LOC110535446 (LOC106578446)


Basic Information

Item Value
gene id LOC110535446
gene name LOC106578446
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 19627035 ~ 19629227 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620438.2
AAAGTTGATGTTTGTGCGAGTTAACTATATTGTTTATATGAAATACCAATGAATCGTGGGGTTCTGGACCTTTATTACTAGCTGTATTTGTAGAGACGTTTTGATTTCGAGTAACTTAGTCACTCGTGCCAGTGAGCGAGGAGCTAGCTAACGCTAACTAGCAGCGATGAGGGAGCCAACGTTAGCTAGATATCTCTGTTTGGTTAATGTATCTAATTTACGCGAAAAACAAATCAGAAGCCGAAAGCCTCAACAGAAGCTGGAGAAGCAAGCAGAGCGAGACGGGCGGAAAGGACGGGACAGGCAGAGCAGTGGCTAATACCCGTGGACTCAGATCACAGCTGAAGGACAGTGTACCGGTGACGGGCATGGGTCCACAGGTTGGGGCTTATGGCGTTCAGGACACACTCAGGAGCGGATTTAGCAGTGTGAAAAATGAGCTGCTTCCCAGCCATGCGTTGGAGCTTTCAGAAAAGAATtTTCAGCTGAACCAGGACAAGATTAACTTCTCTAACCTCAGAAACATCCAGGGCCTCCACGCTCCCCTCAAACTACAGATGGAATACAGGGCAGCCAGACAGATCCAGCGCCTGCCATTCCTGCAGAGCTCACACCTGGCTCTGGACACTCTCAAAGGGAACGATGAGAGCATCAGCTTTGAGGACATCCTCAACGATCCAGCCCAGAGTGAGATGATGGGTGAGCCCCACGTCATGGTGGAGTACAAGCTGGGCATGATGTAAGAGCCGTCCGACCCCAGGACGTTTGTGTTTACCCGCTGTTAACTAGTTACCGTGTGACAATGCATCTGCTTTAGAGATGGTCACTTACTTCCTCATGTGAGACCGCACTCAAAACTTTTGTATCATTGGATTCTTTTGTTTCTAATAAATCCTGTAACTCAACCATGA
>XM_021620439.2
AGACAACGGTAAACGTACTTTCCTTTTTTACTTCCTTCTACTAACCTGGTTGCATTTCTTTCATCTGATTCGGATGTGTCGTAAAACTAACGCAACCCCAACCGGAAGTTTTTTTTAACTGAAAGTGAAAACAGCCTCATCAGAGCGACAATGAATACCCGTGGACTCAGATCACAGCTGAAGGACAGTGTACCGGTGACGGGCATGGGTCCACAGGTTGGGGCTTATGGCGTTCAGGACACACTCAGGAGCGGATTTAGCAGTGTGAAAAATGAGCTGCTTCCCAGCCATGCGTTGGAGCTTTCAGAAAAGAATtTTCAGCTGAACCAGGACAAGATTAACTTCTCTAACCTCAGAAACATCCAGGGCCTCCACGCTCCCCTCAAACTACAGATGGAATACAGGGCAGCCAGACAGATCCAGCGCCTGCCATTCCTGCAGAGCTCACACCTGGCTCTGGACACTCTCAAAGGGAACGATGAGAGCATCAGCTTTGAGGACATCCTCAACGATCCAGCCCAGAGTGAGATGATGGGTGAGCCCCACGTCATGGTGGAGTACAAGCTGGGCATGATGTAAGAGCCGTCCGACCCCAGGACGTTTGTGTTTACCCGCTGTTAACTAGTTACCGTGTGACAATGCATCTGCTTTAGAGATGGTCACTTACTTCCTCATGTGAGACCGCACTCAAAACTTTTGTATCATTGGATTCTTTTGTTTCTAATAAATCCTGTAACTCAACCATGA

Function

NR:

description
proteasome maturation protein-like

GO: NA

KEGG:

id description
K11599 POMP, UMP1; proteasome maturation protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620438.2 False 911 mRNA 0.48 6 19627035 19629023
XM_021620439.2 True 747 mRNA 0.48 6 19627035 19629227

Neighbor

gene id symbol gene type direction distance location
LOC110535445 ndub4 coding downstream 13244 19611791 ~ 19613791 (-)
arxa LOC106578448 coding downstream 40696 19565431 ~ 19586339 (-)
LOC110535442 LOC106578451 coding downstream 192309 19426819 ~ 19434726 (-)
LOC110536577 NA coding downstream 252803 19368562 ~ 19374232 (-)
trnat-agu-4 NA coding downstream 285421 19341541 ~ 19341614 (-)
zmp:0000000991 LOC106578445 coding upstream 13814 19643041 ~ 19660509 (-)
abcc13 LOC106578442 coding upstream 55409 19684636 ~ 19701763 (-)
LOC110535450 tcpe coding upstream 164899 19794126 ~ 19799188 (-)
sema5a LOC106578437 coding upstream 261350 19890577 ~ 20084385 (-)
si:dkey-118j18.2 LOC106578436 coding upstream 478052 20107279 ~ 20118785 (-)
G952393 NA non-coding downstream 65680 19560175 ~ 19561355 (-)
G952407 NA non-coding downstream 72179 19554352 ~ 19554856 (-)
G952366 NA non-coding downstream 130813 19495370 ~ 19496222 (-)
G952255 LOC106578453 non-coding downstream 212299 19401554 ~ 19414736 (-)
G952309 NA non-coding downstream 240111 19386715 ~ 19386924 (-)
G952465 NA non-coding upstream 34548 19663775 ~ 19664043 (-)
G953170 NA non-coding upstream 43308 19672535 ~ 19672769 (-)
G953236 LOC106578440 non-coding upstream 139000 19768227 ~ 19769329 (-)
G953243 NA non-coding upstream 156427 19785654 ~ 19787002 (-)
G953255 NA non-coding upstream 187930 19817157 ~ 19818290 (-)
dap dap other downstream 763260 18849188 ~ 18863855 (-)
G951713 NA other downstream 855452 18769814 ~ 18771583 (-)
G951233 NA other downstream 1029847 18592818 ~ 18597188 (-)
G951234 NA other downstream 1039292 18585893 ~ 18587743 (-)
G954441 NA other upstream 1448423 21077650 ~ 21078658 (-)
G954484 arhgef4 other upstream 1616787 21246014 ~ 21253309 (-)
G954919 NA other upstream 1950356 21579583 ~ 21579828 (-)
G956234 LOC106578494 other upstream 3124053 22753280 ~ 22756973 (-)
G956366 NA other upstream 3377923 23007150 ~ 23043985 (-)

Expression


Co-expression Network