timm21 (timm21)


Basic Information

Item Value
gene id timm21
gene name timm21
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 20130518 ~ 20133776 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620460.2
AAACTCTCTCTCCCATGATTCTTCGCGCTTGTACAGTGACGACATGTATGCGCCGGAGGTTCAACAGCAAGCTCCCTAACTCAACGCTGACAGTCTTGCAAGTACTTATTGAAGTATATATTGAATTGTGTTGCAATTAGGTCATTTATATCGTATAATGGTTCGACTTTAGTAACAGTTAATTAATGCTGGGAAATTTTGCGAAATAGGGGCAAGACAGCGTGCGTTTTTTTTGATagctgaagtagctagcaagtcaACGTGAATAGAGGACAACATGGTGTATTCTTTCATACTGAAAGTTGTGCAGCGTAATTTGCGTCAATATCAAACACTGTCAACGCAATCCGTTCTGCGAATATGTAAACGCATGCAGAACAATTTGCACCTTCAGAAACCGTCTACTGCAACATCCAGATTCGTTTTCTATGGGACTGCATATCACTCACCTATTGTGAACAATCTATTTTGTACACGGAGTCGAAGCATTTCTGTCGACACAAGATTGAGaagtaaaggagaagagaaggatggTGGACAGGTGTCAGTACCGAGGCAAGGACCTTCTACTGCACATAAAGTAAAGGAAGCTGGCAAAGACTTTACCTACCTCATAGTTGTGCTGATTGGACTCGGAGTAACAGGTGGGTTGTTGTATGTGGTTTTCCAGGAGCTGTTCTCCTCCTCCAGCCCCAACAAGGTCTACAGCAAAGCCTTCAACAAAACCAGGTTACACCCAGAGGTGATTGGAGTGTTCGGGGAGCCAATCAAGTGCTTCGGTGAAACGTCCCGCCGAGGTAGAAGACAGAAAATCAGtCATGTGGAGTACATGAAAGATGGACTGAAGCACATGAGACTGAAGTTCTACATCCAGGGAGAAGAACCAGGCCGGCAGGGAACTGTGCACACAGAATCTAAAGAGAACCCTGAAACTGGAAAGTTAGAGTTCCGCTACATCTTTGTGGAAGTAGACACTTACCCCAGGAGAACCATTGTCATTGAGGATAACAGATAAGCTGGGGACTGATTCTCAGACCCTGTCTGAAGAGGTGCTGCAGCTGTCTAGCATCACTCAGATTATGTAGGCAATGCATCACTTTGTTGATGAACTTGTTTGTTTCAAAAAGTTTTTTAACAAATGCCAATAAAGTTTTATAGAGTCCGTCGGTGGTTAAACCCAATAATAATTATTGATGGAACCAAGTTCCTATATCTTGTTGTTTAGTATGAGTTTCAGATTTGTTGGGTGATTTAGAAAATGTACTGCCATTGCTGACTTTTCTGAGGACAATTTCCTTATTTTTGAGAACTGAGTTAGTGAGGGTGAAGTATGATCTCTTTTTGACGTGGCTGTTCCCTTCGGAATGCCAATAACTGGTGTTTTAAATTAGCAATGATTTGAAGCTATCCGTTTTAATGCTCCATAGGATAAATGGCTTCTAAAGAATGGTTGACTTTTGTTGTCAAATCACAGAAATGTAATGCTTTTAAAGAAAAGCATCTGATGCAGAGATGTTATTTGTCTATTGACAGTGAAAATGTTCAATGTCTTTGTTCCTGAATCTACTACACTGATTAGAGATATGGAAAACCGTTAAAGATTTTGAATTAACTAAGACTCCTGTATTTTGAGAGCAAATCAATAGAATTGTTTTATGAGTATGTGGAAATACAAAAAAAGTGTGACTTGGTTAAACCCCCAATAATAAAGGATTCACTGGCCATGCGAAGTTA

Function

symbol description
timm21 Involved in mitochondrial cytochrome c oxidase assembly; mitochondrial respiratory chain complex I assembly; and protein import into mitochondrial matrix. Part of TIM23 mitochondrial import inner membrane translocase complex.

NR:

description
mitochondrial import inner membrane translocase subunit Tim21

GO: NA

KEGG:

id description
K17796 TIM21; mitochondrial import inner membrane translocase subunit TIM21

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620460.2 True 1734 mRNA 0.41 6 20130518 20133776

Neighbor

gene id symbol gene type direction distance location
si:dkey-118j18.2 LOC106578436 coding downstream 11733 20107279 ~ 20118785 (-)
sema5a LOC106578437 coding downstream 46133 19890577 ~ 20084385 (-)
LOC110535450 tcpe coding downstream 331330 19794126 ~ 19799188 (-)
abcc13 LOC106578442 coding downstream 428755 19684636 ~ 19701763 (-)
zmp:0000000991 LOC106578445 coding downstream 470009 19643041 ~ 19660509 (-)
neto1l neto1 coding upstream 1472 20135248 ~ 20319367 (-)
fbxo15 fbxo15 coding upstream 321004 20454780 ~ 20487396 (-)
LOC110535458 LOC106578426 coding upstream 609550 20743326 ~ 20747932 (-)
dok6 dok6 coding upstream 701729 20835505 ~ 20916389 (-)
LOC110535463 chst2 coding upstream 930272 21064048 ~ 21066774 (-)
G953378 NA non-coding downstream 128899 20000000 ~ 20001619 (-)
G953286 NA non-coding downstream 268849 19861421 ~ 19861669 (-)
G953284 NA non-coding downstream 270781 19859502 ~ 19859737 (-)
G953283 NA non-coding downstream 271350 19858819 ~ 19859168 (-)
G953254 NA non-coding downstream 280964 19820155 ~ 19849554 (-)
G953513 NA non-coding upstream 129675 20263451 ~ 20263916 (-)
G953549 NA non-coding upstream 202333 20336109 ~ 20336990 (-)
G953579 NA non-coding upstream 241551 20375327 ~ 20375586 (-)
G953591 NA non-coding upstream 256155 20389931 ~ 20390189 (-)
G953597 NA non-coding upstream 263197 20396973 ~ 20397214 (-)
G952255 LOC106578453 other downstream 715782 19401554 ~ 19414736 (-)
dap dap other downstream 1266743 18849188 ~ 18863855 (-)
G951713 NA other downstream 1358935 18769814 ~ 18771583 (-)
G951233 NA other downstream 1533330 18592818 ~ 18597188 (-)
G951234 NA other downstream 1542775 18585893 ~ 18587743 (-)
G954441 NA other upstream 943874 21077650 ~ 21078658 (-)
G954484 arhgef4 other upstream 1112238 21246014 ~ 21253309 (-)
G954919 NA other upstream 1445807 21579583 ~ 21579828 (-)
G956234 LOC106578494 other upstream 2619504 22753280 ~ 22756973 (-)
G956366 NA other upstream 2873374 23007150 ~ 23043985 (-)

Expression


Co-expression Network