LOC110535485 (LOC106578486)


Basic Information

Item Value
gene id LOC110535485
gene name LOC106578486
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 22541599 ~ 22554183 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620509.2
CCCTGCAACCGGAACATCCGGTTGTTGGGGACTTGGCAGAGAGGCTACAAATGGAGCAGCCTACAGCTACTTTCCTTGAAATATAGTTGCCAACTCTGCGGCTCAGCTGGTACTCTAGAAAACATGGCAGCCGTCAGTAAATATTTTACAGCTAAAAACTCCTCGATAGCTGGGGGAGTCTTACTCGCTTTATGCATCCTGAagcaaagaagaagaggaggcaAGTCAAGCGGTACAAAAGGGGGCTCAGAACTGGTGTTGAGCAATGAAGACAAAGCAGCTAAGAAAGACCGGGCGGCGGTGGACTATGTCTTCTTCCTCAGAATCAGCAAGATCCTCCGGATCATGGTGCCTCGATGGTTCTGCAAAGAGACTGGATACCTTCTCTTCATCGCTGCTATGCTGGTGACCCGGACATACTGTGACGTATGGATGATCCAGAACGGAACCATGATTGAAAGTGCAATTATCGTTCGCAACAACGCCGATTTCAAGAACTACTTGTTCAAGTGTTGCAAAGCTATGCCAATTTTTGCCTTGGTGAATAACCTCTTGAAGCTGGGTCTGAACGAGCTGAAGCTGAAGTTCAGAGAGAGGCTGACTAAACATCTCTACGACGAGTACCTCAAAGGATACACGTACTACAAAATGGGCAACCTGGATAACCGCATTGCCAACGCTGACCAGCTGCTGACTCAAGACGTAGAGAAGTTTTGTAACAGTGTGGTTGACCTCTACTCCAATCTCAGCAAGcctctctTGGACATTGGACTGTACATCTTCAAGCTGACGTCTTCCATCGGAGCCCAGGGCCCATCGAGTATGATGGCCTACCTGCTGATCTCAGGCCTGTTCCTGACCAGACTGCGGAAGCCCATCGGTAAGATGACTGTCATTGAGCAGCGCTACGAGGGAGAGTACCGATATGTCAACTCACGACTCATCACCAACAGTGAGGAGATTGCCTTCTACAATGGCAatatgagagagaaacagacaattCATTCAACATTTAAGAAATTGGTCGACCATTTGCATAAGTTCATCTTCTTCCGCTTCTCTATGGGCTTTTTAGACAGCATGGTCGCCAAGTACATGGCCACCGTGGTGGGCTACCTGGTGGTGAGTCGGCCCTTCCTCAACCTGTCCGACCCCCGCCACATGAACAGCACCCAAGCTGAGCTGATGGAAGACTATTACCAGAGTGGCAGGATGCTGCTGAGTCTGGCCCAGGCTCTGGGAAGGATCGTACTGGCTGGCAGAGATATGACCAGGCTTTCCGGGTTCACCATGCGTATCACTGAGCTCAGGAAGGTCCTGAAAGAACTGAACTCTGGGAAATACGAGCGTACCATGGTCTCCCATCAGAACAAAGAATCATTAGGTGTAGAAAGAGTCACACTGGTCCCGGGCAGCGGACAGATCATCAACGTAGACCACATCATCAAGTTTGAACACACACCACTAGCAACACCCAATGGAGATGTACTGATCAAGGACCTGACCTTTGAAgTGCGGTCTGGTACCAACGTGTTAGTGTGTGGGCCCAATGGCTGTGGCAAGAGCTCACTCTTCAGAGTACTGGGAGAGCTCTGGCCTCTGTTCGGAGGGCAGCTGACCAAGCCTGAGCGAGGGAAGCTCTTCTATGTTCCTCAGAGACCCTACATGCCCATTGGCACGTTGAGGGATCAGGTGATCTACCCTGACACCTATGAGGAGCAAAAGAGGAAAGGCATCTCTGACCAGGTGCTGAAGGAGTACCTGGGCAACGTCCAGTTAGGTCACATCCTGGACAGAGAGGGGACTTGGGACACCGTGCAGGACTGGATGGATGTCCTCAGTggaggagagaagcagaggaTGGCGatGGCAAGGTTGTTCTACCACAAACCTCAGTTTGCCATCTTGGATGAGTGCACCAGTGCTGTGAGTGTAGATGTGGAGGACTTCATCTACAGTCACTGCAGAACGGTTGGCATCAGTCTGTTCACTGTCTCTCACAGAAAATCTTTGTGGAAACACCATGAGTACTACCTTCACATGGACGGAAGAGGGAACTACGACTTCAAACCTATCACTGAGGAGACCATAGAGTTCGGCTCCTAGAAGAGCGTCAacgacacacacaccatcctccgGCCTGAAGAAAGGCGCCCACTAATTCTGCACTTAAAACAAACCTAGACTACTGTTTTTAATCAATTGTAACCTCTTTTGTTGTTTTCTTTTGACAAGATGTATTTAAATGATCAGATATGTTAGTCTGGTTAAGTAAACATTTGTCAACGGTGATTGTATGTGtttgttaaacgctctacaacaacgctttcttagtgtccaacaagctttttctgcccttaaccttgttctgaacacctccaaaacaaaggtcatgtggtttagtaagaagaatgcccctctccccaccagtGTGATttctacctctgagggtttagagcttgaggtagtcacctcatagaAGTACTTGgtagtatggctagacggtacactgtccttctctcagcatatatcaaagctgcaggctaaagttaaatctagacttgctTTTTCCTCTATTGTAaatgctcctctttcaccccagctgccaaactaatcctgattcagatgaccatgctAGACTATGGAGAcgtcatttatagatcggcaggtaagggtgctctcgagcggttagatgttctttaccatttggccatcagatttgccaccaatgcaccttataggacacatcactgcactctatactcctctgtaaactggtcatctctgtatacctgtcgcaagacccactggttgatgcttgtttataaaaccctcttaggcctcactccccctatctgagatatctcctgcagccctcatcctcaacatacaacacctgttctgccagtcacattctaaaggtccccaaagcacacacatccctgggtcgctcctcttttcagtttgctgcagctagcgactggaacgagctgcaaaaaacactcaaatttgaccatttttatctctcttcattcaaagagTCAATCATGGATACTTACAgatgtggctgctttgcgtgacatattgttgtctctaccttcttgccctttgtgttgttgtctgtgcccaataggggcggcaggtagcctggtggttagagtgttgggccagtaactgaaaggttgctggatcgaatccctgaggtgccaagataaaaaaaaatcctgcttCTGGGCATGGCAGTGAATCCCCTGTTCCCCAATCATCAAAAACATGGATGTTGAtcaaggcagccccccgcacctctctgattctgaGCGGTTGGCTTAAATGTGGAAGacccatttcagttgaaggcattaagttgtacaactgactaggtatccccctttcccaataatgtttgcaccatgttttgtgctgttgctatgttgtgttgctacaatgCTGTTTCCATGTGATGCTGCCacgctatgttgtcttaggtctctctttatgtagtgttgtggtgtctttcttgttgtgatgtgtgttttgtcctattttatttttaatcccatccCCCGTcaccgcaggaggccttttggtaggccgtcattgtaaataagaatttgctcttaactgacttgcctagttaaataaataattatataaaAATA

Function

NR:

description
ATP-binding cassette sub-family D member 3-like

GO: NA

KEGG:

id description
K05677 ABCD3, PMP70; ATP-binding cassette, subfamily D (ALD), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620509.2 True 3659 mRNA 0.47 20 22541599 22554183

Neighbor

gene id symbol gene type direction distance location
LOC110535481 LOC105022597 coding upstream 135864 22392395 ~ 22405735 (+)
olfm3a olfm3 coding upstream 185191 22326089 ~ 22356408 (+)
LOC118937330 NA coding upstream 192343 22345993 ~ 22349256 (+)
col11a1a col11a1 coding upstream 237082 22215859 ~ 22304517 (+)
LOC110536585 vav3 coding upstream 990727 21423424 ~ 21550872 (+)
LOC110535486 LOC106578488 coding downstream 2926 22557109 ~ 22564107 (+)
tlcd4a LOC106570700 coding downstream 158394 22712577 ~ 22741263 (+)
LOC110535493 LOC106578494 coding downstream 196540 22750723 ~ 22756977 (+)
ptbp2a ptbp2 coding downstream 396978 22951161 ~ 22966803 (+)
snx7 snx7 coding downstream 775567 23329750 ~ 23365999 (+)
G955531 NA non-coding upstream 59996 22478451 ~ 22481603 (+)
G955481 NA non-coding upstream 87277 22394729 ~ 22454322 (+)
G955501 LOC108235267 non-coding upstream 115314 22424931 ~ 22426285 (+)
G955498 LOC104966354 non-coding upstream 118393 22420813 ~ 22423206 (+)
G955490 LOC108412106 non-coding upstream 127731 22408314 ~ 22413868 (+)
G955585 NA non-coding downstream 6283 22560466 ~ 22561104 (+)
G955575 NA non-coding downstream 17750 22571933 ~ 22626610 (+)
G955741 NA non-coding downstream 273822 22828005 ~ 22828323 (+)
G955785 NA non-coding downstream 338897 22893080 ~ 22976240 (+)
G955814 NA non-coding downstream 425950 22980133 ~ 22980463 (+)
phldb2b tcpe other upstream 2772246 19740565 ~ 19799150 (+)
G951511 NA other upstream 3414514 19126665 ~ 19127085 (+)
G948710 NA other upstream 5939707 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 5996310 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 6206307 16327393 ~ 16338373 (+)
G956728 LOC106613263 other downstream 1111105 23665288 ~ 23665930 (+)
G956797 NA other downstream 1221589 23775772 ~ 23776845 (+)
G957942 NA other downstream 2046288 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 2240417 24794600 ~ 24795736 (+)

Expression


Co-expression Network