snx7 (snx7)


Basic Information

Item Value
gene id snx7
gene name snx7
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 23329750 ~ 23365999 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935203.1
CAGTAAATTGAATTCACTCAAATTCTGAAATTATACTGAGTTTCAGCAGCAGCGACTGCTGATGATGTCCCCGTAGCCTACATTGTCGGTGTAAATCTGGGCAGCTATGAGTAGAACTATCGACGCTGTTGTGTCCCCCACCCAAACAAATACAATACCTGCCGACATCTCCGGACAGATGTTAGATCTAGACGAGGACGACGATTTAGAAGTTTTCAGCAAGGATTCGACTCTTGCAGACGGGAATATGTTCAACGCCTCAATGCCGACATCCCCAGGCTCCATGGTCAACCAGTGTAAGTTTGAGGAGGACGAGGAGAGTGACTCTAAAGACATCTTCATTACAGTGGACAACCCAGAGAGTCATGTGACTGCCATTGAGACCTTCATCACCTACAGAGTTCTGACCaagaCCACACGGAGTGAGTTTGACAACTCTGAGTACGAAGTCCGCAGGCGCTACCAAGACTTCCTCTGGCTCAAAGGGAAACTGGAGGATACCCACTCAACTCTCATTGTTCATCCTCTGCCAGAGAAGTTTGTGGTGAAGGGGATGGTGGAGAGGTTCAATGGTGATTTCATCGAGACACGGAGGAAAGCTCTCCACAAGTTCCTTAATCGCGTTGCTGATCACCCCATTCTGTCCTGCAGCGAAGACTTCAAAGTCTTCCTTAGTGCTCAGGCCTGGGAGCTGACAACCTATAAGAAGCAAGGCCCGGGGTTCCTGAGCAGGATGGGGGAAACGGTGCGAGCGGTGGCTAACTCAGTCAGAGGGGTGAAGAACCGGCCAGAGGAGTTCACCGCCATCCAGGAGTACGTGGAGGATTTCAGCAACAAGATCGGCTCTCTGGACAAAGTCACCCAGAGGATCGTCAAAGAACAGAAAGAGTACCTGGAGGAGCTAAAGGAGTACGGGCCCACCTACACCCTGTGGTCTGGCTCGGAGGAGGAGCTGGCAGAGCAGTTGAAAGGTGTAGCCGGCTGCATAGAGAGGTGCTGTaaagagacagaggaacaggTCGGCCATCTCTCAGACACCCTGGTGCCTGTTTTACACGAGTATGTCCTGTGTGCTGAGACACTCAAGGCAGTATTGAGACGGAGGGATAACATTCAGGCGGAATTTGAGGCCAAGAATGAAGCTCTGGCCACCAAGAAAGTTGACCGCGATGCAGAGTCTAGTGATCTAGGTTTTGTGTGGGGGAGCCTGCTGGGTAAAAACCCTGAAGAAGCCAGACATCAGAGGCAGGAGAGACTTGATGGGGAGATTGAAGAGctgaaGGAGGAGATTGATAAACTGGAGGACCGTGTGGAATGGGCCAACAATGCTCTGAAGGGGGACTGGGGCCGATGGCAGAGGAGCATGAGAGGAGACCTTAAATCAGCCTTCCTCTCCACCGCAGAGAAGAACGTAGACTACTACGAGAAGTGTCTGGCAGTGTGGGAGACCTTCCTTCTCTCCCAGAGAACAGAACCCAGCGAGgagactgacagagacaacaCCCCCTAACCTCCACGATACACTTCTTCTCTATTACGCAACCCTCTGCCTACTACCCCCTACCCAGGGGGCACAGCCAAAGACATCTTCCAGCACAACCCGGAGGATTCCTGGAATTTAACCCTGATCATTCCAATGAAGCTTCACTTTAAAGTCACTTTAGCACAGACTGTGATAAATCTGAGAGATCTTTAAATATGCATGATCAGCCAGCCGCTGCCTTAGGGCTTCTGTATGTACAGCCCTGGATCTGAGGGTAGATATACTGAGTACACTGATGGATCCCCCATGATTTTCACAGCAATACAATGACGTACTTTACTTGTTTACCTGTTTTACAATGACTCACTATGGTATTTTGATAACAGAAAATAAACTAAAGAGtgccacttttttttattttatactatACACATTTTTCTATTTGTAAAGCTTTAAATTGGGTTTTTAAGATGTTGGCATAATAAATGGATTGCTAAATTGCA
>XM_036935204.1
TAAATTGAATTCACTCAAATTCTGAAATTATACTGAGTTTCAGCAGCAGCGACTGCTGATGATGTCCCCGTAGCCTACATTGTCGGTGTAAATCTGGGCAGCTATGAGTAGAACTATCGACGCTGTTGTGTCCCCCACCCAAACAAATACAATACCTGCCGACATCTCCGGACAGATGTTAGATCTAGACGAGGACGACGATTTAGAAGTTTTCAGCAAGGATTCGACTCTTGCAGACGGGAATATGTTCAACGCCTCAATGCCGACATCCCCAGGCTCCATGGTCAACCAGTGTAAGTTTGAGGAGGACGAGGAGAGTGACTCTAAAGACATCTTCATTACAGTGGACAACCCAGAGAGTCATGTGACTGCCATTGAGACCTTCATCACCTACAGAGTTCTGACCaagaCCACACGGAGTGAGTTTGACAACTCTGAGTACGAAGTCCGCAGGCGCTACCAAGACTTCCTCTGGCTCAAAGGGAAACTGGAGGATACCCACTCAACTCTCATTGTTCATCCTCTGCCAGAGAAGTTTGTGGTGAAGGGGATGGTGGAGAGGTTCAATGGTGATTTCATCGAGACACGGAGGAAAGCTCTCCACAAGTTCCTTAATCGCGTTGCTGATCACCCCATTCTGTCCTGCAGCGAAGACTTCAAAGTCTTCCTTAGTGCTCAGGCCTGGGAGCTGACAACCTATAAGAAGCAAGGCCCGGGGTTCCTGAGCAGGATGGGGGAAACGGTGCGAGCGGTGGCTAACTCAGTCAGAGGGGTGAAGAACCGGCCAGAGGAGTTCACCGCCATCCAGGAGTACGTGGAGGATTTCAGCAACAAGATCGGCTCTCTGGACAAAGTCACCCAGAGGATCGTCAAAGAACAGAAAGAGTACCTGGAGGAGCTAAAGGAGTACGGGCCCACCTACACCCTGTGGTCTGGCTCGGAGGAGGAGCTGGCAGAGCAGTTGAAAGGTGTAGCCGGCTGCATAGAGAGGTGCTGTaaagagacagaggaacaggTCGGCCATCTCTCAGACACCCTGGTGCCTGTTTTACACGAGTATGTCCTGTGTGCTGAGACACTCAAGGCAGTATTGAGACGGAGGGATAACATTCAGGCGGAATTTGAGGCCAAGAATGAAGCTCTGGCCACCAAGAAAGTTGACCGCGATGCActgaaGGAGGAGATTGATAAACTGGAGGACCGTGTGGAATGGGCCAACAATGCTCTGAAGGGGGACTGGGGCCGATGGCAGAGGAGCATGAGAGGAGACCTTAAATCAGCCTTCCTCTCCACCGCAGAGAAGAACGTAGACTACTACGAGAAGTGTCTGGCAGTGTGGGAGACCTTCCTTCTCTCCCAGAGAACAGAACCCAGCGAGgagactgacagagacaacaCCCCCTAACCTCCACGATACACTTCTTCTCTATTACGCAACCCTCTGCCTACTACCCCCTACCCAGGGGGCACAGCCAAAGACATCTTCCAGCACAACCCGGAGGATTCCTGGAATTTAACCCTGATCATTCCAATGAAGCTTCACTTTAAAGTCACTTTAGCACAGACTGTGATAAATCTGAGAGATCTTTAAATATGCATGATCAGCCAGCCGCTGCCTTAGGGCTTCTGTATGTACAGCCCTGGATCTGAGGGTAGATATACTGAGTACACTGATGGATCCCCCATGATTTTCACAGCAATACAATGACGTACTTTACTTGTTTACCTGTTTTACAATGACTCACTATGGTATTTTGATAACAGAAAATAAACTAAAGAGtgccacttttttttattttatactatACACATTTTTCTATTTGTAAAGCTTTAAATTGGGTTTTTAAGATGTTGGCATAATAAATGGATTGCTAAATTGCA
>XM_036935205.1
ATCACCGAACACACCCCTCCATTTCAGGATAATAGGACGTGCCAATTAGCTGCATGCTCTCTAACAAGTGCACCTGGCCTCTGTGCTGCAGACAAGGCACCAGAGAAGAGCTGCAAAAACTGAAACGGATTCGACTCTTGCAGACGGGAATATGTTCAACGCCTCAATGCCGACATCCCCAGGCTCCATGGTCAACCAGTGTAAGTTTGAGGAGGACGAGGAGAGTGACTCTAAAGACATCTTCATTACAGTGGACAACCCAGAGAGTCATGTGACTGCCATTGAGACCTTCATCACCTACAGAGTTCTGACCaagaCCACACGGAGTGAGTTTGACAACTCTGAGTACGAAGTCCGCAGGCGCTACCAAGACTTCCTCTGGCTCAAAGGGAAACTGGAGGATACCCACTCAACTCTCATTGTTCATCCTCTGCCAGAGAAGTTTGTGGTGAAGGGGATGGTGGAGAGGTTCAATGGTGATTTCATCGAGACACGGAGGAAAGCTCTCCACAAGTTCCTTAATCGCGTTGCTGATCACCCCATTCTGTCCTGCAGCGAAGACTTCAAAGTCTTCCTTAGTGCTCAGGCCTGGGAGCTGACAACCTATAAGAAGCAAGGCCCGGGGTTCCTGAGCAGGATGGGGGAAACGGTGCGAGCGGTGGCTAACTCAGTCAGAGGGGTGAAGAACCGGCCAGAGGAGTTCACCGCCATCCAGGAGTACGTGGAGGATTTCAGCAACAAGATCGGCTCTCTGGACAAAGTCACCCAGAGGATCGTCAAAGAACAGAAAGAGTACCTGGAGGAGCTAAAGGAGTACGGGCCCACCTACACCCTGTGGTCTGGCTCGGAGGAGGAGCTGGCAGAGCAGTTGAAAGGTGTAGCCGGCTGCATAGAGAGGTGCTGTaaagagacagaggaacaggTCGGCCATCTCTCAGACACCCTGGTGCCTGTTTTACACGAGTATGTCCTGTGTGCTGAGACACTCAAGGCAGTATTGAGACGGAGGGATAACATTCAGGCGGAATTTGAGGCCAAGAATGAAGCTCTGGCCACCAAGAAAGTTGACCGCGATGCAGAGTCTAGTGATCTAGGTTTTGTGTGGGGGAGCCTGCTGGGTAAAAACCCTGAAGAAGCCAGACATCAGAGGCAGGAGAGACTTGATGGGGAGATTGAAGAGctgaaGGAGGAGATTGATAAACTGGAGGACCGTGTGGAATGGGCCAACAATGCTCTGAAGGGGGACTGGGGCCGATGGCAGAGGAGCATGAGAGGAGACCTTAAATCAGCCTTCCTCTCCACCGCAGAGAAGAACGTAGACTACTACGAGAAGTGTCTGGCAGTGTGGGAGACCTTCCTTCTCTCCCAGAGAACAGAACCCAGCGAGgagactgacagagacaacaCCCCCTAACCTCCACGATACACTTCTTCTCTATTACGCAACCCTCTGCCTACTACCCCCTACCCAGGGGGCACAGCCAAAGACATCTTCCAGCACAACCCGGAGGATTCCTGGAATTTAACCCTGATCATTCCAATGAAGCTTCACTTTAAAGTCACTTTAGCACAGACTGTGATAAATCTGAGAGATCTTTAAATATGCATGATCAGCCAGCCGCTGCCTTAGGGCTTCTGTATGTACAGCCCTGGATCTGAGGGTAGATATACTGAGTACACTGATGGATCCCCCATGATTTTCACAGCAATACAATGACGTACTTTACTTGTTTACCTGTTTTACAATGACTCACTATGGTATTTTGATAACAGAAAATAAACTAAAGAGtgccacttttttttattttatactatACACATTTTTCTATTTGTAAAGCTTTAAATTGGGTTTTTAAGATGTTGGCATAATAAATGGATTGCTAAATTGCA

Function

symbol description
snx7 Enables cysteine-type endopeptidase activity involved in apoptotic process. Acts upstream of or within liver development and negative regulation of apoptotic process. Is expressed in gut and liver. Orthologous to human SNX7 (sorting nexin 7).

NR:

description
sorting nexin-7 isoform X1

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0001889 liver development biological_process
GO:0097153 cysteine-type endopeptidase activity involved in apoptotic process molecular_function
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17921 SNX7_30; sorting nexin-7/30

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935203.1 False 1986 mRNA 0.49 10 23329750 23365999
XM_036935204.1 False 1881 mRNA 0.49 9 23329753 23365999
XM_036935205.1 True 1890 mRNA 0.49 10 23337846 23365999

Neighbor

gene id symbol gene type direction distance location
ptbp2a ptbp2 coding upstream 362947 22951161 ~ 22966803 (+)
LOC110535493 LOC106578494 coding upstream 572773 22750723 ~ 22756977 (+)
tlcd4a LOC106570700 coding upstream 588487 22712577 ~ 22741263 (+)
LOC110535486 LOC106578488 coding upstream 765643 22557109 ~ 22564107 (+)
LOC110535485 LOC106578486 coding upstream 775567 22541599 ~ 22554183 (+)
LOC110535498 NA coding downstream 15530 23381529 ~ 23387901 (+)
LOC118937334 NA coding downstream 109136 23475135 ~ 23477150 (+)
LOC110535500 LOC106578508 coding downstream 128910 23494909 ~ 23531354 (+)
palmdb LOC106578510 coding downstream 197676 23563675 ~ 23604917 (+)
LOC118936499 LOC106578510 coding downstream 224840 23590839 ~ 23594014 (+)
G956507 NA non-coding upstream 46185 23283357 ~ 23283565 (+)
G956498 NA non-coding upstream 52102 23277204 ~ 23277648 (+)
G956497 NA non-coding upstream 53153 23276382 ~ 23276597 (+)
G956496 NA non-coding upstream 54451 23272348 ~ 23275299 (+)
G956494 NA non-coding upstream 57946 23271444 ~ 23271804 (+)
G956569 NA non-coding downstream 4318 23370317 ~ 23370563 (+)
G956597 NA non-coding downstream 46326 23412325 ~ 23416289 (+)
G956657 NA non-coding downstream 127073 23493072 ~ 23493446 (+)
G956682 NA non-coding downstream 178495 23544494 ~ 23544728 (+)
phldb2b tcpe other upstream 3560397 19740565 ~ 19799150 (+)
G951511 NA other upstream 4202665 19126665 ~ 19127085 (+)
G948710 NA other upstream 6727858 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 6784461 16543682 ~ 16565783 (+)
G956728 LOC106613263 other downstream 299289 23665288 ~ 23665930 (+)
G956797 NA other downstream 409773 23775772 ~ 23776845 (+)
G957942 NA other downstream 1234472 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 1428601 24794600 ~ 24795736 (+)
G960696 LOC106583976 other downstream 3347626 26713625 ~ 26797294 (+)

Expression


Co-expression Network