Gene
RNA
| Item | Value |
|---|---|
| gene id | ssm4 |
| gene name | ssm4 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 19341981 ~ 19345685 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| ssm4 | Enables ubiquitin protein ligase activity. Involved in retrograde protein transport, ER to cytosol and ubiquitin-dependent ERAD pathway. Located in nuclear inner membrane. Is integral component of endoplasmic reticulum membrane. Part of Doa10p ubiquitin ligase complex. Human ortholog(s) of this gene implicated in familial adult myoclonic epilepsy 3. Orthologous to human MARCHF6 (membrane associated ring-CH-type finger 6). |
| description |
|---|
| SSM4 protein |
| id | name | namespace |
|---|---|---|
| GO:0008270 | zinc ion binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| NM_001160571.1 | True | 977 | mRNA | 0.47 | 5 | 19341981 | 19345685 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110535438 | NA | coding | upstream | 6333 | 19329981 ~ 19335648 (+) |
| LOC110535436 | LOC106578460 | coding | upstream | 31249 | 19298579 ~ 19310732 (+) |
| ankrd33ba | LOC106578420 | coding | upstream | 497090 | 18822334 ~ 18844891 (+) |
| LOC110535429 | nup58 | coding | upstream | 539110 | 18790170 ~ 18802871 (+) |
| pex2 | pex2 | coding | upstream | 1137828 | 18192624 ~ 18204153 (+) |
| LOC110535439 | LOC106578454 | coding | downstream | 31450 | 19377135 ~ 19385929 (+) |
| LOC110535440 | LOC106590594 | coding | downstream | 55837 | 19401522 ~ 19414736 (+) |
| LOC110535441 | LOC106578452 | coding | downstream | 69437 | 19415122 ~ 19426756 (+) |
| pola1 | pola1 | coding | downstream | 121257 | 19466942 ~ 19561386 (+) |
| hgd | NA | coding | downstream | 252766 | 19598451 ~ 19611053 (+) |
| G952064 | NA | non-coding | upstream | 26028 | 19315600 ~ 19315953 (+) |
| G951627 | NA | non-coding | upstream | 44422 | 19297355 ~ 19297559 (+) |
| G951624 | NA | non-coding | upstream | 47194 | 19294394 ~ 19294787 (+) |
| G952201 | NA | non-coding | downstream | 254228 | 19599913 ~ 19600359 (+) |
| G952208 | ndub4 | non-coding | downstream | 266106 | 19611791 ~ 19613762 (+) |
| G952229 | NA | non-coding | downstream | 294956 | 19640641 ~ 19641471 (+) |
| chodl | LOC106578443 | non-coding | downstream | 338097 | 19672943 ~ 19684640 (+) |
| G951511 | NA | other | upstream | 214896 | 19126665 ~ 19127085 (+) |
| G948710 | NA | other | upstream | 2740089 | 16554200 ~ 16601892 (+) |
| LOC110535387 | LOC106579475 | other | upstream | 2796692 | 16543682 ~ 16565783 (+) |
| LOC110535372 | mynn | other | upstream | 3006689 | 16327393 ~ 16338373 (+) |
| G948587 | NA | other | upstream | 3015574 | 16323350 ~ 16326407 (+) |
| phldb2b | tcpe | other | downstream | 415580 | 19740565 ~ 19799150 (+) |
| tlcd4a | LOC106570700 | other | downstream | 3380868 | 22712577 ~ 22741263 (+) |
| G956728 | LOC106613263 | other | downstream | 4319603 | 23665288 ~ 23665930 (+) |
| G956797 | NA | other | downstream | 4430087 | 23775772 ~ 23776845 (+) |
| G957942 | NA | other | downstream | 5254786 | 24600471 ~ 24601653 (+) |
