LOC110535499 (LOC106578506)


Basic Information

Item Value
gene id LOC110535499
gene name LOC106578506
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 23387287 ~ 23491648 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935206.1
GGCGCGGCTGCTGctgcgcacaaacacacagacccaCGCGTGCGCTCCCTCCAATCCACACGTTTTCATCTCTATCTCGTTCATTCCGGTTCCAGTGACCAACCGGGGGTGACAGAACACGGCTCTGTGAACATCACCATTCAGCAATGCCTTATAACGAGCATTAGTGGCAGTAGGAGAAATGTGTGGCTGACAGGTGCTATGGTCAAGCTGCTGCGCTAGGCTAGGGGCGAAGAAGGCGGAATGAAAACAGAGGTGGCGGGGCTTTCTCTCCTCAGTCAAGTGGATTGTTAAATGTTCCTTTCTCTTCCTTTGACAAACATGCTTTATTTTCAGCTGGTGATCATGGCGGGGACGGTCATGCTGGCATACTACTTCGAGTACACGGACACGTTTAACGTGCACGTCCAAGGGTTCTTCTGCTATGACAATGCCTACGCGAAGCCTTACCTCGGACCGGAGGAGTCCAGCGCGATCCCTCCCGCTCTACTGTATGCGCTCGTGGCAGGGGTCCCAACACTTGTGATCATGATCTCAGAGACCGTCCTGTTCTTGATACAATACTCGTCCAAAGAGCTGGACAGTCAGGAGAAGACCATGCTGACAGGAGACTGCTGCTACCTCAACCCTCTGGTGCGCAGGACCTTTCGCTTTCTGGgaGTGTACACGTTCGGGCTGTTCACTGTGGACATCTTTGTAAACGCGGGCCAGGTGGTGACGGGCAACCTGTCCCCCCACTTCCTGACGGTGTGTAAGCCCAACTTCACGGCCCTGGGCTGCCAGCACGCCCTCCGCTACATCAGCCACCAAGAGGCCTGCACCGGGAACCAGGAGGATATCCTGCGTGCACGTAAAACCTTCCCCTCCAAAGAGGCTGCTCTCAGCGTCTACGCAGCTCTCTATCTTGCGAGTTACATCACGTGCACGGTGAAAGCCAAAGGGACGCGGCTAGCCAAGCCTGTGCTGTCCCTGGGTCTGATGTGTCTGGCCTTCCTCACAGGACTCAACAGAGTGGCTGAGTATCGGAACCACTGGTCTGATGTCATCGCTGGCTTCATCATAGGAGTGGCCATCGCTACCTTCCTGgtggtgtgtgtggtgcatAACTTCAAAGGCAAGCTGTTGCTCAGTGAAGACCCCCCGCAGGACAACATGCCTAGTGCTCCCATGATGAACATGTCCAGAGTGGAGAGCCCACTGGAGAAGTACATCGCCTCGCAGAATCACATCACCTTCGCTGAAGTCACATGACGTTGAATCGTCCGTTTTGCAAACCCATTGGACATCAACGCTCTTCACCGTCCAATCAAAAATGTAATAGTCGGGGTGCAACGCTAACTCATTATGTACGGCTACTGTATaaggtctgtctgtgttgttgtcttgtcAGTCCCTGTATCATATCCTATGCCGCAGTCATGTAAAAAAACTCCTCAATAGCTTGATGGGAAGCTCTTTGCTGTGTTTCTCCATGTGTTTACTGCATTTATTGAATCTATTTTTGGACTTAATCCCTAAATGAGGAAAATTGACCTGATTCAACTTGAATTAACTCGACTTGTCATTATAAGCAGAAATGCTGACACGCTGTGATCCAGATGCCACTTTATACTGTAGAAGAGAGGACTTCATCATGGAAGTGACTGATCCATTTTTTCCACAATGTTGGTCAGATATGTTCTTATTCATTCTGCCATCGCTTCATGTAAATTATATTTCATCATTGGACTCTATTTTGTGTACAATAAGCATTGTTACATTATCAGTATCCTAAATAATGGGAAGCTAGGGAGCattatttttctcaaatgtagcctactgtatgttGTGTTGAATTTG
>XM_021620528.2
GCGGCGCGGCTGCTGctgcgcacaaacacacagacccaCGCGTGCGCTCCCTCCAATCCACACGTTTTCATCTCTATCTCGTTCATTCCGGTTCCAGTGACCAACCGGGGGTGACAGAACACGGCTCTGTGAACATCACCATTCAGCAATGCCTTATAACGAGCATTAGTGGCAGTAGGAGAAATGTGTGGCTGACAGGTGCTATGGTCAAGCTGCTGCGCTAGGCTAGGGGCGAAGAAGGCGGAATGAAAACAGAGGTGGCGGGGCTTTCTCTCCTCAGTCAAGTGGATTGTTAAATGTTCCTTTCTCTTCCTTTGACAAACATGCTTTATTTTCAGCTGGTGATCATGGCGGGGACGGTCATGCTGGCATACTACTTCGAGTACACGGACACGTTTAACGTGCACGTCCAAGGGTTCTTCTGCTATGACAATGCCTACGCGAAGCCTTACCTCGGACCGGAGGAGTCCAGCGCGATCCCTCCCGCTCTACTGTATGCGCTCGTGGCAGGGGTCCCAACACTTGTGATCATGATCTCAGAGACCGTCCTGTTCTTGATACAATACTCGTCCAAAGAGCTGGACAGTCAGGAGAAGACCATGCTGACAGGAGACTGCTGCTACCTCAACCCTCTGGTGCGCAGGACCTTTCGCTTTCTGGgaGTGTACACGTTCGGGCTGTTCACTGTGGACATCTTTGTAAACGCGGGCCAGGTGGTGACGGGCAACCTGTCCCCCCACTTCCTGACGGTGTGTAAGCCCAACTTCACGGCCCTGGGCTGCCAGCACGCCCTCCGCTACATCAGCCACCAAGAGGCCTGCACCGGGAACCAGGAGGATATCCTGCGTGCACGTAAAACCTTCCCCTCCAAAGAGGCTGCTCTCAGCGTCTACGCAGCTCTCTATCTTGCGAGTTACATCACGTGCACGGTGAAAGCCAAAGGGACGCGGCTAGCCAAGCCTGTGCTGTCCCTGGGTCTGATGTGTCTGGCCTTCCTCACAGGACTCAACAGAGTGGCTGAGTATCGGAACCACTGGTCTGATGTCATCGCTGGCTTCATCATAGGAGTGGCCATCGCTACCTTCCTGgtggtgtgtgtggtgcatAACTTCAAAGGCAAGCTGTTGCTCAGTGAAGACCCCCCGCAGGACAACATGCCTAGTGCTCCCATGATGAACATGTCCAGAGTGGAGAGCCCACTGGAGAAGTACATCGCCTCGCAGATCTGGGCAGGAGCGGACAGGGGTTATATGGCAGTTGAACCACATTATCAAGAATCACATCACCTTCGCTGAAGTCACATGACGTTGAATCGTCCGTTTTGCAAACCCATTGGACATCAACGCTCTTCACCGTCCAATCAAAAATGTAATAGTCGGGGTGCAACGCTAACTCATTATGTACGGCTACTGTATaaggtctgtctgtgttgttgtcttgtcAGTCCCTGTATCATATCCTATGCCGCAGTCATGTAAAAAAACTCCTCAATAGCTTGATGGGAAGCTCTTTGCTGTGTTTCTCCATGTGTTTACTGCATTTATTGAATCTATTTTTGGACTTAATCCCTAAATGAGGAAAATTGACCTGATTCAACTTGAATTAACTCGACTTGTCATTATAAGCAGAAATGCTGACACGCTGTGATCCAGATGCCACTTTATACTGTAGAAGAGAGGACTTCATCATGGAAGTGACTGATCCATTTTTTCCACAATGTTGGTCAGATATGTTCTTATTCATTCTGCCATCGCTTCATGTAAATTATATTTCATCATTGGACTCTATTTTGTGTACAATAAGCATTGTTACATTATCAGTATCCTAAATAATGGGAAGCTAGGGAGCattatttttctcaaatgtagcctactgtatgttGTGTTGAATTTG
>XM_021620530.2
GCGGCGCGGCTGCTGctgcgcacaaacacacagacccaCGCGTGCGCTCCCTCCAATCCACACGTTTTCATCTCTATCTCGTTCATTCCGGTTCCAGTGACCAACCGGGGGTGACAGAACACGGCTCTGTGAACATCACCATTCAGCAATGCCTTATAACGAGCATTAGTGGCAGTAGGAGAAATGTGTGGCTGACAGGTGCTATGGTCAAGCTGCTGCGCTAGGCTAGGGGCGAAGAAGGCGGAATGAAAACAGAGCTGGTGATCATGGCGGGGACGGTCATGCTGGCATACTACTTCGAGTACACGGACACGTTTAACGTGCACGTCCAAGGGTTCTTCTGCTATGACAATGCCTACGCGAAGCCTTACCTCGGACCGGAGGAGTCCAGCGCGATCCCTCCCGCTCTACTGTATGCGCTCGTGGCAGGGGTCCCAACACTTGTGATCATGATCTCAGAGACCGTCCTGTTCTTGATACAATACTCGTCCAAAGAGCTGGACAGTCAGGAGAAGACCATGCTGACAGGAGACTGCTGCTACCTCAACCCTCTGGTGCGCAGGACCTTTCGCTTTCTGGgaGTGTACACGTTCGGGCTGTTCACTGTGGACATCTTTGTAAACGCGGGCCAGGTGGTGACGGGCAACCTGTCCCCCCACTTCCTGACGGTGTGTAAGCCCAACTTCACGGCCCTGGGCTGCCAGCACGCCCTCCGCTACATCAGCCACCAAGAGGCCTGCACCGGGAACCAGGAGGATATCCTGCGTGCACGTAAAACCTTCCCCTCCAAAGAGGCTGCTCTCAGCGTCTACGCAGCTCTCTATCTTGCGAGTTACATCACGTGCACGGTGAAAGCCAAAGGGACGCGGCTAGCCAAGCCTGTGCTGTCCCTGGGTCTGATGTGTCTGGCCTTCCTCACAGGACTCAACAGAGTGGCTGAGTATCGGAACCACTGGTCTGATGTCATCGCTGGCTTCATCATAGGAGTGGCCATCGCTACCTTCCTGgtggtgtgtgtggtgcatAACTTCAAAGGCAAGCTGTTGCTCAGTGAAGACCCCCCGCAGGACAACATGCCTAGTGCTCCCATGATGAACATGTCCAGAGTGGAGAGCCCACTGGAGAAGTACATCGCCTCGCAGATCTGGGCAGGAGCGGACAGGGGTTATATGGCAGTTGAACCACATTATCAAGAATCACATCACCTTCGCTGAAGTCACATGACGTTGAATCGTCCGTTTTGCAAACCCATTGGACATCAACGCTCTTCACCGTCCAATCAAAAATGTAATAGTCGGGGTGCAACGCTAACTCATTATGTACGGCTACTGTATaaggtctgtctgtgttgttgtcttgtcAGTCCCTGTATCATATCCTATGCCGCAGTCATGTAAAAAAACTCCTCAATAGCTTGATGGGAAGCTCTTTGCTGTGTTTCTCCATGTGTTTACTGCATTTATTGAATCTATTTTTGGACTTAATCCCTAAATGAGGAAAATTGACCTGATTCAACTTGAATTAACTCGACTTGTCATTATAAGCAGAAATGCTGACACGCTGTGATCCAGATGCCACTTTATACTGTAGAAGAGAGGACTTCATCATGGAAGTGACTGATCCATTTTTTCCACAATGTTGGTCAGATATGTTCTTATTCATTCTGCCATCGCTTCATGTAAATTATATTTCATCATTGGACTCTATTTTGTGTACAATAAGCATTGTTACATTATCAGTATCCTAAATAATGGGAAGCTAGGGAGCattatttttctcaaatgtagcctactgtatgttGTGTTGAATTTG
>XM_021620526.2
CAAGGTAATTGACAACATACCGGAGACACTGAAAGTATTGAAATTAATGAGTTATTTTCACGAGAAGGGACCTTGGAAATTCGTAGAACACTAAATGTACATCCAAGAAGCAAACGTCCGTAGAGATACAAACATATGAGTCACGTCTGGTTGTTTATTTATCACGTTCAGACTTCTGAAGCTGTTGAGTCGCTAAAACTCCTTGAGCAGTCCAAGTTAATGCCACATTTTGGTGTACGGAAACATGCCTGCAGTCGCAGAAAGATGGGAGCCAAGAGATAAGAGGAAATTCTTCACTTACCTGCTTGTGGAGCTGGTGATCATGGCGGGGACGGTCATGCTGGCATACTACTTCGAGTACACGGACACGTTTAACGTGCACGTCCAAGGGTTCTTCTGCTATGACAATGCCTACGCGAAGCCTTACCTCGGACCGGAGGAGTCCAGCGCGATCCCTCCCGCTCTACTGTATGCGCTCGTGGCAGGGGTCCCAACACTTGTGATCATGATCTCAGAGACCGTCCTGTTCTTGATACAATACTCGTCCAAAGAGCTGGACAGTCAGGAGAAGACCATGCTGACAGGAGACTGCTGCTACCTCAACCCTCTGGTGCGCAGGACCTTTCGCTTTCTGGgaGTGTACACGTTCGGGCTGTTCACTGTGGACATCTTTGTAAACGCGGGCCAGGTGGTGACGGGCAACCTGTCCCCCCACTTCCTGACGGTGTGTAAGCCCAACTTCACGGCCCTGGGCTGCCAGCACGCCCTCCGCTACATCAGCCACCAAGAGGCCTGCACCGGGAACCAGGAGGATATCCTGCGTGCACGTAAAACCTTCCCCTCCAAAGAGGCTGCTCTCAGCGTCTACGCAGCTCTCTATCTTGCGAGTTACATCACGTGCACGGTGAAAGCCAAAGGGACGCGGCTAGCCAAGCCTGTGCTGTCCCTGGGTCTGATGTGTCTGGCCTTCCTCACAGGACTCAACAGAGTGGCTGAGTATCGGAACCACTGGTCTGATGTCATCGCTGGCTTCATCATAGGAGTGGCCATCGCTACCTTCCTGgtggtgtgtgtggtgcatAACTTCAAAGGCAAGCTGTTGCTCAGTGAAGACCCCCCGCAGGACAACATGCCTAGTGCTCCCATGATGAACATGTCCAGAGTGGAGAGCCCACTGGAGAAGTACATCGCCTCGCAGATCTGGGCAGGAGCGGACAGGGGTTATATGGCAGTTGAACCACATTATCAAGAATCACATCACCTTCGCTGAAGTCACATGACGTTGAATCGTCCGTTTTGCAAACCCATTGGACATCAACGCTCTTCACCGTCCAATCAAAAATGTAATAGTCGGGGTGCAACGCTAACTCATTATGTACGGCTACTGTATaaggtctgtctgtgttgttgtcttgtcAGTCCCTGTATCATATCCTATGCCGCAGTCATGTAAAAAAACTCCTCAATAGCTTGATGGGAAGCTCTTTGCTGTGTTTCTCCATGTGTTTACTGCATTTATTGAATCTATTTTTGGACTTAATCCCTAAATGAGGAAAATTGACCTGATTCAACTTGAATTAACTCGACTTGTCATTATAAGCAGAAATGCTGACACGCTGTGATCCAGATGCCACTTTATACTGTAGAAGAGAGGACTTCATCATGGAAGTGACTGATCCATTTTTTCCACAATGTTGGTCAGATATGTTCTTATTCATTCTGCCATCGCTTCATGTAAATTATATTTCATCATTGGACTCTATTTTGTGTACAATAAGCATTGTTACATTATCAGTATCCTAAATAATGGGAAGCTAGGGAGCattatttttctcaaatgtagcctactgtatgttGTGTTGAATTTG
>XM_021620529.2
CAAGGTAATTGACAACATACCGGAGACACTGAAAGTATTGAAATTAATGAGTTATTTTCACGAGAAGGGACCTTGGAAATTCGTAGAACACTAAATGTACATCCAAGAAGCAAACGTCCGTAGAGATACAAACATATGAGTCACGTCTGGTTGTTTATTTATCACGTTCAGACTTCTGAAGCTGTTGAGTCGCTAAAACTCCTTGAGCAGTCCAAGTTAATGCCACATTTTGGTGTACGGAAACATGCCTGCAGTCGCAGAAAGATGGGAGCCAAGAGATAAGAGGAAATTCTTCACTTACCTGCTTGTGGAGCTGGTGATCATGGCGGGGACGGTCATGCTGGCATACTACTTCGAGTACACGGACACGTTTAACGTGCACGTCCAAGGGTTCTTCTGCTATGACAATGCCTACGCGAAGCCTTACCTCGGACCGGAGGAGTCCAGCGCGATCCCTCCCGCTCTACTGTATGCGCTCGTGGCAGGGGTCCCAACACTTGTGATCATGATCTCAGAGACCGTCCTGTTCTTGATACAATACTCGTCCAAAGAGCTGGACAGTCAGGAGAAGACCATGCTGACAGGAGACTGCTGCTACCTCAACCCTCTGGTGCGCAGGACCTTTCGCTTTCTGGgaGTGTACACGTTCGGGCTGTTCACTGTGGACATCTTTGTAAACGCGGGCCAGGTGGTGACGGGCAACCTGTCCCCCCACTTCCTGACGGTGTGTAAGCCCAACTTCACGGCCCTGGGCTGCCAGCACGCCCTCCGCTACATCAGCCACCAAGAGGCCTGCACCGGGAACCAGGAGGATATCCTGCGTGCACGTAAAACCTTCCCCTCCAAAGAGGCTGCTCTCAGCGTCTACGCAGCTCTCTATCTTGCGAGTTACATCACGTGCACGGTGAAAGCCAAAGGGACGCGGCTAGCCAAGCCTGTGCTGTCCCTGGGTCTGATGTGTCTGGCCTTCCTCACAGGACTCAACAGAGTGGCTGAGTATCGGAACCACTGGTCTGATGTCATCGCTGGCTTCATCATAGGAGTGGCCATCGCTACCTTCCTGgtggtgtgtgtggtgcatAACTTCAAAGGCAAGCTGTTGCTCAGTGAAGACCCCCCGCAGGACAACATGCCTAGTGCTCCCATGATGAACATGTCCAGAGTGGAGAGCCCACTGGAGAAGTACATCGCCTCGCAGAATCACATCACCTTCGCTGAAGTCACATGACGTTGAATCGTCCGTTTTGCAAACCCATTGGACATCAACGCTCTTCACCGTCCAATCAAAAATGTAATAGTCGGGGTGCAACGCTAACTCATTATGTACGGCTACTGTATaaggtctgtctgtgttgttgtcttgtcAGTCCCTGTATCATATCCTATGCCGCAGTCATGTAAAAAAACTCCTCAATAGCTTGATGGGAAGCTCTTTGCTGTGTTTCTCCATGTGTTTACTGCATTTATTGAATCTATTTTTGGACTTAATCCCTAAATGAGGAAAATTGACCTGATTCAACTTGAATTAACTCGACTTGTCATTATAAGCAGAAATGCTGACACGCTGTGATCCAGATGCCACTTTATACTGTAGAAGAGAGGACTTCATCATGGAAGTGACTGATCCATTTTTTCCACAATGTTGGTCAGATATGTTCTTATTCATTCTGCCATCGCTTCATGTAAATTATATTTCATCATTGGACTCTATTTTGTGTACAATAAGCATTGTTACATTATCAGTATCCTAAATAATGGGAAGCTAGGGAGCattatttttctcaaatgtagcctactgtatgttGTGTTGAATTTG

Function

NR:

description
phospholipid phosphatase-related protein type 5 isoform X4

GO: NA

KEGG:

id description
K19581 LPPR1_2_5; lipid phosphate phosphatase-related protein type 1/2/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935206.1 False 1839 mRNA 0.50 6 23387287 23454283
XM_021620528.2 False 1893 mRNA 0.50 7 23387287 23454285
XM_021620530.2 False 1812 mRNA 0.50 8 23387287 23454285
XM_021620526.2 False 1868 mRNA 0.48 9 23387287 23491648
XM_021620529.2 True 1816 mRNA 0.48 8 23387287 23491648

Neighbor

gene id symbol gene type direction distance location
LOC118937332 NA coding downstream 110241 23272776 ~ 23277046 (-)
LOC110535495 LOC106578501 coding downstream 141060 23028826 ~ 23246227 (-)
LOC110535490 LOC106578491 coding downstream 701491 22669966 ~ 22685796 (-)
LOC110535489 LOC106578489 coding downstream 758429 22622607 ~ 22628858 (-)
f3a LOC106578489 coding downstream 813560 22564042 ~ 22573727 (-)
frrs1b frrs1 coding upstream 113272 23604920 ~ 23650700 (-)
neurod6a neurod6 coding upstream 210200 23701848 ~ 23705346 (-)
LOC110535511 pde1c coding upstream 274701 23766349 ~ 23880905 (-)
LOC110536587 pde1c coding upstream 388728 23880376 ~ 23930851 (-)
vim vim coding upstream 475953 23967601 ~ 23976220 (-)
G956945 NA non-coding downstream 332 23385252 ~ 23386955 (-)
G956938 NA non-coding downstream 11019 23376022 ~ 23376268 (-)
G956937 NA non-coding downstream 11438 23375620 ~ 23375849 (-)
G956931 NA non-coding downstream 16644 23370331 ~ 23370643 (-)
G956904 NA non-coding downstream 45964 23340221 ~ 23341323 (-)
G957028 NA non-coding upstream 3047 23494695 ~ 23494897 (-)
G957059 NA non-coding upstream 45636 23537284 ~ 23537520 (-)
G957060 NA non-coding upstream 48667 23540315 ~ 23540577 (-)
G957092 NA non-coding upstream 129837 23621485 ~ 23661524 (-)
G957130 NA non-coding upstream 170817 23662465 ~ 23662697 (-)
G956366 NA other downstream 343302 23007150 ~ 23043985 (-)
G956234 LOC106578494 other downstream 630314 22753280 ~ 22756973 (-)
G954919 NA other downstream 1807459 21579583 ~ 21579828 (-)
G954484 arhgef4 other downstream 2133978 21246014 ~ 21253309 (-)
G954441 NA other downstream 2308629 21077650 ~ 21078658 (-)
G957170 NA other upstream 232331 23723979 ~ 23724418 (-)
G957157 LOC106578515 other upstream 254832 23746480 ~ 23748084 (-)
G957684 NA other upstream 751074 24242722 ~ 24243309 (-)
G958140 NA other upstream 962000 24453648 ~ 24454119 (-)
G958191 NA other upstream 1041356 24533004 ~ 24533544 (-)

Expression

LOC110535499(LOC106578506) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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LOC110535499(LOC106578506) Expression in each Bioproject

Bar chart with 19 bars.
LOC110535499(LOC106578506) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network