XLOC_028359


Basic Information

Item Value
gene id XLOC_028359
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 73430 ~ 74608 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057973
CTTCAACGCTCAGCCGCGCCGCGCCGCTCGCATCGCTCCGGCCGCGCGCGTCTGTGATTCGGGTTGTTCGCGTTGATTCTCCGCTGCAGTTTTTCATCGATTTGATGGTTTCGGTGTTTCAGTGTGACCGCGACATCTCGCCGTCCGTCCGTCGTCTTCCGCTCACAGGAAAAATGCCCGGACGCGTCCAAAACCAAACCCTTCCCCCTTTCCCTCACCCTCCCTCGCGCGCGGCTCGACTCTTTCTCCGGGGCTCTTCAGCTCGCTATTGTTGATTTTCATCGCCCTCGCGTCTCCCTCGGTCTCCACATCCGATCCCTGTGCGCTGGCCTCGGTTTAATGAGAGGAAAAGAGGCGATGTGGCGCGTCGCGGGCGTTCTGGACGCGTGTATCCAGGCGCATTCCAGTGGGACTAGTTTTTCACGCAGCGGTTTGTGCTGCGGCCcgaaacacaaaacaacacaaagcgACAGGAGTTACAGTACACTGCTGATCACCACTGACTCTCAGCTATCCCCATCAGCAGTCCGTGCTGCTCACGACTGTTATAAGCGCATATTTATCAGTCCGCAGATCAGCTAATGTGCAGTTATTTTTagatttcatatttattttgcacataTTAAAGTGTGCAGGAAATCTGTTGTGGATATGAGTTATATCAGTCCAGTTCCCCATATAGACATGTACGATGATGCATTTATAAGTGAGATCTACATATCATGAGAGGTGTTCTACTGAACAGGGCCCTCTTCTGTTTGCACACTGCTAAACACACACCATCACTCAACTCTCTGCAAACATTAGCTTGTGTATCTCATCATGATTACATTATTATTGCACCAAGTAAATGCTAATTAGAGACTACATGAAATCATTTGATCAATAAGATCGTAAAGGGTAATGTGGTGAAACATTATGATAACacagttattattttattcaaatgatGTAAATGTGAAAACTCTTGCTCAGAGTCAGACGATGCTTTAGCGTTCACGCTCATATGCTGATCTGATGATCAAGAAACATGCTCAGAGTACAGCTGTCCTGCTTCAtagaaatgtttagaaatgttttatttgatgGATAAAGCTGTAAGTAACTGCTTTATCTGAAACAGAAATCATTGTAACTTTATAAACGTGTGACTTGATTATTAAATGACCTTGTTCACAG

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0000380 alternative mRNA splicing, via spliceosome biological_process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0006403 RNA localization biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0050657 nucleic acid transport biological_process
GO:0050658 RNA transport biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051236 establishment of RNA localization biological_process
GO:0050684 regulation of mRNA processing biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0015931 nucleobase-containing compound transport biological_process
GO:0051028 mRNA transport biological_process
GO:0048024 regulation of mRNA splicing, via spliceosome biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:1903311 regulation of mRNA metabolic process biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0045292 mRNA cis splicing, via spliceosome biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0071011 precatalytic spliceosome cellular_component
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0030532 small nuclear ribonucleoprotein complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0120114 Sm-like protein family complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0016604 nuclear body cellular_component
GO:0016607 nuclear speck cellular_component
GO:1902494 catalytic complex cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005684 U2-type spliceosomal complex cellular_component
GO:0005686 U2 snRNP cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057973 True 1179 lncRNA 0.46 1 73430 74608

Neighbor

gene id symbol gene type direction distance location
XLOC_028358 NA coding downstream 772 71463 ~ 72658 (-)
XLOC_028357 NA coding downstream 8727 56025 ~ 64703 (-)
XLOC_028356 CU856344.1 coding downstream 20060 48519 ~ 53370 (-)
XLOC_028355 ptpn12 coding downstream 55219 17308 ~ 18211 (-)
XLOC_028354 NA coding downstream 61090 6163 ~ 12340 (-)
XLOC_028360 NA coding upstream 25383 99991 ~ 101377 (-)
XLOC_028361 dusp16 coding upstream 32679 107287 ~ 119689 (-)
XLOC_028362 NA coding upstream 41714 116322 ~ 119194 (-)
XLOC_028363 gpr19 coding upstream 54089 128697 ~ 133492 (-)
XLOC_028364 tbk1 coding upstream 59804 134412 ~ 149334 (-)
XLOC_028373 NA non-coding upstream 318943 393551 ~ 396819 (-)
XLOC_028375 CU855889.2 non-coding upstream 627004 701612 ~ 734347 (-)
XLOC_028376 NA non-coding upstream 649222 723830 ~ 732484 (-)

Expression


Co-expression Network