trpc1 (trpc1)


Basic Information

Item Value
gene id trpc1
gene name trpc1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 21069765 ~ 21117062 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001185053.1
ACCAGAGGACTGTCGGAAGCCTGCGAAGCGGTGCGAAAAAATGGTGCATGTAAACACGTTGATGGAGAGTTCTATTTATGCTCTGACTGCGTGCGGTATGTTTACATCTGAAGAAGAATAGCGTGTGTCAACGGGTTATTACGAGGAAACAACTGGGAAGGTCGTTACGCGCGCCAGACGCCGACGCTGCGTAAAAACGGATGAAACGTTAGCAACACGGATGCGACGACAATAATAGCttacatatatttatttattattccgGGAAGACGTTTACACCTGCCGTTCTTTGGGGGGGAAATACATTAACAGTCTTTTGCAGTATATGTCATCCCATGTGACGGGCTTTCATGGTTAAATGGTCGCTGGCGCCTAGTAGTGGGATGCACATCAGTGTCCTGCCCTACTCCTTCTCCGTCGCAATGGCCGCTCTATATCAGGTCACGGACGTGTCCTCTCCGGATAAATTTCTGGCCCTGAAAGACGTGAGGGAGGTGAAGGAGGAGACTACTCTGGATGAAAAGCTCTTCCTACTGGCCTGTGAGAAAGGTGACTACTACATGGTGAAgagactgctggaggagaagaCAGAGCTCAATATCAACTGTGTAGATGTGCTGGGGAGAGACGCTGTCACCATCTCTATAGAGAACCAAAACCTGGACATCCTTAAGCTTCTGCTGGAGCACGGctgccagGCAACAGATGCTCTGTTAGTGGCCATTGACTCGGAGGTGGTGGGAGCTGTGGACATCCTCCTCAACCATCACCCCAGGAGGTCCTCTAAGCCCTCCATCGCTaaacTGATGCAGCGCATCCAGAACCCCGAGTACTCCACCACCATGGACGTGGCTCCAGTGATCCTGGCGGCCCATAGGAACAACTATGAGATACTGACCATGTTGCTGAAGCAGGATATCTCCCTGCCCAGGCCTCACGCTGTGGGCTGCGAGTGTACTCTCTGTAATGCCAAGAACAAGAAGGACAGCCTACGGCACTCCAGGTTTCGTCTGGACATCTACAGGTGCCTGGCCAGCCCGTCTTTGATTATGCTGACCGAGGAGGACCCCATCCTCAGGGCCTTTGAGCTGAGTGCAGACCTCAGGGAGCTCAGCCTGGTCGAGGTGGAGTTCAgGAATGACTATGAGGAGCTGGCTAAGCAGTGTAAGATGTTTGCTAAGGATCTCCTGGCCCAGGCACGTAACTCCAGAGAACTGGAGGTGATCCTCAACCACATGGCCAATGAAGACACAGTGGACAAGAGAGGCCTGATGGAGGAACGCATGAACCTCAGCCGACTCAAACTAGCTATCAAGTACAACCAGAAAGAGTTTGTGGCCCAGTCCAACTGCCAGCAGTTCCTCAACACCGTCTGGTTCGGCGAGACGGCCAGCTACCGGCGTAAACACACGTGTCTGAAGATGTCCACGGTACTGAGCGTGGCGGTGCTGTGGCCGCTGCTCTCCCTGTGCTACCTAGTGGTGCCGCGCTCCCGCGTGGGCCATATCATCCACACGCCCTTCGTCAAGTTCATCATACACAGTGCCTCCTACTTCACCTTCCTCTTGCTCATCAACCTGTACTCTCTGGTGTACAACGAGGGCAAGAAGAACACCATGGGCCCTGCCCTGGAGATGATCGACTACCTGCTCATACTCTGGATCATAGGGATGGTGTGGTCGGACGTGAAGCGTCTATGGTACGAGGGCTTGGAGGACTTCCTGGATGAGTCGAGGAATCAGCTGAGCTTCGTCATGAACTCTCTCTACCTGTCCACCTTCGCCCTCAAGATAGTGGCTCACAgcaagTTTAAGAACGTGGAGGACACAGAGAGGAAAAATTGGGATGCCTTCCACCCCATCCTTGTGGCTGAGGGGCTGTTTGCCTTCGCTAACGTCCTGAGCTACCTACGACTGTTCTTCATGTACACCACCAGCTCAATACTGGGCCCACTGCAGATCTCCGTTGGCCAGATGCTGCAGGAGTTTGGTAAGTTCCTGGGTCTGTTTCTGCTGGTGCTCATCTCTTTCACCATCGGCCTGACGCAGCTCTACGGGAAGGATCAGAAGGACCCGGCCAAGAGTCCCGCCAAAGACTGTGAGGGCATCTTCTGTCAGCAGCAGAGCAACGACGCCTTCCACACGTTCATGGGAACGTGCTACGCACTGTTCTGGTACATCTTCTCTCTGGCCCACGTGGCTCTCTTCGTGACCCGGATCAACTACACGGAGGAGCTGAGGTCATTTGTGGGAGCCCTCATCGTGGGCACGTACAACATCGTGGTGGTCATCGTTCTCACCAAGCTGCTGGTCGCCATGCTCCACAAGAGCTTCAGGCAGATCGCTAACCACGAGGATAAGGAGTGGAAGTTTGCCCGCGCCAAGCTGTGGCTGAGCTACTTTGACGACAAGTGTACTCTGCCGCCGCCCTTCAACATCCTACCCTCCCCCAAGACTGTGTGTTACCTTCTGACCAGTATGAGTAAATGGATCTGCTCCCACACCTCCACGGGGAAGGTCAAGAGACAGAACAGCCTCAAGGAGTGGAGGAACCTGAAGCGGAAGCGTGATGAGAACTACCAGAAGATCATGTGTTGTCTTGTCCATCGCTACCTGACGTCCACCAGGCAGAAGATGCAGAGCACCGACCAGGCCACCGTAGAGAACCTCAACGACCTGCGGCAGGACCTCTCCAAGTTCCGCAACGAGATGAGAGACCTGCTGGGATTCAGAACCTCCAAGTACGCCATGTTCTACCCCCGGAGCTAAGACTGACCTGATCTGAACCtcaacccaacctcaacccaaccaTGTTCTACCCTTGGAGCTAGAACTGATCTGGTCTCAACCtacacccaacctcaacccaaccaTGTTCTACCCTTGGAGCTGGAACTGATCTGGTCTCAACCTACACCCAACCTCAACCAGCCAGCTAAGACTGGTCTCAACCCCAACATCAACCCCAACCACCTCTGTTAGCTTCTTCACCCAGGGGGTCCTATCTCTGACCCTAGCATGCTCAGAAATGACCTTGTGTCCAGTCACAGAGAGA

Function

symbol description
trpc1 Predicted to enable inositol 1,4,5 trisphosphate binding activity and store-operated calcium channel activity. Acts upstream of or within angiogenesis; filopodium assembly; and vasculogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of cation channel complex. Predicted to be integral component of plasma membrane. Is expressed in bulbus arteriosus; head; integument; and nervous system. Orthologous to human TRPC1 (transient receptor potential cation channel subfamily C member 1).

NR:

description
PREDICTED: short transient receptor potential channel 1

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005262 calcium channel activity molecular_function

KEGG:

id description
K04964 TRPC1; transient receptor potential cation channel subfamily C member 1

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001185053.1 True 3054 mRNA 0.54 13 21069765 21117062

Neighbor

gene id symbol gene type direction distance location
cd226 cd226 coding upstream 236383 20821163 ~ 20833382 (+)
rttn rttn coding upstream 249216 20760571 ~ 20820549 (+)
cbln2b cbln2 coding upstream 570760 20495472 ~ 20499005 (+)
LOC110536583 LOC106578430 coding upstream 866005 20201200 ~ 20203760 (+)
mtrr LOC106578438 coding upstream 1235311 19801737 ~ 19834454 (+)
LOC110535465 LOC106578468 coding downstream 14421 21131483 ~ 21149309 (+)
LOC110535467 arhg4 coding downstream 130761 21247823 ~ 21325738 (+)
fbxo45 LOC106578473 coding downstream 228414 21345476 ~ 21347872 (+)
nrros LOC106578474 coding downstream 234640 21351702 ~ 21357076 (+)
LOC110536585 vav3 coding downstream 306362 21423424 ~ 21550872 (+)
G954005 NA non-coding upstream 1090 21068454 ~ 21068675 (+)
G954003 chst2 non-coding upstream 3083 21064071 ~ 21066682 (+)
G953996 NA non-coding upstream 10036 21059420 ~ 21059729 (+)
G953980 NA non-coding upstream 37223 21032328 ~ 21032542 (+)
G953976 NA non-coding upstream 41353 21028205 ~ 21028412 (+)
G954048 NA non-coding downstream 58847 21175909 ~ 21177113 (+)
G954059 NA non-coding downstream 82912 21199974 ~ 21203342 (+)
G954060 NA non-coding downstream 82997 21200059 ~ 21202150 (+)
G953832 NA non-coding downstream 181490 21298552 ~ 21408884 (+)
phldb2b tcpe other upstream 1300412 19740565 ~ 19799150 (+)
G951511 NA other upstream 1942680 19126665 ~ 19127085 (+)
G948710 NA other upstream 4467873 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 4524476 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 4734473 16327393 ~ 16338373 (+)
tlcd4a LOC106570700 other downstream 1609491 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 2548226 23665288 ~ 23665930 (+)
G956797 NA other downstream 2658710 23775772 ~ 23776845 (+)
G957942 NA other downstream 3483409 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 3677538 24794600 ~ 24795736 (+)

Expression


Co-expression Network