LOC110535498


Basic Information

Item Value
gene id LOC110535498
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 23381529 ~ 23387901 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620525.2
tagacaactatacagaaaacgctcaaattgctgaaataagtacatggaatcaatgatgagagaatagtgAGATTAACTGATTAGTAAAATAGCAGTGGAGATGGCACTCTTTTGCTTAGAGATGTAGTATAGGTAATGAATCTGTAGATGACTCCTGAGAATGCTACGTAGTTTGTGGTGCAGGAAAAAGATCAGCATACTCAGAATCCAGAGATTGTGAGTCCCAGGTCGGGTCATATTGAAAAGTTAGCACTAAGTGATCATGTCAAGTGTAATCATATTGATTAAAGATGTTTACGCTATTTTAGCTGAACAGCGTACCACTTACCTTGAAACACCCATACCATTTTATTATATTTTCATGTTTTCACCTCACCTGTAAATCTCACATGTGAATTGCAGATTTACATGTGACATTGCAGTTTCACATTTGAAAATCTTTCATCTGCGAAAATGTTCAAATGTTGGGGAAATTTTGCATCCATCCCCATGTCACATTTATTTCACGAGATCTTGTTTTCTCATGTAGCTTaatgttatcacattaacttcacatgaGATCACGTGAAATTTATGTGGTTTTTCCGTAAGGGTGGTAACACTCTTGGCTTTTGGGTCTGTTTGCTTGAGGGAATTTTTTTCCTATGCTATTTTTATGTTATTTCTTTTCTAAAGAATGTGTGTGATGAAAAAGCTGAGGGTAAACATCACTGACATTAGTGTCAAGGCTTTGTAGTATGGCTGAGAACAAACATACCTATCCTGTTTCATCATTAAATCTGTAACGATGGCATTTTCTCCATGTAAATGATTCACTTTGTCTTCTATCACTTTTGCATTTGTAATGAGCTGATTTCAATGCGTTGGTTCGAGGGCTCGTGCTGTAGCCTAACACACTCCCACAGCTGAGTAGTGTGACAAGATTAGAGCTGTAAACATGAACATTCTCCCGTAATGTTTTTCTCCCCCAGATGAGAATGAATTTCACGGACGCCAGAGGGTTAGAAGAGAGTTAAACCTGAACTGCAGATGTTTGGATGTGAGGAATATCGTAGTGTCGTCCCATTTGATAACTGGGCCACGGTCCTATGCAGTAGAAGAAGTGGGGGATgggatggagatagaggagaagcTCACTTCCAATCGCGTTCCTCTCCCAGTGAAATCTCCTAGACAGCTCCAGAATAACCCCTGCTGGGAGAGATTTAACACGTCCAATTCCAACTGTGCTCAGACGCATTCCCAAACGGGCGTCGACGATCCTCCACCTCAGAAGAATAGAAAAGTTGCTCAAAGCAAAAAATATTTCTCACCACAATCTGAACAAACAAACATCAAACAACAGAGACTGAAGCAGCGACTTCTGCCACTGACCAGGTCCCATTGGGGCCCAGCCTCTtcatgtgttttgtgtgtagagCAGTCTGCAGAGGAACTAGCAGTGCCATGGCGGTGTAGGGCGATGGTGGCACAGAACCCTGAACCATCTCGGCTCCCTTCCAGAATCCTGCCAAACCTCCAAAACACAATTAGAGCATCTGGCTGTGAGATACTGGAGCTGTGCCGACGTATGTCCTCTAGGATGAACTATGTGAACCATGTGAGCCCGACCACATCTGGAACTGGAACTAGACCGGTGGGTTGGAGGTTGCTTGGGAAGCCCGTAGGGGACAGTGGAGCACAGGTGCGGGTCAGTCAACCAGAACACCCCTCCTGGAATGTGAGAAAGTTCTCTGGGGCATCAGTTGACAGCCACAGTCTCACCAGCCTTCTGCATAATAGTGATTGTGGTTCTGGTGTATCCAGGGGCAGCCAGACCCAGACACATCTTCCAGATACTGGGCTCTCTGGCTGTGCTAAAGACAGCAAAGGAGACAGCCAACAGCATGGATGGAAGGTCAGCAGATCCAGGAGGGAccagagaggtggaggtggggttggAAAAGGGAGACAGATGCCCAGAGAAGAATCCTTGCGGTGGGGTGAAGGATCAACATGGCCTTGGGACTCCGAGAGTCAGTCAAGGAACCAGCGGCAGAACGAGTCCCCAACAGACTGTGATGTCACCCTACTGCACATTGTGCATCTTTTACAGTGTAGGTCAGTCAATCTGTCTCATGTCAGGGAAGAAGGACAATTTGGAGATGATTTTCAACATATCCTTCACAACAGACAAACTTGACTCAAGCAAATAGCAAGATATTTAGTATTCAGAGTAGGTTAGTGAATGGACAGGAGGAGCGAGCAATCTTgatataattattttttattccAAGACTGTAAATTGAATTTTGTCTACAGTGTAAAAGGTCATGATAAAAAGACAAAGGAATGAAATAGAAGTTTGGTAAAACAACTGGGTGACCAGAATATCAACAACATCCATACAAACTGATTCACTATGCTAAATAATGACAATGTAACAGTCTGACTTCAAACCAGGGAAGAACAAGAAGAAAaacctgtcatttaaaaaaaagatcaGTAGCTAGGTTGCATGAAACTCTTGTCTATGGACCAAAAGTTTAACAAAAAGGTATGAATGTGTAGTTTAACAAAAAGGTATGAATGTGTAGTTTAACAAAAAGGTATGAATGTGTAGTTTAACAAAAAGGTATGAATGTGTAGTTTAACCAAATGTATGAGTATGTAGTTTAATCAAATGTATGATTATGTAGTGTAACCAAATGTATGAGTATCTAGTGTAACCAAATGTATGAGTATCTAGTGTAACCAAATGTATGAGTATCTAGTGTAACCAAGCGTATGAGTCTAGTGTAACCAAATGTATGAGTATCTAGTGTAACCAAATGTATGAGTATCTAGTGTAACCAAATGTATGAGTATCTAGTGTAACCAAGCGTATGAGTCTAGTTTAACCAAATTTATGAGTATGTAGTGTAACCAAATGTATGAGTATGTAGTGTAACCAAATGTATGAGTATGTAGTGTAACCAAGTGTATGAGTATGTAGTTTAACTAAATGTATGAGTATGTAGTGTGACAAAAAGTTCTGAGTATGCAGTAGAGGTTGTAATACAACATAAATAGAGAAAATATTAAAGTCAGAGTataaaaaaatcaaaacataGTCATGTGCACTTGTATAACATGGTATAGCTATGTTAAAGTAATACTAGTCCAttaacacatgtactgtactttttgtgaacaaacacacacatacatacagtgcacaACCATAAGAAAATAGACAGCCATAATGTCTGACAGAAGGATACAGTATGTATACATTTTATACAATTCACTTTTTCCATCATTTGAATATAATAACACTAACCGTTAGGTCTTGCAATGCACATGTTAGCAGATTTTACAAATCCTGAATGTTCTAGACATAATTACGTATATTTTCCAAGCAGCAGCGGTATGGGCGGCCATCTTGCCTGCGTTTCTGAGTCAAGCTTGATTTTAAAGTGCTGCTGTTATCATGTTCCTGTGTTGTTGTGTCCTTTATGATAGTTCAGTGCTTTAGTGATCATtacaaaaatatagatttcagGGGCAACATAATGGGGACATCAATATTatgctctgctcttctctactcatGGGCAAAACAGTCAGAAAATGAATGTTATTGCTCCTCTTAAAACTATTTTCGCATTGACTGGGGTTGGTCGATCGAATCGCAGCTTGCATCCCAAAGTACAGTTTTATTTCTGCACACTCTGAGGTGTCTTAGGACGAAAGACCCGTTTTAAATTTCACCAGTGACAGATGTGGTATTGTTGAACCTCAGTTACATACATTAATATCTGAGAGAATCATAGTAAGACAATGACGTTTCACCATAACACAACAAATCTCAATATTGGCCTGTGAGACAGTGACACAGTTCCCTGTCACATGCGTTCATATGTATCAACAATAGACTTAAAGTAATTACTAAACGATTAGCGACATTGTGCTCCATTCACTATATCCCTTCCACACCAGAGAGAGCTgaataaagagagagtgagagagagagcgagagagagagagggagagagagagagagagagagagagagagagagagagagaggagacacgcACGCTGACACACAGATGACAACCAACCCCTCTTCGAGCTCCAAGTGATGGCGTATCAGCTTTAGGAACTGCCACATGAAGCAACATGAATAAAAGTGAAGCAACATGAATAAAAATGAAGCAACATGAATCAAAGTCTAACCAACATCATTGGTTTGCATTTCTCATAATCTGGGGTTGAAATATATGTCCCTGTATGTGGCAACAGGGACATTTTTGAATCTACAAATTC
>TU1090608
GACTGTAAATTGAATTTTGTCTACAGTGTAAAAGGTCATGATAAAAAGACAAAGGAATGAAATAGAAGTTTGGTAAAACAACTGGGTGACCAGAATATCAACAACATCCATACAAACTGATTCACTATGCTAAATAATGACAATGTAACAGTCTGACTTCAAACCAGGGAAGAACAAGAAGAAAaacctgtcatttaaaaaaaagatcaGTAGCTAGGTTGCATGAAACTCTTGTCTATGGACCAAAAGTTTAACAAAAAGGTATGAATGTGTAGTTTAACAAAAAGGTATGAATGTGTAGTTTAACAAAAAGGTATGAATGTGTAGTTTAACCAAATGTATGAGTATGTAGTTTAATCAAATGTATGATTATGTAGTGTAACCAAATGTATGAGTATCTAGTGTAACCAAATGTATGAGTATCTAGTGTAACCAAATGTATGAGTATCTAGTGTAACCAAGCGTATGAGTCTAGTGTAACCAAATGTATGAGTATCTAGTGTAACCAAATGTATGAGTATCTAGTGTAACCAAATGTATGAGTATCTAGTGTAACCAAGCGTATGAGTCTAGTTTAACCAAATTTATGAGTATGTAGTGTAACCAAATGTATGAGTATGTAGTGTAACCAAATGTATGAGTATGTAGTGTAACCAAGTGTATGAGTATGTAGTTTAACTAAATGTATGAGTATGTAGTGTGACAAAAAGTTCTGAGTATGCAGTAGAGGTTGTAATACAACATAAATAGAGAAAATATTAAAGTCAGAGTataaaaaaatcaaaacataGTCATGTGCACTTGTATAACATGGTATAGCTATGTTAAAGTAATACTAGTCCAttaacacatgtactgtactttttgtgaacaaacacacacatacatacagtgcacaACCATAAGAAAATAGACAGCCATAATGTCTGACAGAAGGATACAGTATGTATACATTTTATACAATTCACTTTTTCCATCATTTGAATATAATAACACTAACCGTTAGGTCTTGCAATGCACATGTTAGCAGATTTTACAAATCCTGAATGTTCTAGACATAATTACGTATATTTTCCAAGCAGCAGCGGTATGGGCGGCCATCTTGCCTGCGTTTCTGAGTCAAGCTTGATTTTAAAGTGCTGCTGTTATCATGTTCCTGTGTTGTTGTGTCCTTTATGATAGTTCAGTGCTTTAGTGATCATtacaaaaatatagatttcagGGGCAACATAATGGGGACATCAATATTatgctctgctcttctctactcatGGGCAAAACAGTCAGAAAATGAATGTTATTGCTCCTCTTAAAACTATTTTCGCATTGACTGGGGTTGGTCGATCGAATCGCAGCTTGCATCCCAAAGTACAGTTTTATTTCTGCACACTCTGAGGTGTCTTAGGACGAAAGACCCGTTTTAAATTTCACCAGTGACAGATGTGGTATTGTTGAACCTCAGTTACATACATTAATATCTGAGAGAATCATAGTAAGACAATGACGTTTCACCATAACACAACAAATCTCAATATTGGCCTGTGAGACAGTGACACAGTTCCCTGTCACATGCGTTCATATGTATCAACAATAGACTTAAAGTAATTACTAAACGATTAGCGACATTGTGCTCCATTCACTATATCCCTTCCACACCAGAGAGAGCTgaataaagagagagtgagagagagagcgagagagagagagggagagagagagagagagagagagagagagagagagagagaggagacacgcACGCTGACACACAGATGACAACCAACCCCTCTTCGAGCTCCAAGTGATGGCGTATCAGCTTTAGGAACTGCCACATGAAGCAACATGAATAAAAGTGAAGCAACATGAATAAAAATGAAGCAACATGAATCAAAGTCTAACCAACATCATTGGTTTGCATTTCTCATAATCTGGGGTTGAAATATATGTCCCTGTATGTGGCAACAGGGACATTTTTGAATCTACAAATTCAACACaacatacagtaggctacatttgagaaaaataatGCTCCCTAGCTTCCCATTATTTAGGATACTGATAATGTAACAATGCTTATTGTACACAAAATAGAGTCCAATGATGAAATATAATTTACATGAAGCGATGGCAGAATGAATAAGAACATATCTGACCAACATTGTGGAAAAAATGGATCAGTCACTTCCATGATGAAGTCCTCTCTTCTACAGTATAAAGTGGCATCTGGATCACAGCGTGTCAGCATTTCTGCTTATAATGACAAGTCGAGTTAATTCAAGTTGAATCAGGTCAATTTTCCTCATTTAGGGATTAAGTCCAAAAATAGATTCAATAAATGCAGTAAACACATGGAGAAACACAGCAAAGAGCTTCCCATCAAGCTATTGAGGAGTTTTTTTACATGACTGCGGCATAGGATATGATACAGGGACTgacaagacaacaacacagacagaccttATACAGTAGCCGTACATAATGAGTTAGCGTTGCACCCCGACTATTACATTTTTGATTGGACGGTGAAGAGCGTTGATGTCCAATGGGTTTGCAAAACGGACGATTCAACGTCATGTGACTTCAGCGAAGGTGATGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620525.2 False 4290 mRNA 0.40 2 23381529 23387293
TU1090608 True 2597 lncRNA 0.37 2 23385279 23387901

Neighbor

gene id symbol gene type direction distance location
snx7 snx7 coding upstream 15530 23329750 ~ 23365999 (+)
ptbp2a ptbp2 coding upstream 414726 22951161 ~ 22966803 (+)
LOC110535493 LOC106578494 coding upstream 624552 22750723 ~ 22756977 (+)
tlcd4a LOC106570700 coding upstream 640266 22712577 ~ 22741263 (+)
LOC110535486 LOC106578488 coding upstream 817422 22557109 ~ 22564107 (+)
LOC118937334 NA coding downstream 87842 23475135 ~ 23477150 (+)
LOC110535500 LOC106578508 coding downstream 107616 23494909 ~ 23531354 (+)
palmdb LOC106578510 coding downstream 176382 23563675 ~ 23604917 (+)
LOC118936499 LOC106578510 coding downstream 203546 23590839 ~ 23594014 (+)
LOC110535501 LOC106578509 coding downstream 248606 23635899 ~ 23661525 (+)
G956569 NA non-coding upstream 10966 23370317 ~ 23370563 (+)
G956564 NA non-coding upstream 21661 23358901 ~ 23359868 (+)
G956507 NA non-coding upstream 97964 23283357 ~ 23283565 (+)
G956498 NA non-coding upstream 103881 23277204 ~ 23277648 (+)
G956497 NA non-coding upstream 104932 23276382 ~ 23276597 (+)
G956597 NA non-coding downstream 25032 23412325 ~ 23416289 (+)
G956657 NA non-coding downstream 105779 23493072 ~ 23493446 (+)
G956682 NA non-coding downstream 157201 23544494 ~ 23544728 (+)
G956732 NA non-coding downstream 290787 23678080 ~ 23681424 (+)
G956739 NA non-coding downstream 300982 23688275 ~ 23688480 (+)
phldb2b tcpe other upstream 3612176 19740565 ~ 19799150 (+)
G951511 NA other upstream 4254444 19126665 ~ 19127085 (+)
G948710 NA other upstream 6779637 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 6836240 16543682 ~ 16565783 (+)
G956728 LOC106613263 other downstream 277995 23665288 ~ 23665930 (+)
G956797 NA other downstream 388479 23775772 ~ 23776845 (+)
G957942 NA other downstream 1213178 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 1407307 24794600 ~ 24795736 (+)
G960696 LOC106583976 other downstream 3326332 26713625 ~ 26797294 (+)

Expression


Co-expression Network