LOC110535490 (LOC106578491)


Basic Information

Item Value
gene id LOC110535490
gene name LOC106578491
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 22669966 ~ 22685796 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935196.1
GCTGCTGCAGCTGAAATGGGCTACAGAGTTGAACATATCGCAGGCAAATATGACATGCAGAAGGAGGAGGAGCTTCGGTTCTGGATTGAGGAGGTGACGGCGATGGCCATTGGCGAGAACTTCCAGAAGGGCCTAAAGGATGGAGTCATCCTGGGAGaATTGATAAACAAACTGCAACCTGGCTCGATAAAGAAAATTAACCACTCACAACTGAACTGGCACAAGCTGGAGAACCTTGGCAACTTCATCAAAGCCATCCTGGCCTACGGCATGAAGCCCAATGACATCTTCGAGGCCAACGACCTGTTTGAGAACGGCAACATGACCCAAGTCCAGAGCACATTGCTCTCCCTTGCTAGCATAGCAAAGACCAAAGGCATGCACACATCGTGTGACATTGGTGTGAAATACGCAGACAAACAGACACGCCATTTTGATGACGATAAGATCAAGGCTGGACAATGCGTCATCGGACTGCAGATGGGGACCAACAAGTGTGCGAGCCAGGCTGGTATGACAGCATATGGGACCAGAAGACATCTTTACGACCCAAGGTCCCAGACAGACAAGCCTTATGACCAGACCACCATCAGTCTGCAGATGGGTACCAACAAAGGAGCCAGCCAGgctGGTATGTCCTGCCCGGGAACGCGTCGGGATATCTTCGACAATAAGCAGGTACATCCAGTGGACAACTCCACCATCTCCCTGCAGATGGGCACCAACAAGGTGGCGTCCCAGAAAGGCATGAGTGCGTACGGGCTGGGACGCCAGGTGTACGACCCCAAGTACTGCGGCTCGCCCACTGAGCCCGTCATACATACCAACGGGAGCCAAGGCACGGGCACCAACTGCTCTGAGATCAGCGACAGTGACTATCAGGCAGAGGAATTCCtccaggagggagagggggaggagtacCCAGTGGCTTATCAGGAAGAAGACAACTACAGCGACGTGGCCCACTACAACAACATCGACCAGGGAATCGACTATTAGGGCTGTCCGGGCCATCCggcactagcctggtcccagattagTTTGTGCTGTCTTACCAATGACCATAGGCGTTGGCAAGaccgcacaaacagatctgggaccaggttaatcCGGCGCCACCTTAACACCACAACGACCGCTAGACGGAGCAGTATTAAACCAGTGTATTTTATTGATGACAAACAGAGCAAGTCTTTTGCTATCCTCGCTAAtctttaacattttttttattgaagcACAAGAGATAAATATTGTCGAGTGCGTTCCTTCTCCACCACCTCCCCAACTCTCCTTCCATTTGAGCAGTAGTGTTCATGCCGACGTCATTAAAGCATAAAGTGCTGAGATACAGTGTTGGAGATgctatattattatactattacattaTGAAGTATGGGACACTGTGAAGTAAAGATTAATTTTGCCAACCTTGTAGCATTTTCAACCAttctatttttttacttttttttttatcccttAGACTTCTTTTACTGATCATATCATCCCTTTAAAGGAATTAATTCACCGACTGCTTTGCTTTCTGCCAACCTAAAAGGACCAATTATTACCTTTTTTACGTCAATACAATTGAGTGAGCCTCAGAGTAACCAGTGGCCGTCTCGTCTGTTTAAAATTTTTGTTGTGTTTCAATACAAATCACTGCACCATTTATTTTCCTAAAATCGCACAGAGTAATTTCTATTAGACCAGATGCATACAGTAGGGCTAGTCTTATTGTGCCATGTCTCATGTTCTTATAGCCACCCTCCATTCCCACTGTATTTATTGCCATGTCTCTCATTATAAACTAGTGTGGTGTCTGataaggcaccctattccctatatagtgcactactttcagccagggctctggtctaaagtagtgcactatatcgggtTCTATTTCAGACGCAACCTGTCCTGTTatgtaattattttttattttttttaaagcaaaaaTGTATGTTCCAAATAAAGCCTATTCCTTGGTTCTCCAAGC
>XM_036935195.1
AATGAGGTATTGAAGCGAGAAGTTTTAGTCCGACCAGCCTCTGCGATACTCACAGTCCACACATTTGCACGGATTTAAACTCCTCCTTTGGACTGACTGAACGGGACGCCGAACTACGCTTTTCGTTGTGTGATACAAAGTAACCGAAAGGAATCGTTTTTGCTACTTTGTAGCAGTGGATATTGACTTTGGTTGTAAATCTAAAACAAATATGACTTCATTCAATAAGGGACCAGCCTACGGGTTATCAGCAGAGGTGAAAAGCAAAATCGCAGGCAAATATGACATGCAGAAGGAGGAGGAGCTTCGGTTCTGGATTGAGGAGGTGACGGCGATGGCCATTGGCGAGAACTTCCAGAAGGGCCTAAAGGATGGAGTCATCCTGGGAGaATTGATAAACAAACTGCAACCTGGCTCGATAAAGAAAATTAACCACTCACAACTGAACTGGCACAAGCTGGAGAACCTTGGCAACTTCATCAAAGCCATCCTGGCCTACGGCATGAAGCCCAATGACATCTTCGAGGCCAACGACCTGTTTGAGAACGGCAACATGACCCAAGTCCAGAGCACATTGCTCTCCCTTGCTAGCATAGCAAAGACCAAAGGCATGCACACATCGTGTGACATTGGTGTGAAATACGCAGACAAACAGACACGCCATTTTGATGACGATAAGATCAAGGCTGGACAATGCGTCATCGGACTGCAGATGGGGACCAACAAGTGTGCGAGCCAGGCTGGTATGACAGCATATGGGACCAGAAGACATCTTTACGACCCAAGGTCCCAGACAGACAAGCCTTATGACCAGACCACCATCAGTCTGCAGATGGGTACCAACAAAGGAGCCAGCCAGgctGGTATGTCCTGCCCGGGAACGCGTCGGGATATCTTCGACAATAAGCAGGTACATCCAGTGGACAACTCCACCATCTCCCTGCAGATGGGCACCAACAAGGTGGCGTCCCAGAAAGGCATGAGTGCGTACGGGCTGGGACGCCAGGTGTACGACCCCAAGTACTGCGGCTCGCCCACTGAGCCCGTCATACATACCAACGGGAGCCAAGGCACGGGCACCAACTGCTCTGAGATCAGCGACAGTGACTATCAGGCAGAGGAATTCCtccaggagggagagggggaggagtacCCAGTGGCTTATCAGGAAGAAGACAACTACAGCGACGTGGCCCACTACAACAACATCGACCAGGGAATCGACTATTAGGGCTGTCCGGGCCATCCggcactagcctggtcccagattagTTTGTGCTGTCTTACCAATGACCATAGGCGTTGGCAAGaccgcacaaacagatctgggaccaggttaatcCGGCGCCACCTTAACACCACAACGACCGCTAGACGGAGCAGTATTAAACCAGTGTATTTTATTGATGACAAACAGAGCAAGTCTTTTGCTATCCTCGCTAAtctttaacattttttttattgaagcACAAGAGATAAATATTGTCGAGTGCGTTCCTTCTCCACCACCTCCCCAACTCTCCTTCCATTTGAGCAGTAGTGTTCATGCCGACGTCATTAAAGCATAAAGTGCTGAGATACAGTGTTGGAGATgctatattattatactattacattaTGAAGTATGGGACACTGTGAAGTAAAGATTAATTTTGCCAACCTTGTAGCATTTTCAACCAttctatttttttacttttttttttatcccttAGACTTCTTTTACTGATCATATCATCCCTTTAAAGGAATTAATTCACCGACTGCTTTGCTTTCTGCCAACCTAAAAGGACCAATTATTACCTTTTTTACGTCAATACAATTGAGTGAGCCTCAGAGTAACCAGTGGCCGTCTCGTCTGTTTAAAATTTTTGTTGTGTTTCAATACAAATCACTGCACCATTTATTTTCCTAAAATCGCACAGAGTAATTTCTATTAGACCAGATGCATACAGTAGGGCTAGTCTTATTGTGCCATGTCTCATGTTCTTATAGCCACCCTCCATTCCCACTGTATTTATTGCCATGTCTCTCATTATAAACTAGTGTGGTGTCTGataaggcaccctattccctatatagtgcactactttcagccagggctctggtctaaagtagtgcactatatcgggtTCTATTTCAGACGCAACCTGTCCTGTTatgtaattattttttattttttttaaagcaaaaaTGTATGTTCCAAATAAAGCCTATTCCTTGGTTCTCCAAGC

Function

NR:

description
PREDICTED: calponin-3-like

GO:

id name namespace
GO:0031032 actomyosin structure organization biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935196.1 False 1999 mRNA 0.46 7 22669966 22685424
XM_036935195.1 True 2231 mRNA 0.46 7 22669966 22685796

Neighbor

gene id symbol gene type direction distance location
LOC110535489 LOC106578489 coding downstream 41108 22622607 ~ 22628858 (-)
f3a LOC106578489 coding downstream 96239 22564042 ~ 22573727 (-)
arhgap29a LOC106578485 coding downstream 141701 22460588 ~ 22528265 (-)
abca4a LOC107729654 coding downstream 209465 22405796 ~ 22460501 (-)
rnpc3 rnpc3 coding downstream 487559 22167163 ~ 22182407 (-)
LOC110535495 LOC106578501 coding upstream 343030 23028826 ~ 23246227 (-)
LOC118937332 NA coding upstream 587040 23272776 ~ 23277046 (-)
LOC110535499 LOC106578506 coding upstream 701491 23387287 ~ 23491648 (-)
frrs1b frrs1 coding upstream 919124 23604920 ~ 23650700 (-)
neurod6a neurod6 coding upstream 1016052 23701848 ~ 23705346 (-)
G956126 LOC106578486 non-coding downstream 120301 22549254 ~ 22549665 (-)
G956117 NA non-coding downstream 129317 22540204 ~ 22540649 (-)
G956056 NA non-coding downstream 215627 22394734 ~ 22454339 (-)
G956055 NA non-coding downstream 258753 22394158 ~ 22411213 (-)
G956321 ptbp2 non-coding upstream 278065 22963861 ~ 22964602 (-)
G956430 NA non-coding upstream 501473 23187269 ~ 23187632 (-)
G956466 NA non-coding upstream 562148 23247944 ~ 23248190 (-)
G956477 NA non-coding upstream 568404 23254200 ~ 23254421 (-)
G956495 NA non-coding upstream 585868 23271664 ~ 23271918 (-)
G954919 NA other downstream 1090138 21579583 ~ 21579828 (-)
G954484 arhgef4 other downstream 1416657 21246014 ~ 21253309 (-)
G954441 NA other downstream 1591308 21077650 ~ 21078658 (-)
G952255 LOC106578453 other downstream 3255230 19401554 ~ 19414736 (-)
dap dap other downstream 3806191 18849188 ~ 18863855 (-)
G956234 LOC106578494 other upstream 67484 22753280 ~ 22756973 (-)
G956366 NA other upstream 321354 23007150 ~ 23043985 (-)
G957170 NA other upstream 1038183 23723979 ~ 23724418 (-)
G957157 LOC106578515 other upstream 1060684 23746480 ~ 23748084 (-)
G957684 NA other upstream 1556926 24242722 ~ 24243309 (-)

Expression

LOC110535490(LOC106578491) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 300.
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LOC110535490(LOC106578491) Expression in each Bioproject

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LOC110535490(LOC106578491) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network