XLOC_028360


Basic Information

Item Value
gene id XLOC_028360
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 99991 ~ 101377 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057974
gaAAAGTTcacttagtttatttaaaaaaacaaaaacaagatcaTCTGAATCATTACAACAGCTTATAGACCAGAGGAGGAGCGACGAGgagctgtacacacacacacacacacacacacacacacacacacactaacaacaaCTGGACATCATGGAGAAGCAGACTGATGAGGAGCAGACGATGattaacacacacgcacgcacacacacacacacacacacacacacacacagtgaggaTGCACCGCTCCTGTAAAGTGCAGAAGATGAGTCGCTGGTGTGAGCAGAACCACAGGAACACAGAGCATGGCATTACCCAGAAGCCCTTGCAGAGCAGGCCAGTAAAGAGCGGGAGATTTGGAGAAGCagttactgacacacacacacacacacgcacacacaagtttAGTGATAAAGTGAAGGCACAGACATGCGTAACCAAACACCCAGAGCAAGACTGGTGCATGCTGGGTAAtgtgggggaggggggggggggtctgtgCTGGTGAGTTTCCCTTTATGAACACTCAGAGGATCCAGAAGtgctacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccaatgcatTATGGGAAATCTAAAGCTTAGACCGgagctctctctcacacacacacacacacgtgcgcggCTGCTCGTCCTCTGATAGCTTATAAATACAGGATATGTACAGTGTGCGGTATAAAAATAGCAGAGCTCTTCTGGCACTCATGTAGAAAAGTGGAAAACGGcggcaagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaccgcTCAGGCACGAGTCGCCGCCGTGATTGTGTGTTACGCCAGCAGGTGGGCGGGAGGTGTGTGCTGATTGGCTCCTCCTCGTCTCTCatataaaacagtataaaaataagcGCGCCGCCGCGTCACAGTGTAGAGCCTGCAGGGGGCGCCGCCGCGCGGCTCAGGAACTATTTGGCATGGACACCACACGCGTGTGAGTCAGATTAAGgcagcgtgtgcgtgtgtgtgtgtgtgtgtgggtctgatAAATCTCTCTTCATCAGTGTCCACGTGTGGGTAACCGCGGCAACACTgtatagaaatatataaatatgctcTTCTCTTACTGTACAGCGCCGCCAGAGCCCTCAGCTGTCCTTCAGCGAGACACAGTCACTTATATATATGTACAGAGGCAGTGGGGGCGGGGCCTGGCGCGCAGGGGGCGGGGCTCAGGAGGAGTCTGTGC

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0007498 mesoderm development biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057974 True 1337 lncRNA 0.51 2 99991 101377

Neighbor

gene id symbol gene type direction distance location
XLOC_028359 NA coding downstream 25383 73430 ~ 74608 (-)
XLOC_028358 NA coding downstream 27333 71463 ~ 72658 (-)
XLOC_028357 NA coding downstream 35288 56025 ~ 64703 (-)
XLOC_028356 CU856344.1 coding downstream 46621 48519 ~ 53370 (-)
XLOC_028355 ptpn12 coding downstream 81780 17308 ~ 18211 (-)
XLOC_028361 dusp16 coding upstream 5910 107287 ~ 119689 (-)
XLOC_028362 NA coding upstream 14945 116322 ~ 119194 (-)
XLOC_028363 gpr19 coding upstream 27320 128697 ~ 133492 (-)
XLOC_028364 tbk1 coding upstream 33035 134412 ~ 149334 (-)
XLOC_028365 eps8a coding upstream 50129 151506 ~ 178510 (-)
XLOC_028354 NA non-coding downstream 87651 6163 ~ 12340 (-)
XLOC_028373 NA non-coding upstream 292174 393551 ~ 396819 (-)
XLOC_028375 CU855889.2 non-coding upstream 600235 701612 ~ 734347 (-)
XLOC_028376 NA non-coding upstream 622453 723830 ~ 732484 (-)
XLOC_028383 NA non-coding upstream 798585 899962 ~ 904022 (-)

Expression


Co-expression Network