LOC110535450 (tcpe)


Basic Information

Item Value
gene id LOC110535450
gene name tcpe
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 19794126 ~ 19799188 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620451.2
ACTTCCCCCTTTTCCTACTTGGTCTCGCCCTCCCCGCCCCGAGATCCTTCTAGAAGTCGCCAGCAGACCAGTGTGACCAGGTGCCTACCAACACTCCACTTTTTCATCGGTGAAAGTCTGAATTTAATCCGTGGACACTTCTAAAGTGTCGCCGTCTTTCGGGCAATATGTCCGCTATGGGGCAACTCGCATTCGATGAGTATGGACGGCCgttcatcatcatcaaggatcaGGATAAGAAGACTCGCTTATCGGGCCTTGACGCACTGAAGTCTCACATCATGGCAGCAAAGGCAGTTGCCTCGACGCTGAGGACCTCTCTAGGACCAAACGGTCTGGACAAGATGATGGTTGACCGGGATGGAGAGGTGACCGTCACCAATGACGGAGCTACCATCCTCAGCATGATGGATGTGGACCACCAGATCGCCAAGCTCATGGTGGAGCTCTCCAAGTCTCAGGACGACGAGATCGGAGACGGGACCACCGGAGTCGTTGTGCTGGCTGGTGCTCTCCTGGAGGAGGCAGAACAGCTGCTGGACAGGGGCATCCACCCCATCCGTATCTCTGACGGTTACGACCAGGCCGCCAAGATCGCCATCGCGCAGTTGGACAAGATCAGCGAGACCTACCCATACGACCCCAGCAACACGGAGCCACTCATCCAGACTGCCATGACCACACTGGGATCCAAAGTGATCAACCGCTGCCACAGACAGATGGCGGAGATTGCAGTGAACGCCGTCCTGACTGTGGCGGACATGAACCGTAAGGACGTGGACTTTGAGCTGATCAAGATGGAGGGCAAGGTGGGAGGCAAGCTGGAGGATACCCAGCTCATCAAGGGAGTCATCATAGACAAGGAGTTCAGCCACCCTCAGATGCCCAagCTCCTGAAAGACACAAAGATGGCTATCCTGACCTGCCCATTTGAGCCCCCTAAGCCCAAGACCAAGCACAAGCTGGACGTGACCTGTGTGGAGGAATACAAGGCCCTGCAGAAGTATGAGAAGGACAAGTTCCTGGAGATGATCAAACAGATCAAAGATACCGGCGCTAACCTGGCCATCTGCCAGTGGGGCTTTGATGACGAGGCCAACCACCTGCTGCTGCAGAATGAACTGCCTGCCATCCGCTGGGTCGGAGGGCCTGAGATCGAGCTGATTGCCATAGCAACAGGGGGCCGCATCGTGCCTCGGTTCTCTGAGCTGACCGCTGAGAAGCTGGGCTCAGCCGGTGTCGTTAAGGAGATCTGCTTTGGCACAACCAAGGACCGCATGCTGGTCATCGAGGAGTGCAAGAACTCCAGGGCAGTCACCATCTTCATCCGTGGAGGAAACAAGATGATCATTGAGGAGGCTAAGCGTGCGCTGCATGATGCACTGTGTGTCATCCGTAACCTGGTCAGAGACAACCGTGTTGTGTACGGGGGCGGAGCCTCTGAGATTTCCTGTGCCCTCGCTGTCAACCAGGCTGCTGACAAGtgccCGTCCCTGGAGCAGTATGCCATGCGTGCTTTTGCTGATGCCCTGGAGGTGATCCCCATGGCCCTGGCAGAAAACAGCGGGCTTAACTCCATCCAGACCATGACAGAGGTCCGCGCCAGGCAGGTCACCGAGAACAACCCCGCCCTGGGCATCGACTGTCTGCACCTCAACACCAATGACATGAAGCAGCAACATgtaattgagactctgcatgggAAAAAGCAGCAGATCTCTCTGGCCACCCAGGTGGTTAAGATGATCTTGAAGATCGATGACATCAGAAGCCCGGGAGAGTCTGAAGATTAAGGACCCCCACCTAGCCAACTACTCCCACTGAGCGCGTGCCAGTCTCAGCCCAGTTTTCTAGGACTCAGCAAACTTCTAATCTAGAATATTCTAGAATGAGGTGTTCTAGAATTACTGCTTTAGAATGTTCTAGAACTCTACTCTGCAGAGTTCTAGAATGTTAAGTGTCCTAGGCCTTTAGGCACTTGTCCAGCACAGTGTCCAACCCTGCGTACTGTTATTTATCATTTGATCCTGAAACCGCCCCTCCTTCAAGCTGAAGTCATCAATAAAATGTTGGTCTGTGACA

Function

symbol description
tcpe toxin coregulated pilus biosynthesis protein E

NR:

description
T-complex protein 1 subunit epsilon

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09497 CCT5; T-complex protein 1 subunit epsilon

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620451.2 True 2082 mRNA 0.54 11 19794126 19799188

Neighbor

gene id symbol gene type direction distance location
abcc13 LOC106578442 coding downstream 92363 19684636 ~ 19701763 (-)
zmp:0000000991 LOC106578445 coding downstream 133617 19643041 ~ 19660509 (-)
LOC110535446 LOC106578446 coding downstream 164899 19627035 ~ 19629227 (-)
LOC110535445 ndub4 coding downstream 180335 19611791 ~ 19613791 (-)
arxa LOC106578448 coding downstream 207787 19565431 ~ 19586339 (-)
sema5a LOC106578437 coding upstream 91389 19890577 ~ 20084385 (-)
si:dkey-118j18.2 LOC106578436 coding upstream 308091 20107279 ~ 20118785 (-)
timm21 timm21 coding upstream 331330 20130518 ~ 20133776 (-)
neto1l neto1 coding upstream 336060 20135248 ~ 20319367 (-)
fbxo15 fbxo15 coding upstream 655592 20454780 ~ 20487396 (-)
G953243 NA non-coding downstream 7124 19785654 ~ 19787002 (-)
G953236 LOC106578440 non-coding downstream 24797 19768227 ~ 19769329 (-)
G953170 NA non-coding downstream 121357 19672535 ~ 19672769 (-)
G952465 NA non-coding downstream 130083 19663775 ~ 19664043 (-)
G952393 NA non-coding downstream 232771 19560175 ~ 19561355 (-)
G953255 NA non-coding upstream 17969 19817157 ~ 19818290 (-)
G953254 NA non-coding upstream 20967 19820155 ~ 19849554 (-)
G953283 NA non-coding upstream 59631 19858819 ~ 19859168 (-)
G953284 NA non-coding upstream 60314 19859502 ~ 19859737 (-)
G953286 NA non-coding upstream 62233 19861421 ~ 19861669 (-)
G952255 LOC106578453 other downstream 379390 19401554 ~ 19414736 (-)
dap dap other downstream 930351 18849188 ~ 18863855 (-)
G951713 NA other downstream 1022543 18769814 ~ 18771583 (-)
G951233 NA other downstream 1196938 18592818 ~ 18597188 (-)
G951234 NA other downstream 1206383 18585893 ~ 18587743 (-)
G954441 NA other upstream 1278462 21077650 ~ 21078658 (-)
G954484 arhgef4 other upstream 1446826 21246014 ~ 21253309 (-)
G954919 NA other upstream 1780395 21579583 ~ 21579828 (-)
G956234 LOC106578494 other upstream 2954092 22753280 ~ 22756973 (-)
G956366 NA other upstream 3207962 23007150 ~ 23043985 (-)

Expression


Co-expression Network