 coding downstream 65874 19401522 ~ 19414736 (+)
LOC110535441 LOC106578452 coding downstream 79474 19415122 ~ 19426756 (+)
pola1 pola1 coding downstream 131294 19466942 ~ 19561386 (+)
G952064 NA non-coding upstream 14028 19315600 ~ 19315953 (+)
G951627 NA non-coding upstream 32422 19297355 ~ 19297559 (+)
G951624 NA non-coding upstream 35194 19294394 ~ 19294787 (+)
G951623 NA non-coding upstream 37255 19292516 ~ 19292726 (+)
G952201 NA non-coding downstream 264265 19599913 ~ 19600359 (+)
G952208 ndub4 non-coding downstream 276143 19611791 ~ 19613762 (+)
G952229 NA non-coding downstream 304993 19640641 ~ 19641471 (+)
chodl LOC106578443 non-coding downstream 348134 19672943 ~ 19684640 (+)
G951511 NA other upstream 202896 19126665 ~ 19127085 (+)
G948710 NA other upstream 2728089 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 2784692 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 2994689 16327393 ~ 16338373 (+)
G948587 NA other upstream 3003574 16323350 ~ 16326407 (+)
phldb2b tcpe other downstream 425617 19740565 ~ 19799150 (+)
tlcd4a LOC106570700 other downstream 3390905 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 4329640 23665288 ~ 23665930 (+)
G956797 NA other downstream 4440124 23775772 ~ 23776845 (+)
G957942 NA other downstream 5264823 24600471 ~ 24601653 (+)

Expression

LOC110535438 Expression in all Baseline Samples

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LOC110535438 Expression in each Bioproject

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LOC110535438 Expression in each Sample
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Co-expression Network