LOC110535481 (LOC105022597)


Basic Information

Item Value
gene id LOC110535481
gene name LOC105022597
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 22392395 ~ 22405735 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935185.1
CTATCTTTGTCAGCCTGGACCCTGCCAAGGGCTTCCCCAAGTGCCCTGGCATCGagtagaagagagggatgagggagagaaattgAGGGTGTTGTGTTTCTGGAGTGTCTGTGGTGCTACTCTCAGATGAACAGATGAGCAGTGAGggcagggagtgagagaaagagagatggagggagggaaggagtgaaggagggagaggaggggttcAGTGCTGGGATTGTCACGGGAAGGGAAGGAACTGCTCCTTCAgagtgtgtgaggtgtgaggGGCACTTGTACTAAGGAACATAGGAGAAGGACATACTGTATAAACCTACAATATGAGCAGAACCACCTTCTTTGAGgtggaggttctggatggcaggaccAGGCAACAGCTTTGTTTTCTAGATAAGGTGGAGCCCCATGCTACAATAGGAGAAATCAAGAGTCTTTTTCACAAGTCATatcAACAGTTGTATCCAGCCAGACAGGACCTCAAGCTCGACCCCAAAGGAAAATCACTGAGGGATGACGATGTATTACAAAACCTACCAGTTGGGACCACAGCAACCATATATTTTAAGGACCTGGGCCCACAGGTTGGGTGGACAATGGTGTTTTTAGCGGAGTACCTTGGTCCTCTGTTTATCTACCTCCTGTTCTATTTCCGAGCTCCGTACATCTACTCACACCAGGATGTGTTCACCTCCAGCCCCTACTCAGTGGTCACaCTAGCCTGTGCCTGTCACACCTGCCACTACATCAAGAGGTTGATTGAGGCTATCTTTGTGCACCGGTTCTCCCATGGTACCATGCCTCTCAGGACTATAGTCAGGAACTGTGTATATTACTGGGCCTTCTCAGCATGGTTGGCCTTCTACATCAACCATCCACTGTATACACCACCATCGTATGGGGATATGCAAGTGAACTATGCACTGGCCATATTTGTGCTCTGTGAGTTAGGGAATTTCTCCATTCACGTGGCCCTGAATAACCTCAAGGCAGAAGGTGGGCCCAAGTGCAGAAGGTTCCCTCACCCGACGAAAAACCCATTCACATGGCTGTTCTTCTTCGTGTCCTGCCCCAATTATACCTACGAGGTAGGAGCCTGGGCGAGTTTCTCTGTCATGACCCAGTGTCTACCAGTGGCCTTGTTCACCTTCTTAGCTTTCATCCAGATGACCATCTGGGCCAAAGGGAAGCATAAAACCTACTCCAGGGAGTTTAAGGACTACCCTCACCTGCGCATGCCAATCATCCCGCTCCTCCTCTGACCACGCTACAAAGGTTTACCATTCGGACTGGAGCATTGGGGTCTTCAGCCTGCTTGAAAGGTTGTGATCATTAGTGGGTTACTGTGTTTCTCACAAAGCAAGAAGACCCACTGCTCCTTCATCTATCGCCATGGCAATGGTCTGTTATCTTTTCAACAACCACTATGCAAGGTTAGACTATGCCATTGTCTTAGAAAGAGGAGGAAACCAACCGGGTTAAAGATTCATAGACATGGAGTATTGTTGACGTGTGGATGAACTTTTAATGAATATATAATAGTGAATTGACAGAAAGGAATGTCTCATCTCAACAATACTGTTGATGAACTGCTAATGATCATTTCTGCATTGATAATGTTTAGTTCAATCATTGAAACACAGCCTTATTAAGGAGTCATTGGTATTAGTCCTGTTACTGATCATGTACAGTGCAGCTACTGAATGTTCCGACAATTGTTGGCATTCTTAGTCTACAGAGTGGCAATCATCTGAAAACTATGAAGTTATGAATACATGATTGAAGTTCTATATAATCTACCATGTTATTTAGTAATAAGTTATTGTCATTCCCTagaggaaatgtgtgtgtgtgtgtaacttgaTATGATATACCTGCTAAGGAAGTCTTTATAATGACTGAAGTGTAACGGGGCTATTTTCAGTAGGGAAAGCTGAGTTCTAGAACCAGGAGATGGAACACAGAATTAGGAGATGTCTAAGTTTGCAAGCTGATTATTTCCCCCTCTACAATGAAGCTGTAGATGTTTGAATGTAACGAACAACCTGATGCTTTTACCTTTGTCAGACAGTTGAGGATAATTCAGTAATGTATTACTTTATATATCGTTCAAGATAACTACAATCTGTCAAATTCTCAGGTGTTACTAGATGCAACAGGTACCTGTTTATATACTGTACAAATGATAGCCAAACTCGTTTTGTATACAAAGTGTAAATATCAAATAAATAATTTCGATAATTTCAAAGATAA

Function

NR:

description
very-long-chain enoyl-CoA reductase-like

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG:

id description
K10258 TER, TSC13, CER10; very-long-chain enoyl-CoA reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935185.1 True 2253 mRNA 0.44 12 22392395 22405735

Neighbor

gene id symbol gene type direction distance location
olfm3a olfm3 coding upstream 35987 22326089 ~ 22356408 (+)
LOC118937330 NA coding upstream 43139 22345993 ~ 22349256 (+)
col11a1a col11a1 coding upstream 87878 22215859 ~ 22304517 (+)
LOC110536585 vav3 coding upstream 841523 21423424 ~ 21550872 (+)
nrros LOC106578474 coding upstream 1035319 21351702 ~ 21357076 (+)
LOC110535485 LOC106578486 coding downstream 135864 22541599 ~ 22554183 (+)
LOC110535486 LOC106578488 coding downstream 151374 22557109 ~ 22564107 (+)
tlcd4a LOC106570700 coding downstream 306842 22712577 ~ 22741263 (+)
LOC110535493 LOC106578494 coding downstream 344988 22750723 ~ 22756977 (+)
ptbp2a ptbp2 coding downstream 545426 22951161 ~ 22966803 (+)
G955463 NA non-coding upstream 30502 22361676 ~ 22361893 (+)
G955462 NA non-coding upstream 31874 22360201 ~ 22360521 (+)
G955349 NA non-coding upstream 143081 22248144 ~ 22249314 (+)
G955329 NA non-coding upstream 180251 22211916 ~ 22212144 (+)
G955239 NA non-coding upstream 256638 22135522 ~ 22135757 (+)
G955488 NA non-coding downstream 928 22406663 ~ 22407684 (+)
G955490 LOC108412106 non-coding downstream 2579 22408314 ~ 22413868 (+)
G955498 LOC104966354 non-coding downstream 15078 22420813 ~ 22423206 (+)
G955501 LOC108235267 non-coding downstream 19196 22424931 ~ 22426285 (+)
G955531 NA non-coding downstream 72716 22478451 ~ 22481603 (+)
phldb2b tcpe other upstream 2623042 19740565 ~ 19799150 (+)
G951511 NA other upstream 3265310 19126665 ~ 19127085 (+)
G948710 NA other upstream 5790503 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 5847106 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 6057103 16327393 ~ 16338373 (+)
G956728 LOC106613263 other downstream 1259553 23665288 ~ 23665930 (+)
G956797 NA other downstream 1370037 23775772 ~ 23776845 (+)
G957942 NA other downstream 2194736 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 2388865 24794600 ~ 24795736 (+)

Expression


Co-expression Network