LOC110535486 (LOC106578488)


Basic Information

Item Value
gene id LOC110535486
gene name LOC106578488
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 22557109 ~ 22564107 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935191.1
GGGAAGTTTTATAGTTGGACTGTAAATACGTCCAGGTGATACATTTAGGTTGTATCTGCTGCTACTGGTGTGCTTACATTCATTCTGTCCTCACTGCCAACCACTGGGCCAAGCATCGCTGCGGTTCAttgggctgggggactggggagGACTCCCGCTCTTCCCTTACTACACCCCTCATGAGGAGGCCATCGCTGAGGAGATGTCCTGGGCAGCCCAGACCCTGGGACTGGACTTTGTCCTCAGTCTGGGAGACCACTTCTACTATGGCGGAGTGAAGGACGTGGATGACCCACGCTTCAAGCACACCTTCGAGCGTGTCTTCTCTCAACCATCACTCGTTGACGTCCCATGGTACCTTGTGGCGGGAAACCACGACCATCTAAAAAATGTGTCTGCTCAGATTGCTTACTCCAACAGATCGGGGAGATGGAGGTTCCCTGAGTTGTACTATGAGCTCCAGTTCAAGGTTCCCCAGAGTAACGTGTCTGTGACCGTCCTGATGGTTGACACCGTAGTGCTCTGTGGGAACACCTATGAGGGGACCCAGCCCAAAGGAGAAGAGGACCCGGAGGCTGCTGCCAAGCAGTTCGACTGGATCAACTCCAGACTGGCAAACAGCAAGTCAGAGTTCATTGTGGTAGCTGGTCACTATCCTGTGTGGTCCATTGGTGATCACGGCCCCACTAAGTGTCTTGTGGATAGACTACGGCCACTGCTGAAGAAGTACGATGTCACAGTCTACCTGAGTGGTCATGACCACAGTATACAGTTTATCAGAGAGGATGATGGGAGTTCTTATGTGGTCAGCGGGAGTGGGGCCTTTACAGAAATGTCCATTCATAACATCAACAGCTTCCCGACTTCATGGCAACGGTTCTCCAACGCTGTCAACCATACATCCGGTGGGTTCGCTTACTTTGAAGTCACAGAGAACAATATGACTGTCAGCTACATCCAGACTGATGGGAAATGTGTTTAccaaacaggactggcaaaacGCAAAGTCTGACACAGGCAATGTCATCACGAGATAGTCAACAATCAACTACTGCAGGCTAATATGCTGACTGTTTCTAAGAGCATACTGTATCTTTAAGCAGTTTACAAAACTGAAAACATCTCATTCTAGTTCAATTCATCTTTTAACTCTGTTTTCTTTTGGTTAATAATTGTCTTGGACTGTAACAAAACAATGTTTTATATGATTTTCTCTGAATTGCAATTCTAATGTAATTTTAATGTTTTGAATGTGTTCTATTTTTCTTGAAAATCCACGCCCACAAAAATTGTGTGAAATAATTGTGAGTTGAATGACCTGTAGATGGTGCTGGTTAGATCTTTTTGCAGGAACTATACAAGACTGATGTCTGCTGTGATAAAGATGACGTAACTTGAGCATTCTCACCAGAGCGTAGTCACATTAACATAACATACCCCACTATTCCACGATGTCTCATATCAAAGATAAACACATTACCACAAATGAATGGTAAGACTTTATTATGAAAATGCCAATAAAATCAAACAAGAGTACCATATTAGTACCAGA
>XM_036935190.1
TTGGACTGTAAATACGTCCAGGAACAGTTCTAAAGAGAACAAATGGAAATCTTCTTCCTGTAACAGCGTGTGACACACTGACCAACTGCTCAACTGTTCGTTTTCTTTGTTAGTAAGTCTATTCCTCTCCACTCTGGCATAATGGATAGGTTGTATCTGCTGCTACTGGTGTGCTTACATTCATTCTGTCCTCACTGCCAACCACTGGGCCAAGCATCGCTGCGGTTCAttgggctgggggactggggagGACTCCCGCTCTTCCCTTACTACACCCCTCATGAGGAGGCCATCGCTGAGGAGATGTCCTGGGCAGCCCAGACCCTGGGACTGGACTTTGTCCTCAGTCTGGGAGACCACTTCTACTATGGCGGAGTGAAGGACGTGGATGACCCACGCTTCAAGCACACCTTCGAGCGTGTCTTCTCTCAACCATCACTCGTTGACGTCCCATGGTACCTTGTGGCGGGAAACCACGACCATCTAAAAAATGTGTCTGCTCAGATTGCTTACTCCAACAGATCGGGGAGATGGAGGTTCCCTGAGTTGTACTATGAGCTCCAGTTCAAGGTTCCCCAGAGTAACGTGTCTGTGACCGTCCTGATGGTTGACACCGTAGTGCTCTGTGGGAACACCTATGAGGGGACCCAGCCCAAAGGAGAAGAGGACCCGGAGGCTGCTGCCAAGCAGTTCGACTGGATCAACTCCAGACTGGCAAACAGCAAGTCAGAGTTCATTGTGGTAGCTGGTCACTATCCTGTGTGGTCCATTGGTGATCACGGCCCCACTAAGTGTCTTGTGGATAGACTACGGCCACTGCTGAAGAAGTACGATGTCACAGTCTACCTGAGTGGTCATGACCACAGTATACAGTTTATCAGAGAGGATGATGGGAGTTCTTATGTGGTCAGCGGGAGTGGGGCCTTTACAGAAATGTCCATTCATAACATCAACAGCTTCCCGACTTCATGGCAACGGTTCTCCAACGCTGTCAACCATACATCCGGTGGGTTCGCTTACTTTGAAGTCACAGAGAACAATATGACTGTCAGCTACATCCAGACTGATGGGAAATGTGTTTAccaaacaggactggcaaaacGCAAAGTCTGACACAGGCAATGTCATCACGAGATAGTCAACAATCAACTACTGCAGGCTAATATGCTGACTGTTTCTAAGAGCATACTGTATCTTTAAGCAGTTTACAAAACTGAAAACATCTCATTCTAGTTCAATTCATCTTTTAACTCTGTTTTCTTTTGGTTAATAATTGTCTTGGACTGTAACAAAACAATGTTTTATATGATTTTCTCTGAATTGCAATTCTAATGTAATTTTAATGTTTTGAATGTGTTCTATTTTTCTTGAAAATCCACGCCCACAAAAATTGTGTGAAATAATTGTGAGTTGAATGACCTGTAGATGGTGCTGGTTAGATCTTTTTGCAGGAACTATACAAGACTGATGTCTGCTGTGATAAAGATGACGTAACTTGAGCATTCTCACCAGAGCGTAGTCACATTAACATAACATACCCCACTATTCCACGATGTCTCATATCAAAGATAAACACATTACCACAAATGAATGGTAAGACTTTATTATGAAAATGCCAATAAAATCAAACAAGAGTACCATATTAGTACCAGA
>XM_021620510.2
TCCAGGTGATACATTTAGGAACAGTTCTAAAGAGAACAAATGGAAATCTTCTTCCTGTAACAGCGTGTGACACACTGACCAACTGCTCAACTGTTCGTTTTCTTTGTTAGTAAGTCTATTCCTCTCCACTCTGGCATAATGGATAGGTTGTATCTGCTGCTACTGGTGTGCTTACATTCATTCTGTCCTCACTGCCAACCACTGGGCCAAGCATCGCTGCGGTTCAttgggctgggggactggggagGACTCCCGCTCTTCCCTTACTACACCCCTCATGAGGAGGCCATCGCTGAGGAGATGTCCTGGGCAGCCCAGACCCTGGGACTGGACTTTGTCCTCAGTCTGGGAGACCACTTCTACTATGGCGGAGTGAAGGACGTGGATGACCCACGCTTCAAGCACACCTTCGAGCGTGTCTTCTCTCAACCATCACTCGTTGACGTCCCATGGTACCTTGTGGCGGGAAACCACGACCATCTAAAAAATGTGTCTGCTCAGATTGCTTACTCCAACAGATCGGGGAGATGGAGGTTCCCTGAGTTGTACTATGAGCTCCAGTTCAAGGTTCCCCAGAGTAACGTGTCTGTGACCGTCCTGATGGTTGACACCGTAGTGCTCTGTGGGAACACCTATGAGGGGACCCAGCCCAAAGGAGAAGAGGACCCGGAGGCTGCTGCCAAGCAGTTCGACTGGATCAACTCCAGACTGGCAAACAGCAAGTCAGAGTTCATTGTGGTAGCTGGTCACTATCCTGTGTGGTCCATTGGTGATCACGGCCCCACTAAGTGTCTTGTGGATAGACTACGGCCACTGCTGAAGAAGTACGATGTCACAGTCTACCTGAGTGGTCATGACCACAGTATACAGTTTATCAGAGAGGATGATGGGAGTTCTTATGTGGTCAGCGGGAGTGGGGCCTTTACAGAAATGTCCATTCATAACATCAACAGCTTCCCGACTTCATGGCAACGGTTCTCCAACGCTGTCAACCATACATCCGGTGGGTTCGCTTACTTTGAAGTCACAGAGAACAATATGACTGTCAGCTACATCCAGACTGATGGGAAATGTGTTTAccaaacaggactggcaaaacGCAAAGTCTGACACAGGCAATGTCATCACGAGATAGTCAACAATCAACTACTGCAGGCTAATATGCTGACTGTTTCTAAGAGCATACTGTATCTTTAAGCAGTTTACAAAACTGAAAACATCTCATTCTAGTTCAATTCATCTTTTAACTCTGTTTTCTTTTGGTTAATAATTGTCTTGGACTGTAACAAAACAATGTTTTATATGATTTTCTCTGAATTGCAATTCTAATGTAATTTTAATGTTTTGAATGTGTTCTATTTTTCTTGAAAATCCACGCCCACAAAAATTGTGTGAAATAATTGTGAGTTGAATGACCTGTAGATGGTGCTGGTTAGATCTTTTTGCAGGAACTATACAAGACTGATGTCTGCTGTGATAAAGATGACGTAACTTGAGCATTCTCACCAGAGCGTAGTCACATTAACATAACATACCCCACTATTCCACGATGTCTCATATCAAAGATAAACACATTACCACAAATGAATGGTAAGACTTTATTATGAAAATGCCAATAAAATCAAACAAGAGTACCATATTAGTACCAGA
>XM_036935192.1
TCCAGGTGATACATTTAGGAACAGTTCTAAAGAGAACAAATGGAAATCTTCTTCCTGTAACAGCGTGTGACACACTGACCAACTGCTCAACTGTTCGTTTTCTTTGTTACATCGCTGCGGTTCAttgggctgggggactggggagGACTCCCGCTCTTCCCTTACTACACCCCTCATGAGGAGGCCATCGCTGAGGAGATGTCCTGGGCAGCCCAGACCCTGGGACTGGACTTTGTCCTCAGTCTGGGAGACCACTTCTACTATGGCGGAGTGAAGGACGTGGATGACCCACGCTTCAAGCACACCTTCGAGCGTGTCTTCTCTCAACCATCACTCGTTGACGTCCCATGGTACCTTGTGGCGGGAAACCACGACCATCTAAAAAATGTGTCTGCTCAGATTGCTTACTCCAACAGATCGGGGAGATGGAGGTTCCCTGAGTTGTACTATGAGCTCCAGTTCAAGGTTCCCCAGAGTAACGTGTCTGTGACCGTCCTGATGGTTGACACCGTAGTGCTCTGTGGGAACACCTATGAGGGGACCCAGCCCAAAGGAGAAGAGGACCCGGAGGCTGCTGCCAAGCAGTTCGACTGGATCAACTCCAGACTGGCAAACAGCAAGTCAGAGTTCATTGTGGTAGCTGGTCACTATCCTGTGTGGTCCATTGGTGATCACGGCCCCACTAAGTGTCTTGTGGATAGACTACGGCCACTGCTGAAGAAGTACGATGTCACAGTCTACCTGAGTGGTCATGACCACAGTATACAGTTTATCAGAGAGGATGATGGGAGTTCTTATGTGGTCAGCGGGAGTGGGGCCTTTACAGAAATGTCCATTCATAACATCAACAGCTTCCCGACTTCATGGCAACGGTTCTCCAACGCTGTCAACCATACATCCGGTGGGTTCGCTTACTTTGAAGTCACAGAGAACAATATGACTGTCAGCTACATCCAGACTGATGGGAAATGTGTTTAccaaacaggactggcaaaacGCAAAGTCTGACACAGGCAATGTCATCACGAGATAGTCAACAATCAACTACTGCAGGCTAATATGCTGACTGTTTCTAAGAGCATACTGTATCTTTAAGCAGTTTACAAAACTGAAAACATCTCATTCTAGTTCAATTCATCTTTTAACTCTGTTTTCTTTTGGTTAATAATTGTCTTGGACTGTAACAAAACAATGTTTTATATGATTTTCTCTGAATTGCAATTCTAATGTAATTTTAATGTTTTGAATGTGTTCTATTTTTCTTGAAAATCCACGCCCACAAAAATTGTGTGAAATAATTGTGAGTTGAATGACCTGTAGATGGTGCTGGTTAGATCTTTTTGCAGGAACTATACAAGACTGATGTCTGCTGTGATAAAGATGACGTAACTTGAGCATTCTCACCAGAGCGTAGTCACATTAACATAACATACCCCACTATTCCACGATGTCTCATATCAAAGATAAACACATTACCACAAATGAATGGTAAGACTTTATTATGAAAATGCCAATAAAATCAAACAAGAGTACCATATTAGTACCAGA
>XM_021620511.2
TGTCTTGTTTTCATCTAATTGTAATATTCATATATGTAGCTAATTTATTACATTCCGAATATACTAATTTGATCACTTAAATTGATTGTCTAGCGGCTAGCCTGTCCATTGTTCTGTCTTGTCTTCTGACATGGCTCAATAAAGGAAGTTATCTGAAACCACAATACTGCTTCCTCTATAGGAACAGTTCTAAAGAGAACAAATGGAAATCTTCTTCCTGTAACAGCGTGTGACACACTGACCAACTGCTCAACTGTTCGTTTTCTTTGTTACATCGCTGCGGTTCAttgggctgggggactggggagGACTCCCGCTCTTCCCTTACTACACCCCTCATGAGGAGGCCATCGCTGAGGAGATGTCCTGGGCAGCCCAGACCCTGGGACTGGACTTTGTCCTCAGTCTGGGAGACCACTTCTACTATGGCGGAGTGAAGGACGTGGATGACCCACGCTTCAAGCACACCTTCGAGCGTGTCTTCTCTCAACCATCACTCGTTGACGTCCCATGGTACCTTGTGGCGGGAAACCACGACCATCTAAAAAATGTGTCTGCTCAGATTGCTTACTCCAACAGATCGGGGAGATGGAGGTTCCCTGAGTTGTACTATGAGCTCCAGTTCAAGGTTCCCCAGAGTAACGTGTCTGTGACCGTCCTGATGGTTGACACCGTAGTGCTCTGTGGGAACACCTATGAGGGGACCCAGCCCAAAGGAGAAGAGGACCCGGAGGCTGCTGCCAAGCAGTTCGACTGGATCAACTCCAGACTGGCAAACAGCAAGTCAGAGTTCATTGTGGTAGCTGGTCACTATCCTGTGTGGTCCATTGGTGATCACGGCCCCACTAAGTGTCTTGTGGATAGACTACGGCCACTGCTGAAGAAGTACGATGTCACAGTCTACCTGAGTGGTCATGACCACAGTATACAGTTTATCAGAGAGGATGATGGGAGTTCTTATGTGGTCAGCGGGAGTGGGGCCTTTACAGAAATGTCCATTCATAACATCAACAGCTTCCCGACTTCATGGCAACGGTTCTCCAACGCTGTCAACCATACATCCGGTGGGTTCGCTTACTTTGAAGTCACAGAGAACAATATGACTGTCAGCTACATCCAGACTGATGGGAAATGTGTTTAccaaacaggactggcaaaacGCAAAGTCTGACACAGGCAATGTCATCACGAGATAGTCAACAATCAACTACTGCAGGCTAATATGCTGACTGTTTCTAAGAGCATACTGTATCTTTAAGCAGTTTACAAAACTGAAAACATCTCATTCTAGTTCAATTCATCTTTTAACTCTGTTTTCTTTTGGTTAATAATTGTCTTGGACTGTAACAAAACAATGTTTTATATGATTTTCTCTGAATTGCAATTCTAATGTAATTTTAATGTTTTGAATGTGTTCTATTTTTCTTGAAAATCCACGCCCACAAAAATTGTGTGAAATAATTGTGAGTTGAATGACCTGTAGATGGTGCTGGTTAGATCTTTTTGCAGGAACTATACAAGACTGATGTCTGCTGTGATAAAGATGACGTAACTTGAGCATTCTCACCAGAGCGTAGTCACATTAACATAACATACCCCACTATTCCACGATGTCTCATATCAAAGATAAACACATTACCACAAATGAATGGTAAGACTTTATTATGAAAATGCCAATAAAATCAAACAAGAGTACCATATTAGTACCAGA

Function

NR:

description
tartrate-resistant acid phosphatase type 5-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935191.1 False 1552 mRNA 0.45 7 22557109 22564107
XM_036935190.1 False 1653 mRNA 0.45 7 22557123 22564107
XM_021620510.2 False 1650 mRNA 0.45 7 22557139 22564107
XM_036935192.1 False 1548 mRNA 0.45 7 22557139 22564107
XM_021620511.2 True 1711 mRNA 0.44 6 22557189 22564107

Neighbor

gene id symbol gene type direction distance location
LOC110535485 LOC106578486 coding upstream 2926 22541599 ~ 22554183 (+)
LOC110535481 LOC105022597 coding upstream 151374 22392395 ~ 22405735 (+)
olfm3a olfm3 coding upstream 200701 22326089 ~ 22356408 (+)
LOC118937330 NA coding upstream 207853 22345993 ~ 22349256 (+)
col11a1a col11a1 coding upstream 252592 22215859 ~ 22304517 (+)
tlcd4a LOC106570700 coding downstream 148470 22712577 ~ 22741263 (+)
LOC110535493 LOC106578494 coding downstream 186616 22750723 ~ 22756977 (+)
ptbp2a ptbp2 coding downstream 387054 22951161 ~ 22966803 (+)
snx7 snx7 coding downstream 765643 23329750 ~ 23365999 (+)
LOC110535498 NA coding downstream 817422 23381529 ~ 23387901 (+)
G955531 NA non-coding upstream 75506 22478451 ~ 22481603 (+)
G955501 LOC108235267 non-coding upstream 130824 22424931 ~ 22426285 (+)
G955498 LOC104966354 non-coding upstream 133903 22420813 ~ 22423206 (+)
G955490 LOC108412106 non-coding upstream 143241 22408314 ~ 22413868 (+)
G955488 NA non-coding upstream 149425 22406663 ~ 22407684 (+)
G955575 NA non-coding downstream 7826 22571933 ~ 22626610 (+)
G955741 NA non-coding downstream 263898 22828005 ~ 22828323 (+)
G955785 NA non-coding downstream 328973 22893080 ~ 22976240 (+)
G955814 NA non-coding downstream 416026 22980133 ~ 22980463 (+)
G955830 NA non-coding downstream 443553 23007660 ~ 23064013 (+)
phldb2b tcpe other upstream 2787756 19740565 ~ 19799150 (+)
G951511 NA other upstream 3430024 19126665 ~ 19127085 (+)
G948710 NA other upstream 5955217 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 6011820 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 6221817 16327393 ~ 16338373 (+)
G956728 LOC106613263 other downstream 1101181 23665288 ~ 23665930 (+)
G956797 NA other downstream 1211665 23775772 ~ 23776845 (+)
G957942 NA other downstream 2036364 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 2230493 24794600 ~ 24795736 (+)

Expression


Co-expression Network