chodl (LOC106578443)


Basic Information

Item Value
gene id chodl
gene name LOC106578443
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 19672943 ~ 19684640 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935132.1
GAGGTGACAGCTGTGTGTGGTCGATCAGTTGCAGAGGGACTCAGCAacgagagaaggaaagggagggggaTCAATAAGCGCGCCTGTGGGAGCCACTTTcgctgtttcactgtctctgGTGGGCTGTCTGCACGAGGCCAGCCCCCGTTCTTAGAACATTTTCCGGTCCTCGAGCGCGTGAGGGTACCGGTACGAATCCCATTAGAGCATCTTGCTCACTGAAAAGTAAAAACCGGACATTTGGGTGGAAACCATGACAACAGCAGAGACCGGAGACTGAGAGCAGAGTCGCAGTCAACAAACTGGCAGTAGACCGGTGAACTCTGATGTGAGCGAAggagcttttttatttttacaataccATTTTTATTTCAAAGCTCTTTTTCTCTGTCAAGTATGAAATCATCGAAGAAGAGCGCGGAGCAGAATATCCTGAGAGTTCTATGCGGAGTGATGGTCATGGCCTCCAGCGGTCACGGCGCAAGAGTTGTCAGTGGTCAGACGGTGTGTCAGGGAGGGGAGGAGCATCCATGCTATAAGATCGCCTACTTCCGGGAAATGACCAGCCGGATTGCATTCAGCGAGGCCAGAAAGGCATGTGAGATGGACGGAGGGTCGTTGCTGAGTGTAGAGAGCGCTGCGGAGCAGAGACACATAGAACACCTGCTACagGAGCTTCGGACCTCCTCAACAGGAGCAGGGACAGAAACGGCGGAAGGAGCAGGTACCGGTAATGGAGGAATAGCAGACGGTGATTTCTGGATCGGGCTGATGAGGACAgaaggagaacacacacaggaaaacggCGGCTTCGCCTCCTGTCCTGACCTCTACCTCTGGACCGATGGGAGCGTGTCCCAATTCAGGAACTGGTATTTTGACGAGCCGTCGTGCGGAGGGGAGGCGTGTGTAGTGATGTACCACCAGCCTACAGCGCTCCACGGGCTGGGCGGGGCCTACATGTACCAGTGGAATGATGACAGGTGCAACATGAAGCACAACTTCATCTGCAAGTACGAACCAGAGAGCCGTCTGGGGAAGGAGCAGGGGGACAGGCCAGGAGCTCGTGACCCAGATGTGGCGGTGGTGCAGGCAGATGAGGTCAAACAATCCGGACCAAGTGAGGACGACGCCCCACATGTAGTCATAGCTGGATCCTCAGGTGAGAGGTGGAGGTATGCTGCTGGTTTATGTAATCATCCCCACCATCCCTCTGCTGCTGCTCATCCTGGTGGCTTCTGGGACTTGCTGTTTCCAGATGTTTAGTAAGAGCAAACCACGGACCAAAACCAGTGTTAACCACCAATCAACGCTCTGGATCTCCAAGACACCCAAGACAGACAGCATGGAAGTATGAATGGCAGGTTACATCACAAACAAGATAAACAGATTAGGCAGAACTAACTGAATGATACCTCTGTTTCCCTCATACTATCCTTGTTCCAAATACATCTTACTATCCACCTCAACCAATGACCTGCTCTCCTCTTCTGCATTTCCTTTGTTCAATTTGTTCATGTCTCCACCGCTCTGTTGAGTTTTTCCTTatttcctttctcctcccctccacccctcctgtcctgtcctcctgttaATGTGTTCCTGCAAACAAAAATGAAATGACTTAATGGATAATTTGGCAATCCTCGTACCTATCTGATATCAAGGTAAACCTACTGCTGCTGATATCAAGGTATACCTGCTGCTGTTGCCAGGGAGTTTCTGCTGGAATCCCAGTGTCTGTACGCATGTGTGAGTGTGAGCATGCTACCTTGTGTGTacactaatgtgtgtgtgtgtgttacactaaTTGGTTCCAAACAGAGGAAGTAATTAACTATCAGTAATTAAGGGTGGTGCGAGGGGGACCCTGATAAAACAAGGAATTGAACCATCCCCTGTGACCAGGAATAGGGTCAGAGCCACTTAACACATCACACAGATTTACTCCTGAAGAGCAGCACACAGCGAGGTgtaagagaggagggagagcggggagaggagggagaggagggagtgggggaAAAGAGGAACATTTAAGGGAAAGTGAATaaaagataaaaagagagagggaaagaggcagggagggggaAAATAGGGAAATAGGACTTTAAAATGGAAATTGAAGTATGTTGTTTGATCTGCTTCCCGTTGTTCAGGGTTTAGTACTAGCTTTACTCTCTGTTCCCTCACCGGGGAGCTATGTTTCAGACAGATCAGTCAGCTAAATGACTTTCCTAAATGTcctgaaaaataaaaaaagatttccaTGATCCAATCTAATTGAATGCATAATGCCAGTAAATATCTCATGGATGAAACAGTCAGTATTTATCCAATATTTATCACCGCCTGATATGAATACTGTAAGTGCAGTTTTGTGCATGTTACATGGTCTACaatgttatattttatattccGTATAAGCATTGTCTAATGTGAGAGATTATCCACCTGGCTAAATATTGATACATGCCATACATCTCAACTTATCCTCAGATTGTCCTATGTTATTGCTTTTATATGATGGAATATATGAGAGTACTACATGTGTTTTCTTTCAAAGGCAAACACACGTGTAGCGCGCTCAACCATTGAACAAGGTTTTAATAAGGGATTtgtgtatatttcagtgtgtatgtgttggaTGGAGTGTTGTACATACGTTAGGTTCTAGAGTTTCTAGAAACACATGCAGTAGATCAGTGGTACGTATATGAGACTAGGTTCTGGTGATGGTGTGGTACGTTTAGGAGCCTGTGTGTGAATGTCTTGTTAAGAAGTGGCGTGTTTTGTACTCAGCGTTGTGATGCAGTCACTGTCCTGCTAGCATGTCTACCCACAGCCAGAGATGAAAACAGAGTTTATAAAGAGCCTTGTAGAAACTGAAAGATACCTTTTTCACCCATAACTTGTTTTGTGACGAGATAACTCAATAAAAAGCTTTATGTGA
>XM_021620443.2
GTGACAGCTGTGTGTGGTCGATCAGTTGCAGAGGGACTCAGCAacgagagaaggaaagggagggggaTCAATAAGCGCGCCTGTGGGAGCCACTTTcgctgtttcactgtctctgGTGGGCTGTCTGCACGAGGCCAGCCCCCGTTCTTAGAACATTTTCCGGTCCTCGAGCGCGTGAGGGTACCGGTACGAATCCCATTAGAGCATCTTGCTCACTGAAAAGTAAAAACCGGACATTTGGGTGGAAACCATGACAACAGCAGAGACCGGAGACTGAGAGCAGAGTCGCAGTCAACAAACTGGCAGTAGACCGGTGAACTCTGATGTGAGCGAAggagcttttttatttttacaataccATTTTTATTTCAAAGCTCTTTTTCTCTGTCAAGTATGAAATCATCGAAGAAGAGCGCGGAGCAGAATATCCTGAGAGTTCTATGCGGAGTGATGGTCATGGCCTCCAGCGGTCACGGCGCAAGAGTTGTCAGTGGTCAGACGGTGTGTCAGGGAGGGGAGGAGCATCCATGCTATAAGATCGCCTACTTCCGGGAAATGACCAGCCGGATTGCATTCAGCGAGGCCAGAAAGGCATGTGAGATGGACGGAGGGTCGTTGCTGAGTGTAGAGAGCGCTGCGGAGCAGAGACACATAGAACACCTGCTACagGAGCTTCGGACCTCCTCAACAGGAGCAGGGACAGAAACGGCGGAAGGAGCAGGTACCGGTAATGGAGGAATAGCAGACGGTGATTTCTGGATCGGGCTGATGAGGACAgaaggagaacacacacaggaaaacggCGGCTTCGCCTCCTGTCCTGACCTCTACCTCTGGACCGATGGGAGCGTGTCCCAATTCAGGAACTGGTATTTTGACGAGCCGTCGTGCGGAGGGGAGGCGTGTGTAGTGATGTACCACCAGCCTACAGCGCTCCACGGGCTGGGCGGGGCCTACATGTACCAGTGGAATGATGACAGGTGCAACATGAAGCACAACTTCATCTGCAAGTACGAACCAGAGAGCCGTCTGGGGAAGGAGCAGGGGGACAGGCCAGGAGCTCGTGACCCAGATGTGGCGGTGGTGCAGGCAGATGAGGTCAAACAATCCGGACCAAGTGAGGACGACGCCCCACATGTAGTCATAGCTGGATCCTCAGGTATGCTGCTGGTTTATGTAATCATCCCCACCATCCCTCTGCTGCTGCTCATCCTGGTGGCTTCTGGGACTTGCTGTTTCCAGATGTTTAGTAAGAGCAAACCACGGACCAAAACCAGTGTTAACCACCAATCAACGCTCTGGATCTCCAAGACACCCAAGACAGACAGCATGGAAGTATGAATGGCAGGTTACATCACAAACAAGATAAACAGATTAGGCAGAACTAACTGAATGATACCTCTGTTTCCCTCATACTATCCTTGTTCCAAATACATCTTACTATCCACCTCAACCAATGACCTGCTCTCCTCTTCTGCATTTCCTTTGTTCAATTTGTTCATGTCTCCACCGCTCTGTTGAGTTTTTCCTTatttcctttctcctcccctccacccctcctgtcctgtcctcctgttaATGTGTTCCTGCAAACAAAAATGAAATGACTTAATGGATAATTTGGCAATCCTCGTACCTATCTGATATCAAGGTAAACCTACTGCTGCTGATATCAAGGTATACCTGCTGCTGTTGCCAGGGAGTTTCTGCTGGAATCCCAGTGTCTGTACGCATGTGTGAGTGTGAGCATGCTACCTTGTGTGTacactaatgtgtgtgtgtgtgttacactaaTTGGTTCCAAACAGAGGAAGTAATTAACTATCAGTAATTAAGGGTGGTGCGAGGGGGACCCTGATAAAACAAGGAATTGAACCATCCCCTGTGACCAGGAATAGGGTCAGAGCCACTTAACACATCACACAGATTTACTCCTGAAGAGCAGCACACAGCGAGGTgtaagagaggagggagagcggggagaggagggagaggagggagtgggggaAAAGAGGAACATTTAAGGGAAAGTGAATaaaagataaaaagagagagggaaagaggcagggagggggaAAATAGGGAAATAGGACTTTAAAATGGAAATTGAAGTATGTTGTTTGATCTGCTTCCCGTTGTTCAGGGTTTAGTACTAGCTTTACTCTCTGTTCCCTCACCGGGGAGCTATGTTTCAGACAGATCAGTCAGCTAAATGACTTTCCTAAATGTcctgaaaaataaaaaaagatttccaTGATCCAATCTAATTGAATGCATAATGCCAGTAAATATCTCATGGATGAAACAGTCAGTATTTATCCAATATTTATCACCGCCTGATATGAATACTGTAAGTGCAGTTTTGTGCATGTTACATGGTCTACaatgttatattttatattccGTATAAGCATTGTCTAATGTGAGAGATTATCCACCTGGCTAAATATTGATACATGCCATACATCTCAACTTATCCTCAGATTGTCCTATGTTATTGCTTTTATATGATGGAATATATGAGAGTACTACATGTGTTTTCTTTCAAAGGCAAACACACGTGTAGCGCGCTCAACCATTGAACAAGGTTTTAATAAGGGATTtgtgtatatttcagtgtgtatgtgttggaTGGAGTGTTGTACATACGTTAGGTTCTAGAGTTTCTAGAAACACATGCAGTAGATCAGTGGTACGTATATGAGACTAGGTTCTGGTGATGGTGTGGTACGTTTAGGAGCCTGTGTGTGAATGTCTTGTTAAGAAGTGGCGTGTTTTGTACTCAGCGTTGTGATGCAGTCACTGTCCTGCTAGCATGTCTACCCACAGCCAGAGATGAAAACAGAGTTTATAAAGAGCCTTGTAGAAACTGAAAGATACCTTTTTCACCCATAACTTGTTTTGTGACGAGATAACTCAATAAAAAGCTTTATGTGA
>TU1086054
ATAGGGAAATAGGACTTTAAAATGGAAATTGAAGTATGTTGTTTGATCTGCTTCCCGTTGTTCAGGGTTTAGTACTAGCTTTACTCTCTGTTCCCTCACCGGGGAGCTATGTTTCAGACAGATCAGTCAGCTAAATGACTTTCCTAAATGTcctgaaaaataaaaaaagatttccaTGATCCAATCTAATTGAATGCATAATGCCAGTAAATATCTCATGGATGAAACAGTCAGTATTTATCCAATATTTATCACCGCCTGATATGAATACTGTAAGTGCAGTTTTGTGCATGTTACATGGTCTACaatgttatattttatattccGTATAAGCATTGTCTAATGTGAGAGATTATCCACCTGGCTAAATATTGATACATGCCATACATCTCAACTTATCCTCAGATTGTCCTATGTTATTGCTTTTATATGATGGAATATATGAGAGTACTACATGTGTTTTCTTTCAAAGGCAAACACACGTGTAGCGCGCTCAACCATTGAACAAGGTTTTAATAAGGGATTtgtgtatatttcagtgtgtatgtgttggaTGGAGTGTTGTACATACGTTAGGTTCTAGAGTTTCTAGAAACACATGCAGTAGATCAGTGGTACGTATATGAGACTAGGTTCTGGTGATGGTGTGGTACGTTTAGGAGCCTGTGTGTGAATGTCTTGTTAAGAAGTGGCGTGTTTTGTACTCAGCGTTGTGATGCAGTCACTGTCCTGCTAGCATGTCTACCCACAGCCAGAGATGAAAACAGAGTTTATAAAGAGCCTTGTAGAAACTGAAAGATACCTTTTTCACCCATAACTTGTTTTGTGACGAGATAACTCAATAAAAAGCTTTATGTG

Function

NR:

description
PREDICTED: chondrolectin-like

GO:

id name namespace
GO:0007409 axonogenesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935132.1 False 2953 mRNA 0.47 8 19672943 19684640
XM_021620443.2 False 2937 mRNA 0.47 8 19672946 19684640
TU1086054 True 858 lncRNA 0.37 1 19683782 19684639

Neighbor

gene id symbol gene type direction distance location
trnac-gca-2 NA coding upstream 43532 19629340 ~ 19629411 (+)
hgd NA coding upstream 61890 19598451 ~ 19611053 (+)
pola1 pola1 coding upstream 111557 19466942 ~ 19561386 (+)
LOC110535441 LOC106578452 coding upstream 246187 19415122 ~ 19426756 (+)
LOC110535440 LOC106590594 coding upstream 258207 19401522 ~ 19414736 (+)
plcxd2 LOC106578441 coding downstream 40629 19725269 ~ 19734299 (+)
phldb2b tcpe coding downstream 55925 19740565 ~ 19799150 (+)
mtrr LOC106578438 coding downstream 117097 19801737 ~ 19834454 (+)
LOC110536583 LOC106578430 coding downstream 516560 20201200 ~ 20203760 (+)
cbln2b cbln2 coding downstream 810832 20495472 ~ 20499005 (+)
G952229 NA non-coding upstream 31472 19640641 ~ 19641471 (+)
G952208 ndub4 non-coding upstream 59181 19611791 ~ 19613762 (+)
G952201 NA non-coding upstream 72584 19599913 ~ 19600359 (+)
LOC110535439 LOC106578454 non-coding upstream 287014 19377135 ~ 19385929 (+)
LOC110535438 NA non-coding upstream 337297 19329981 ~ 19335648 (+)
G952509 NA non-coding downstream 43843 19728483 ~ 19730374 (+)
G952541 NA non-coding downstream 147286 19831926 ~ 19832237 (+)
G952563 NA non-coding downstream 174187 19858827 ~ 19859054 (+)
G952564 NA non-coding downstream 176770 19861410 ~ 19861642 (+)
G951511 NA other upstream 545858 19126665 ~ 19127085 (+)
G948710 NA other upstream 3071051 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 3127654 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 3337651 16327393 ~ 16338373 (+)
G948587 NA other upstream 3346536 16323350 ~ 16326407 (+)
tlcd4a LOC106570700 other downstream 3041913 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 3980648 23665288 ~ 23665930 (+)
G956797 NA other downstream 4091132 23775772 ~ 23776845 (+)
G957942 NA other downstream 4915831 24600471 ~ 24601653 (+)

Expression


Co-expression Network