trnac-gca-2


Basic Information

Item Value
gene id trnac-gca-2
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 19629340 ~ 19629411 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnac-gca-2
gggggtatagctcagtggtagagcatttgactgcagatcaagaggtccccgGTTCAAATCCGGGTGCCCCCT

Function

NR:

description
cilia- and flagella-associated protein 157

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnac-gca-2 True 72 mRNA 0.52 1 19629340 19629411

Neighbor

gene id symbol gene type direction distance location
hgd NA coding upstream 18287 19598451 ~ 19611053 (+)
pola1 pola1 coding upstream 67954 19466942 ~ 19561386 (+)
LOC110535441 LOC106578452 coding upstream 202584 19415122 ~ 19426756 (+)
LOC110535440 LOC106590594 coding upstream 214604 19401522 ~ 19414736 (+)
LOC110535439 LOC106578454 coding upstream 243411 19377135 ~ 19385929 (+)
chodl LOC106578443 coding downstream 43532 19672943 ~ 19684640 (+)
plcxd2 LOC106578441 coding downstream 95858 19725269 ~ 19734299 (+)
phldb2b tcpe coding downstream 111154 19740565 ~ 19799150 (+)
mtrr LOC106578438 coding downstream 172326 19801737 ~ 19834454 (+)
LOC110536583 LOC106578430 coding downstream 571789 20201200 ~ 20203760 (+)
G952208 ndub4 non-coding upstream 15578 19611791 ~ 19613762 (+)
G952201 NA non-coding upstream 28981 19599913 ~ 19600359 (+)
LOC110535438 NA non-coding upstream 293694 19329981 ~ 19335648 (+)
G952064 NA non-coding upstream 313387 19315600 ~ 19315953 (+)
G952229 NA non-coding downstream 11230 19640641 ~ 19641471 (+)
G952509 NA non-coding downstream 99072 19728483 ~ 19730374 (+)
G952541 NA non-coding downstream 202515 19831926 ~ 19832237 (+)
G951511 NA other upstream 502255 19126665 ~ 19127085 (+)
G948710 NA other upstream 3027448 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 3084051 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 3294048 16327393 ~ 16338373 (+)
G948587 NA other upstream 3302933 16323350 ~ 16326407 (+)
tlcd4a LOC106570700 other downstream 3097142 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 4035877 23665288 ~ 23665930 (+)
G956797 NA other downstream 4146361 23775772 ~ 23776845 (+)
G957942 NA other downstream 4971060 24600471 ~ 24601653 (+)

Expression


Co-expression Network