fbxo45 (LOC106578473)


Basic Information

Item Value
gene id fbxo45
gene name LOC106578473
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 21345476 ~ 21347872 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620483.2
ACTGGATTTCGCATTTGTCTTCCCACTTTACCAACCGGGTCTGGGTCCATCGAATTAAATGCCTGACAATATCACCGCCGTGATTTAGCTAGTATTTAGAAATGGTccatttgaatacattttagtTAACAATTTATGCTGTAAAACACTGTTCATCGGTCGTTATTCTCAATTTAGCTAATTATGTCGGGAGCGGCCGCCGGAGGGGCGTCCTCTTGCATTGGCGCAGCCGCTGCCAGTTGTAGCTCAGCTGGGTCGTCCTATGTTGCAGCGGGCGGAGAAGTGGGAATAGCAGGCAGGCTACCTAGTCGGGTTCTGGAGCATGTGTTCTCCTATCTGGACTTGTATGATTTGATGCGGTGCTCGTTGGTGTGCTGGCACTGGAACAACTGCCTCGCCGATGAGAACAGCGAGGTGTGGCGGAGTCTGTGCGCTCGCTCTCTTAGTGAAGAGGCACTGCGCTCCGACATTCTTTGCAATCTGACAACATACAAGGGAAAGCTCAAGTCCTACCTGCACGCTCTGAGTTCCCACGACTGCTCACGCAACGTCTACGTGAAGAAGAACGGTTTCACCCTTCACCGCAACCCCATTGCCCAGAGCACCGACGGAGCCCGCGGCAAGATCGGCTTCTCTGAGGGCCGCCATGCCTGGGAGATCTGGTGGGAGGGGCCCCTGGGGACCGTGGCAGTGATCGGCATTGCCACCAAGCGTGCTGCCATGCAATGCCAGGGCTATGTGGCCCTCCTGGGCAGTGACGACCAGAGCTGGGGCTGGAATCTGGTGGATAACAACCTGCTCCACAATGGGGAGGTCAACGGGAACTTCCCTCAGTGCAACAACGCACCAAAATACCAGATCGGGGAGAGGATACGAGTGATTCTTGACATGGATAACAAGACCTTGGCCTTCGAAAGAGGCTTTGAGTTTCTGGGAGTGGCCTTCAGAGGGCTGCCTAAAGCCTGCCTCTTCCCGGCCGTCTCAGCTGTCTATGGCAACACTGAGGTGACCATGGTCTACCTTGGCAAGCCTCTGGATGGATAGCACCGCCACAACACCCGCTGGTGCCACGTCACATCAGATGTGCCAAGGATAATGACTGATCGTTGACACCGAGAGGATTCTAAACGAACATTCCACAACCACAGGAATGGACTACAAAATCAACATGGATGAGAGTGAACTATTGATGGACAAGAGAATTTGACCAGGGTGGGGGAAGTGATCATTGATGGACAAAAGGGTTTGACTAGGTTTTTGGGAAGTGATAATTGGTGGGGGACTGGGGGCTGTTTCAAAGGTGTTTCTGACTCAATGTGGATCCTATCCACTTCAGCTGCTGGACCATTTTATTTACAGTACGGGAGGActtatttttttaatgttattttatgaAGTAACAACACTGAGTCCTGTACATGCGGACGGTTTTATGATGTCTGTTCCTATGAGGCAAAACCAAATATGAACTGTGGCAAATAAAGACAAAtcataatgtgtgtgtgacactgCAA
>XM_021620482.2
CTGGATTTCGCATTTGTCTTCCCACTTTACCAACCGGGTCTGGGTCCATCGAATTAAATGCCTGACAATATCACCGCCGTGATTTAGCTAGTATTTAGAAATGGTccatttgaatacattttagtTAACAATTTATGCTGTAAAACACTGTTCATCGGTCGTTATTCTCAATTTAGCTAATTATGTCGGGAGCGGCCGCCGGAGGGGCGTCCTCTTGCATTGGCGCAGCCGCTGCCAGTTGTAGCTCAGCTGGGTCGTCCTATGTTGCAGCGGGCGGAGAAGTGGGAATAGCAGGCAGGCTACCTAGTCGGGTTCTGGAGCATGTGTTCTCCTATCTGGACTTGTATGATTTGATGCGGTGCTCGTTGGTGTGCTGGCACTGGAACAACTGCCTCGCCGATGAGAACAGCGAGGTGTGGCGGAGTCTGTGCGCTCGCTCTCTTAGTGAAGAGGCACTGCGCTCCGACATTCTTTGCAATCTGACAACATACAAGGGAAAGCTCAAGTCCTACCTGCACGCTCTGAGTTCCCACGACTGCTCACGCAACGTCTACGTGAAGAAGAACGGTTTCACCCTTCACCGCAACCCCATTGCCCAGAGCACCGACGGAGCCCGCGGCAAGATCGGCTTCTCTGAGGGCCGCCATGCCTGGGAGATCTGGTGGGAGGGGCCCCTGGGGACCGTGGCAGTGATCGGCATTGCCACCAAGCGTGCTGCCATGCAATGCCAGGGCTATGTGGCCCTCCTGGGCAGTGACGACCAGAGCTGGGGCTGGAATCTGGTGGATAACAACCTGCTCCACAATGGGGAGGTCAACGGGAACTTCCCTCAGTGCAACAACGCACCAAAATACCAGTGTAATGGTGTCCGTCCACAGATCGGGGAGAGGATACGAGTGATTCTTGACATGGATAACAAGACCTTGGCCTTCGAAAGAGGCTTTGAGTTTCTGGGAGTGGCCTTCAGAGGGCTGCCTAAAGCCTGCCTCTTCCCGGCCGTCTCAGCTGTCTATGGCAACACTGAGGTGACCATGGTCTACCTTGGCAAGCCTCTGGATGGATAGCACCGCCACAACACCCGCTGGTGCCACGTCACATCAGATGTGCCAAGGATAATGACTGATCGTTGACACCGAGAGGATTCTAAACGAACATTCCACAACCACAGGAATGGACTACAAAATCAACATGGATGAGAGTGAACTATTGATGGACAAGAGAATTTGACCAGGGTGGGGGAAGTGATCATTGATGGACAAAAGGGTTTGACTAGGTTTTTGGGAAGTGATAATTGGTGGGGGACTGGGGGCTGTTTCAAAGGTGTTTCTGACTCAATGTGGATCCTATCCACTTCAGCTGCTGGACCATTTTATTTACAGTACGGGAGGActtatttttttaatgttattttatgaAGTAACAACACTGAGTCCTGTACATGCGGACGGTTTTATGATGTCTGTTCCTATGAGGCAAAACCAAATATGAACTGTGGCAAATAAAGACAAAtcataatgtgtgtgtgacactgCAA

Function

NR:

description
PREDICTED: F-box/SPRY domain-containing protein 1-like isoform X1

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10319 FBXO45; F-box protein 45

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620483.2 False 1514 mRNA 0.51 3 21345476 21347872
XM_021620482.2 True 1534 mRNA 0.51 3 21345477 21347872

Neighbor

gene id symbol gene type direction distance location
LOC110535467 arhg4 coding upstream 19738 21247823 ~ 21325738 (+)
LOC110535465 LOC106578468 coding upstream 196167 21131483 ~ 21149309 (+)
trpc1 trpc1 coding upstream 228414 21069765 ~ 21117062 (+)
cd226 cd226 coding upstream 512094 20821163 ~ 20833382 (+)
rttn rttn coding upstream 524927 20760571 ~ 20820549 (+)
nrros LOC106578474 coding downstream 3830 21351702 ~ 21357076 (+)
LOC110536585 vav3 coding downstream 75552 21423424 ~ 21550872 (+)
col11a1a col11a1 coding downstream 867987 22215859 ~ 22304517 (+)
olfm3a olfm3 coding downstream 978217 22326089 ~ 22356408 (+)
LOC118937330 NA coding downstream 998121 22345993 ~ 22349256 (+)
G954106 NA non-coding upstream 8344 21335163 ~ 21337132 (+)
G954059 NA non-coding upstream 142134 21199974 ~ 21203342 (+)
G954060 NA non-coding upstream 143326 21200059 ~ 21202150 (+)
G954048 NA non-coding upstream 168363 21175909 ~ 21177113 (+)
G953836 sh3glb1 non-coding downstream 28233 21376105 ~ 21395909 (+)
G954194 NA non-coding downstream 151519 21499391 ~ 21501315 (+)
G954212 NA non-coding downstream 197029 21544901 ~ 21552937 (+)
G954709 NA non-coding downstream 229263 21577135 ~ 21577541 (+)
G954710 NA non-coding downstream 229732 21577604 ~ 21577865 (+)
phldb2b tcpe other upstream 1576123 19740565 ~ 19799150 (+)
G951511 NA other upstream 2218391 19126665 ~ 19127085 (+)
G948710 NA other upstream 4743584 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 4800187 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 5010184 16327393 ~ 16338373 (+)
tlcd4a LOC106570700 other downstream 1378681 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 2317416 23665288 ~ 23665930 (+)
G956797 NA other downstream 2427900 23775772 ~ 23776845 (+)
G957942 NA other downstream 3252599 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 3446728 24794600 ~ 24795736 (+)

Expression


Co-expression Network