ptbp2a (ptbp2)


Basic Information

Item Value
gene id ptbp2a
gene name ptbp2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 22951161 ~ 22966803 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620520.2
CTATTTCCGCCTTATTCGACTATTTCCGCCACGGTCTCCAGTCCCTCCATTTTGTTTTCTGTTGTTGGCAAGAGAACATTTCAGAAAACTGAGTTGTTTAGAAGGATTTTCTGGCAATGGACGGTATTGGAGATGTTGCAGTTGGCGTAAAGaGAGGATCAGATGAGCTGCTGTCAAGCAGTCTCTACAACAGTGGCTCTGACATGAGCAGTATCAGTGATGGTACGTCCAACGGGAGTGACAGTAAAAAACTGAGAGTGGAAGACAGGATGGAGGCTCCTCCTTCTCGTGTGTTGCACATCAGAAAACTGCCCAACGAAACTTCAGAAACGGAGGTCATTGCCCTGGGGTTACCTTTCGGGAAGGTCACCAATATCCTGACTCTGAAGGGAAAAAACCAGGCTTTCTTGGAGCTGGGGACAGAGGAAGCGGCAATTACTATGGTcaactactactctactgtgacACCGCATGTTCGTAATGTCCCCGTATTCATCCAGTACTCCAACCACAAAGAACTCAAAACGGACGCCGGAAACCAGCGGGCCCAGGCGGTCCTGCAGGCGGTGTCAGCGGTCCAAGGAGGCGGTACCCCTACATCGGGTTCAGATCTGGCTCTAACAGCTGCATCCAGCCCTGTGCTCAGAATAATCATTGACAACATGTTCTACCCTGTCACTCTGGATGTGCTGCAGCAGATCTTCTCAAAGTTCGGCACGGTCATGAAGATAATCACATTCACTAAGAACAATCAGTTCCAGGCCCTGCTGCAGTTCAACGACCCATCTACCGCACAGCAAGCCAAAATTGCCCTGGATGGTCAGAACATCTACAACTCGTGCTGTACGCTCCGCATCGATTACTCCAAGCTGGTCAACCTGAATGTCAAGTACAACAACGACAAGAGCCGTGACTACACCCGGCCAGAGCTCCCCGCCGGGGATGGACAGCCTGCCATGGACCCCAACATGGCTGCTGCCTTTCAAGGCAAGGACTCCAACTCTCTGCTTGGTAAGATCCCAGGTGCGCTGAGCCCGCTGAATGCTGCGGCGGCGGCGGCGGCTGCTGCAGGGAGGGTGGCTCTGTCTGGTCACTCTGGCTCCAGCGGCGTGCTCCTGGCCTCCAACCTCAATGAAGAGATGGTTACGCCCCAAAGTCTGTTTACTCTCTTCGGGGTCTATGGGGACACCCAGAGGGTGAAGATTCTTTACAATAAGAAGGACAGTGCTCTGATACAGATGGCCGATGCCAGTCAGGCCCAGCTAGCGATGAGTCACCTGAACGGTCAGAAGATGTATGGGAAGGTCATCAGGGTGGCTCTGTCCAAGCACACCTCAGTGCAGCTGCCCAGGGATGGACTGGATGACCAGGGCCTTACCAAGGACTTCACCAACTCCCCCCTGCACCGCTTCAAGAAGCCCGGCTCCAAGAACTTTCAGAacatcttccctccctccaccacccttCACCTCTCCAACATCCCAACGGACGTAACTGAAGAAGACCTGAGACTACTGTTCTCCAATGCCGGGGGCACTGTGAACGCATTCAAGTTTTTCCAGGATCACAAAATGGCGCTGCTCCAGATGTCGACGGTGGAAGAGGCCATCCAGGGTCTGATCGACCTCCACAACTACAACATGGGTGACAACCACCACCTGAGAGTGTCCTTCTCCAAATCCTCCATCTAAACCAGCATAATGATCCTCCACAATATCCATCGCTTTCTGTTTCCAAATGGCCTTTGGCTGCCGTTCGTTTATCCGGTTCACTCTTTCCAGACGGGGGGGGACCACATTTTGACCTCATTGTAGTTCTTTCTATTTTTGTCTTTCTACGTGTTATCAGTCATTCCTTCAGAGAACCAGAAACTAAAatgtgtattaaaaaaaaaagttgttgtACTTGTATGTTTTTGAGGGTGTTTTACCCCCTTCACCTGACCCCTGTGTAAGTCCCATATTCCATTTGTATGATAGGCAAACCATTTTCTTTTTCCATCTTCTTATGAAGGGTGGATGAATGGACTTTGGTGTCTCTTTATGATTAGTTATATAAGATATGTGCCTTACCTGACAATATCAACTCTTTTTACATTTAAATATTTACACGAATCCCTGCAGTCAGATTTTGAGGCACATTCATTTTGATGTGTAAGATTAGTTCAAAACATGATTTCTGTTCTCCCATGTGTCTGTGCAGTTTGAACTGCCGCCACCCCAAAAAACGTCCCCTTTTTTGTTGTAGGTGTTGAGTTTGTGCTAGATTTTATTTTGTTAGTCACTAGTTGTGGAGTGGGGAACCATATGAGATTGAAGTTGAATCAGACTTTTTACATCTGTTTTTTTTGTGCTAACTTGGACCACCATGCTTGAGTTTCCATCTGTATGATTATTTTAACTGTTTGATTCCACAGGTCATCCATTTACTAAAATAGTCCATGTTGCTGTTCTTTAGGTGTtaggttttttttgggggggggggtgtacatgGGTAGAAGTTGAGTGGTTTCCTAAGCATGTACTGCCTGGTCTAGTTATTGGAATTAAAAGTTGGTAGTACTTTATTCATTTGAACTGTACTTCATAACTGTCATTGTCCTACAGGTGATGAAACGAATGTCATGGCGATTATTATGAAGTACAGTTTAAATGAAGTGTTACGAGATCTGCTGTTGCATGCGTTTTAGAAGAGTATCTGTAGTGACGTCAACGTGTTGCAGTTTACTGATGAGGGTTGGGACCAAAGTGTATGTGCCTTTTTTGTTTTTAGTTTTAATTTACATCTCATCGCCAAGGAAAGGAACAATATTTTAGTGAACCGCTGATATATTTTGTATATCTGAACAAATAAGATACAGGACCTGATTCAGAATCAACAACCTTCATTCCTTCTATGGTTATTTTAAGCTGATCTACATGTAATACCCACAATAGTTTGAAGAATCCCACAACCTCAACTTCCTAGAAAACGAGATTGTTTTTCAAGATAAGTCATGTATATTTTCTATCAGTTACATTTTTACAGCTCTAGAAATGTAATATTCAGATATAGTTTGGAAGCGGCACAATTAAAATAATTTTCTAACAAATTGGGATATTTGGTCTGACTTAGTTGTTTTGAGATATTTTTTTCTCCACTTTTTATCTTCTCTCTTGTGTGTACTTTACTTTACCTGTGTAGCATGCTCAATAAACTCTTCTGTAGCTCTGTA
>XM_021620521.2
CTATTTCCGCCTTATTCGACTATTTCCGCCACGGTCTCCAGTCCCTCCATTTTGTTTTCTGTTGTTGGCAAGAGAACATTTCAGAAAACTGAGTTGTTTAGAAGGATTTTCTGGCAATGGACGGTATTGGAGATGTTGCAGTTGGCGTAAAGaGAGGATCAGATGAGCTGCTGTCAAGCAGTCTCTACAACAGTGGCTCTGACATGAGCAGTATCAGTGATGGTACGTCCAACGGGAGTGACAGTAAAAAACTGAGAGTGGAAGACAGGATGGAGGCTCCTCCTTCTCGTGTGTTGCACATCAGAAAACTGCCCAACGAAACTTCAGAAACGGAGGTCATTGCCCTGGGGTTACCTTTCGGGAAGGTCACCAATATCCTGACTCTGAAGGGAAAAAACCAGGCTTTCTTGGAGCTGGGGACAGAGGAAGCGGCAATTACTATGGTcaactactactctactgtgacACCGCATGTTCGTAATGTCCCCGTATTCATCCAGTACTCCAACCACAAAGAACTCAAAACGGACGCCGGAAACCAGCGGGCCCAGGCGGTCCTGCAGGCGGTGTCAGCGGTCCAAGGAGGCGGTACCCCTACATCGGGTTCAGATCTGGCTCTAACAGCTGCATCCAGCCCTGTGCTCAGAATAATCATTGACAACATGTTCTACCCTGTCACTCTGGATGTGCTGCAGCAGATCTTCTCAAAGTTCGGCACGGTCATGAAGATAATCACATTCACTAAGAACAATCAGTTCCAGGCCCTGCTGCAGTTCAACGACCCATCTACCGCACAGCAAGCCAAAATTGCCCTGGATGGTCAGAACATCTACAACTCGTGCTGTACGCTCCGCATCGATTACTCCAAGCTGGTCAACCTGAATGTCAAGTACAACAACGACAAGAGCCGTGACTACACCCGGCCAGAGCTCCCCGCCGGGGATGGACAGCCTGCCATGGACCCCAACATGGCTGCTGCCTTTCAAGGCAAGGACTCCAACTCTCTGCTTGGTGCGCTGAGCCCGCTGAATGCTGCGGCGGCGGCGGCGGCTGCTGCAGGGAGGGTGGCTCTGTCTGGTCACTCTGGCTCCAGCGGCGTGCTCCTGGCCTCCAACCTCAATGAAGAGATGGTTACGCCCCAAAGTCTGTTTACTCTCTTCGGGGTCTATGGGGACACCCAGAGGGTGAAGATTCTTTACAATAAGAAGGACAGTGCTCTGATACAGATGGCCGATGCCAGTCAGGCCCAGCTAGCGATGAGTCACCTGAACGGTCAGAAGATGTATGGGAAGGTCATCAGGGTGGCTCTGTCCAAGCACACCTCAGTGCAGCTGCCCAGGGATGGACTGGATGACCAGGGCCTTACCAAGGACTTCACCAACTCCCCCCTGCACCGCTTCAAGAAGCCCGGCTCCAAGAACTTTCAGAacatcttccctccctccaccacccttCACCTCTCCAACATCCCAACGGACGTAACTGAAGAAGACCTGAGACTACTGTTCTCCAATGCCGGGGGCACTGTGAACGCATTCAAGTTTTTCCAGGATCACAAAATGGCGCTGCTCCAGATGTCGACGGTGGAAGAGGCCATCCAGGGTCTGATCGACCTCCACAACTACAACATGGGTGACAACCACCACCTGAGAGTGTCCTTCTCCAAATCCTCCATCTAAACCAGCATAATGATCCTCCACAATATCCATCGCTTTCTGTTTCCAAATGGCCTTTGGCTGCCGTTCGTTTATCCGGTTCACTCTTTCCAGACGGGGGGGGACCACATTTTGACCTCATTGTAGTTCTTTCTATTTTTGTCTTTCTACGTGTTATCAGTCATTCCTTCAGAGAACCAGAAACTAAAatgtgtattaaaaaaaaaagttgttgtACTTGTATGTTTTTGAGGGTGTTTTACCCCCTTCACCTGACCCCTGTGTAAGTCCCATATTCCATTTGTATGATAGGCAAACCATTTTCTTTTTCCATCTTCTTATGAAGGGTGGATGAATGGACTTTGGTGTCTCTTTATGATTAGTTATATAAGATATGTGCCTTACCTGACAATATCAACTCTTTTTACATTTAAATATTTACACGAATCCCTGCAGTCAGATTTTGAGGCACATTCATTTTGATGTGTAAGATTAGTTCAAAACATGATTTCTGTTCTCCCATGTGTCTGTGCAGTTTGAACTGCCGCCACCCCAAAAAACGTCCCCTTTTTTGTTGTAGGTGTTGAGTTTGTGCTAGATTTTATTTTGTTAGTCACTAGTTGTGGAGTGGGGAACCATATGAGATTGAAGTTGAATCAGACTTTTTACATCTGTTTTTTTTGTGCTAACTTGGACCACCATGCTTGAGTTTCCATCTGTATGATTATTTTAACTGTTTGATTCCACAGGTCATCCATTTACTAAAATAGTCCATGTTGCTGTTCTTTAGGTGTtaggttttttttgggggggggggtgtacatgGGTAGAAGTTGAGTGGTTTCCTAAGCATGTACTGCCTGGTCTAGTTATTGGAATTAAAAGTTGGTAGTACTTTATTCATTTGAACTGTACTTCATAACTGTCATTGTCCTACAGGTGATGAAACGAATGTCATGGCGATTATTATGAAGTACAGTTTAAATGAAGTGTTACGAGATCTGCTGTTGCATGCGTTTTAGAAGAGTATCTGTAGTGACGTCAACGTGTTGCAGTTTACTGATGAGGGTTGGGACCAAAGTGTATGTGCCTTTTTTGTTTTTAGTTTTAATTTACATCTCATCGCCAAGGAAAGGAACAATATTTTAGTGAACCGCTGATATATTTTGTATATCTGAACAAATAAGATACAGGACCTGATTCAGAATCAACAACCTTCATTCCTTCTATGGTTATTTTAAGCTGATCTACATGTAATACCCACAATAGTTTGAAGAATCCCACAACCTCAACTTCCTAGAAAACGAGATTGTTTTTCAAGATAAGTCATGTATATTTTCTATCAGTTACATTTTTACAGCTCTAGAAATGTAATATTCAGATATAGTTTGGAAGCGGCACAATTAAAATAATTTTCTAACAAATTGGGATATTTGGTCTGACTTAGTTGTTTTGAGATATTTTTTTCTCCACTTTTTATCTTCTCTCTTGTGTGTACTTTACTTTACCTGTGTAGCATGCTCAATAAACTCTTCTGTAGCTCTGTA

Function

symbol description
ptbp2 Enables RNA binding activity. Involved in negative regulation of RNA splicing. Predicted to be integral component of membrane. Predicted to be part of spliceosomal complex. Predicted to be active in nucleus.

NR:

description
polypyrimidine tract-binding protein 2

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14948 PTBP2, NPTB; polypyrimidine tract-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620520.2 False 3214 mRNA 0.45 13 22951161 22966803
XM_021620521.2 True 3202 mRNA 0.45 13 22951161 22966803

Neighbor

gene id symbol gene type direction distance location
LOC110535493 LOC106578494 coding upstream 194184 22750723 ~ 22756977 (+)
tlcd4a LOC106570700 coding upstream 209898 22712577 ~ 22741263 (+)
LOC110535486 LOC106578488 coding upstream 387054 22557109 ~ 22564107 (+)
LOC110535485 LOC106578486 coding upstream 396978 22541599 ~ 22554183 (+)
LOC110535481 LOC105022597 coding upstream 545426 22392395 ~ 22405735 (+)
snx7 snx7 coding downstream 362947 23329750 ~ 23365999 (+)
LOC110535498 NA coding downstream 414726 23381529 ~ 23387901 (+)
LOC118937334 NA coding downstream 508332 23475135 ~ 23477150 (+)
LOC110535500 LOC106578508 coding downstream 528106 23494909 ~ 23531354 (+)
palmdb LOC106578510 coding downstream 596872 23563675 ~ 23604917 (+)
G955741 NA non-coding upstream 122838 22828005 ~ 22828323 (+)
G955575 NA non-coding upstream 324551 22571933 ~ 22626610 (+)
G955585 NA non-coding upstream 390057 22560466 ~ 22561104 (+)
G955531 NA non-coding upstream 469558 22478451 ~ 22481603 (+)
G955501 LOC108235267 non-coding upstream 524876 22424931 ~ 22426285 (+)
G955814 NA non-coding downstream 13330 22980133 ~ 22980463 (+)
G955830 NA non-coding downstream 40857 23007660 ~ 23064013 (+)
G955854 NA non-coding downstream 87314 23054117 ~ 23073461 (+)
G955919 NA non-coding downstream 213171 23179974 ~ 23184228 (+)
G956465 NA non-coding downstream 280630 23247433 ~ 23247727 (+)
phldb2b tcpe other upstream 3181808 19740565 ~ 19799150 (+)
G951511 NA other upstream 3824076 19126665 ~ 19127085 (+)
G948710 NA other upstream 6349269 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 6405872 16543682 ~ 16565783 (+)
G956728 LOC106613263 other downstream 698485 23665288 ~ 23665930 (+)
G956797 NA other downstream 808969 23775772 ~ 23776845 (+)
G957942 NA other downstream 1633668 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 1827797 24794600 ~ 24795736 (+)
G960696 LOC106583976 other downstream 3746822 26713625 ~ 26797294 (+)

Expression


Co-expression Network